Ggra8938.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8938.t1
Unique NameGgra8938.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length463
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:868492..869880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7739.XP_002595354.1
Preferred namePSMD12
PFAMsPCI
Max annot lvl33208|Metazoa
KEGG koko:K03035
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
GOsGO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005838,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0008541,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0012505,GO:0016192,GO:0016579,GO:0019538,GO:0019941,GO:0022624,GO:0030141,GO:0030163,GO:0031410,GO:0031595,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032940,GO:0032991,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0060205,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0097708,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1904813,GO:1905368,GO:1905369
Evalue8.32e-124
EggNOG OGsCOG5071@1|root,KOG1498@2759|Eukaryota,38BJ1@33154|Opisthokonta,3BBH7@33208|Metazoa,3D02E@33213|Bilateria,47YUV@7711|Chordata
Descriptionproteasome-mediated ubiquitin-dependent protein catabolic process
COG categoryO
BRITEko00000,ko00001,ko00002,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8938Ggra8938Gracilaria gracilis GNS1m malegenetig00000860_pilon 868492..869880 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8938.t1.stop1Ggra8938.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 868492..868494 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8938.t1.CDS1Ggra8938.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 868492..869880 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8938.t1.exon1Ggra8938.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 868492..869880 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8938.t1.start1Ggra8938.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 869878..869880 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8938.t1Ggra8938.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 868492..869880 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8938.t1 ID=Ggra8938.t1|Name=Ggra8938.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=463bp
MDIDNGASTGKYTAGFGPFEADPEIETKIAEAVALSESSGIQAGIDKFLS
LERINRNAGAAPETAAICVNLIRILHKKKDWKAIGEYAVLISKRRAQLKT
AVQKTVQEIMSYLDETPDEKTKLSMLETLRDVTAGKIFVELERARLTRTL
AKIKEEKGDIDTAATIMQEMQVETFGGMERLEKFEFILEQVRLCLDKNDF
VRGAIIAKKIMPRQLNKEGLSDVKLRYYALMIRIHTHNSDYLQICRAYLE
RYDTTRAAEGQDWMRELKLASLLVVLSPKDSMQTDLLHRIQSFKAMEELP
TYAELLKLFSTDELIRWPILMEQYKNELSTVAGLAEADIKDEDLKWIAAL
QERVTEHNLRVMAKYYSRIRLGRLAELLDLSEENTERKLAAMVSDKKALW
ARIDRPAKIVSFATPKDADALLNSWATNVSSLLDIVEKTCHLVHRETMVH
TIEKGGAAGYQS*
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spliced messenger RNA

>Ggra8938.t1 ID=Ggra8938.t1|Name=Ggra8938.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1389bp|location=Sequence derived from alignment at tig00000860_pilon:868492..869880- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATCGACAATGGTGCTTCGACTGGAAAGTACACAGCTGGTTTTGG
GCCATTTGAAGCAGATCCAGAGATCGAAACGAAAATTGCAGAAGCAGTTG
CACTTTCTGAATCATCCGGTATTCAAGCGGGCATCGACAAGTTTCTCTCT
TTAGAGCGCATCAATCGAAATGCAGGGGCTGCACCAGAAACAGCTGCAAT
TTGCGTGAACCTCATTCGAATTCTGCACAAGAAGAAGGACTGGAAGGCGA
TTGGTGAATATGCTGTTCTAATCTCCAAGAGGAGGGCACAACTGAAGACT
GCAGTACAGAAGACTGTTCAAGAAATAATGTCATATCTTGATGAAACACC
AGATGAGAAGACGAAGCTTTCAATGCTTGAAACACTGCGAGACGTCACTG
CAGGTAAGATTTTTGTGGAATTAGAAAGAGCACGACTTACTCGAACCTTA
GCGAAGATTAAGGAGGAAAAGGGCGACATTGATACGGCGGCAACTATTAT
GCAAGAGATGCAAGTCGAGACTTTTGGAGGTATGGAAAGGCTGGAGAAGT
TTGAGTTCATCCTGGAACAAGTCAGACTGTGCCTTGACAAGAATGACTTC
GTCCGAGGGGCTATCATTGCGAAGAAGATCATGCCACGACAGTTGAACAA
GGAAGGGCTTTCTGATGTCAAATTACGGTATTATGCCCTAATGATTAGGA
TTCACACACACAACTCTGACTACCTGCAGATATGCCGTGCATATCTAGAG
CGATACGATACAACACGCGCGGCTGAGGGGCAAGATTGGATGAGAGAACT
CAAACTTGCATCCCTGTTGGTTGTTCTGTCCCCCAAAGACAGTATGCAGA
CAGATTTGCTGCACAGAATCCAATCTTTCAAGGCAATGGAGGAGCTTCCC
ACTTATGCTGAGCTCCTCAAGCTCTTTTCTACTGATGAACTTATTCGGTG
GCCGATCCTCATGGAACAATATAAGAATGAACTGAGCACGGTAGCGGGGT
TAGCAGAGGCTGATATTAAGGATGAAGATTTGAAATGGATTGCAGCGTTG
CAGGAACGAGTAACTGAACATAACCTTCGTGTCATGGCTAAATACTACTC
TCGTATACGCCTGGGCAGGCTTGCTGAGTTGCTGGATCTCTCAGAAGAAA
ACACGGAGAGAAAACTCGCCGCTATGGTATCAGATAAGAAGGCTCTATGG
GCTAGGATTGACAGGCCGGCGAAAATTGTGTCCTTTGCCACACCTAAAGA
CGCAGATGCACTATTGAACAGTTGGGCCACCAATGTGTCCTCCTTGCTAG
ATATTGTGGAGAAGACTTGTCATTTAGTCCATCGTGAGACAATGGTTCAT
ACCATTGAGAAAGGAGGGGCGGCAGGTTACCAATCATAA
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protein sequence of Ggra8938.t1

>Ggra8938.t1 ID=Ggra8938.t1|Name=Ggra8938.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=463bp
MDIDNGASTGKYTAGFGPFEADPEIETKIAEAVALSESSGIQAGIDKFLS
LERINRNAGAAPETAAICVNLIRILHKKKDWKAIGEYAVLISKRRAQLKT
AVQKTVQEIMSYLDETPDEKTKLSMLETLRDVTAGKIFVELERARLTRTL
AKIKEEKGDIDTAATIMQEMQVETFGGMERLEKFEFILEQVRLCLDKNDF
VRGAIIAKKIMPRQLNKEGLSDVKLRYYALMIRIHTHNSDYLQICRAYLE
RYDTTRAAEGQDWMRELKLASLLVVLSPKDSMQTDLLHRIQSFKAMEELP
TYAELLKLFSTDELIRWPILMEQYKNELSTVAGLAEADIKDEDLKWIAAL
QERVTEHNLRVMAKYYSRIRLGRLAELLDLSEENTERKLAAMVSDKKALW
ARIDRPAKIVSFATPKDADALLNSWATNVSSLLDIVEKTCHLVHRETMVH
TIEKGGAAGYQS*
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mRNA from alignment at tig00000860_pilon:868492..869880-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8938.t1 ID=Ggra8938.t1|Name=Ggra8938.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1389bp|location=Sequence derived from alignment at tig00000860_pilon:868492..869880- (Gracilaria gracilis GNS1m male)
ATGGACATCGACAATGGTGCTTCGACTGGAAAGTACACAGCTGGTTTTGG
GCCATTTGAAGCAGATCCAGAGATCGAAACGAAAATTGCAGAAGCAGTTG
CACTTTCTGAATCATCCGGTATTCAAGCGGGCATCGACAAGTTTCTCTCT
TTAGAGCGCATCAATCGAAATGCAGGGGCTGCACCAGAAACAGCTGCAAT
TTGCGTGAACCTCATTCGAATTCTGCACAAGAAGAAGGACTGGAAGGCGA
TTGGTGAATATGCTGTTCTAATCTCCAAGAGGAGGGCACAACTGAAGACT
GCAGTACAGAAGACTGTTCAAGAAATAATGTCATATCTTGATGAAACACC
AGATGAGAAGACGAAGCTTTCAATGCTTGAAACACTGCGAGACGTCACTG
CAGGTAAGATTTTTGTGGAATTAGAAAGAGCACGACTTACTCGAACCTTA
GCGAAGATTAAGGAGGAAAAGGGCGACATTGATACGGCGGCAACTATTAT
GCAAGAGATGCAAGTCGAGACTTTTGGAGGTATGGAAAGGCTGGAGAAGT
TTGAGTTCATCCTGGAACAAGTCAGACTGTGCCTTGACAAGAATGACTTC
GTCCGAGGGGCTATCATTGCGAAGAAGATCATGCCACGACAGTTGAACAA
GGAAGGGCTTTCTGATGTCAAATTACGGTATTATGCCCTAATGATTAGGA
TTCACACACACAACTCTGACTACCTGCAGATATGCCGTGCATATCTAGAG
CGATACGATACAACACGCGCGGCTGAGGGGCAAGATTGGATGAGAGAACT
CAAACTTGCATCCCTGTTGGTTGTTCTGTCCCCCAAAGACAGTATGCAGA
CAGATTTGCTGCACAGAATCCAATCTTTCAAGGCAATGGAGGAGCTTCCC
ACTTATGCTGAGCTCCTCAAGCTCTTTTCTACTGATGAACTTATTCGGTG
GCCGATCCTCATGGAACAATATAAGAATGAACTGAGCACGGTAGCGGGGT
TAGCAGAGGCTGATATTAAGGATGAAGATTTGAAATGGATTGCAGCGTTG
CAGGAACGAGTAACTGAACATAACCTTCGTGTCATGGCTAAATACTACTC
TCGTATACGCCTGGGCAGGCTTGCTGAGTTGCTGGATCTCTCAGAAGAAA
ACACGGAGAGAAAACTCGCCGCTATGGTATCAGATAAGAAGGCTCTATGG
GCTAGGATTGACAGGCCGGCGAAAATTGTGTCCTTTGCCACACCTAAAGA
CGCAGATGCACTATTGAACAGTTGGGCCACCAATGTGTCCTCCTTGCTAG
ATATTGTGGAGAAGACTTGTCATTTAGTCCATCGTGAGACAATGGTTCAT
ACCATTGAGAAAGGAGGGGCGGCAGGTTACCAATCATAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:868492..869880-

>Ggra8938.t1 ID=Ggra8938.t1|Name=Ggra8938.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1389bp|location=Sequence derived from alignment at tig00000860_pilon:868492..869880- (Gracilaria gracilis GNS1m male)
ATGGACATCGACAATGGTGCTTCGACTGGAAAGTACACAGCTGGTTTTGG
GCCATTTGAAGCAGATCCAGAGATCGAAACGAAAATTGCAGAAGCAGTTG
CACTTTCTGAATCATCCGGTATTCAAGCGGGCATCGACAAGTTTCTCTCT
TTAGAGCGCATCAATCGAAATGCAGGGGCTGCACCAGAAACAGCTGCAAT
TTGCGTGAACCTCATTCGAATTCTGCACAAGAAGAAGGACTGGAAGGCGA
TTGGTGAATATGCTGTTCTAATCTCCAAGAGGAGGGCACAACTGAAGACT
GCAGTACAGAAGACTGTTCAAGAAATAATGTCATATCTTGATGAAACACC
AGATGAGAAGACGAAGCTTTCAATGCTTGAAACACTGCGAGACGTCACTG
CAGGTAAGATTTTTGTGGAATTAGAAAGAGCACGACTTACTCGAACCTTA
GCGAAGATTAAGGAGGAAAAGGGCGACATTGATACGGCGGCAACTATTAT
GCAAGAGATGCAAGTCGAGACTTTTGGAGGTATGGAAAGGCTGGAGAAGT
TTGAGTTCATCCTGGAACAAGTCAGACTGTGCCTTGACAAGAATGACTTC
GTCCGAGGGGCTATCATTGCGAAGAAGATCATGCCACGACAGTTGAACAA
GGAAGGGCTTTCTGATGTCAAATTACGGTATTATGCCCTAATGATTAGGA
TTCACACACACAACTCTGACTACCTGCAGATATGCCGTGCATATCTAGAG
CGATACGATACAACACGCGCGGCTGAGGGGCAAGATTGGATGAGAGAACT
CAAACTTGCATCCCTGTTGGTTGTTCTGTCCCCCAAAGACAGTATGCAGA
CAGATTTGCTGCACAGAATCCAATCTTTCAAGGCAATGGAGGAGCTTCCC
ACTTATGCTGAGCTCCTCAAGCTCTTTTCTACTGATGAACTTATTCGGTG
GCCGATCCTCATGGAACAATATAAGAATGAACTGAGCACGGTAGCGGGGT
TAGCAGAGGCTGATATTAAGGATGAAGATTTGAAATGGATTGCAGCGTTG
CAGGAACGAGTAACTGAACATAACCTTCGTGTCATGGCTAAATACTACTC
TCGTATACGCCTGGGCAGGCTTGCTGAGTTGCTGGATCTCTCAGAAGAAA
ACACGGAGAGAAAACTCGCCGCTATGGTATCAGATAAGAAGGCTCTATGG
GCTAGGATTGACAGGCCGGCGAAAATTGTGTCCTTTGCCACACCTAAAGA
CGCAGATGCACTATTGAACAGTTGGGCCACCAATGTGTCCTCCTTGCTAG
ATATTGTGGAGAAGACTTGTCATTTAGTCCATCGTGAGACAATGGTTCAT
ACCATTGAGAAAGGAGGGGCGGCAGGTTACCAATCATAA
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