Ggra8936.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8936.t1
Unique NameGgra8936.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length345
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:865386..866520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707753.1
Preferred nameEIF3H
PFAMsJAB
Max annot lvl2759|Eukaryota
KEGG rclassRC02636
KEGG koko:K03247,ko:K15744
KEGG ReactionR09655
KEGG Pathwayko00906,ko01100,ko01110,ko03013,ko05162,map00906,map01100,map01110,map03013,map05162
KEGG ModuleM00097
GOsGO:0001101,GO:0001944,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0004843,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005852,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006464,GO:0006508,GO:0006518,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007507,GO:0008135,GO:0008150,GO:0008152,GO:0008180,GO:0008233,GO:0008234,GO:0008593,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009733,GO:0009737,GO:0009743,GO:0009744,GO:0009746,GO:0009749,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0016282,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0023051,GO:0023056,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0033993,GO:0034248,GO:0034250,GO:0034284,GO:0034285,GO:0034286,GO:0034641,GO:0034645,GO:0036211,GO:0036459,GO:0042221,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045747,GO:0045948,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048880,GO:0048882,GO:0048925,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0060322,GO:0065007,GO:0070011,GO:0070647,GO:0070993,GO:0071541,GO:0071704,GO:0072358,GO:0072359,GO:0080090,GO:0097159,GO:0097305,GO:0101005,GO:0140096,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904,GO:2000112
Evalue3.54e-76
EggNOG OGsKOG1560@1|root,KOG1560@2759|Eukaryota
EC5.2.1.12
Descriptiontranslation initiation factor activity
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8936Ggra8936Gracilaria gracilis GNS1m malegenetig00000860_pilon 865386..866520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8936.t1Ggra8936.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 865386..866520 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8936.t1.start1Ggra8936.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 865386..865388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8936.t1.CDS1Ggra8936.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 865386..865448 +
Ggra8936.t1.CDS2Ggra8936.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 865549..866520 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8936.t1.exon1Ggra8936.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 865386..865448 +
Ggra8936.t1.exon2Ggra8936.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 865549..866520 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8936.t1.intron1Ggra8936.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 865449..865548 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8936.t1.stop1Ggra8936.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 866518..866520 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8936.t1 ID=Ggra8936.t1|Name=Ggra8936.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=345bp
MASAIDLRPSPQIQKVKLEGITVMKVIKHCHDNFPMTVMGQLLGMDVDDT
LEITNCYPFMSQPTSTSTTGPDGIDVTSFEREQQQYQRDMMWCVREVNID
HQVVGWYQSTGSQMGSFLSAQWIDTQYNYQKHLGNIVCLIYDPVRTEEGL
LSIHAYRLTKNFMNLMKKGDFNSLGFANTDVLANSIIEEVPISLHNSSLI
NASLVELDQADEFSGENDVELARLSISDKPVLEQSMEFLICELDTLGKEQ
SKYSYFMRNLVRSQGQLLEKMRKRRAENKKREANGEEPLPDDDDVIQMLE
KEPVRLECKILLKDLDSYVESIKSLASEGIVKQYGVSAVQAGDE*
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spliced messenger RNA

>Ggra8936.t1 ID=Ggra8936.t1|Name=Ggra8936.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00000860_pilon:865386..866520+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAGTGCAATTGACTTACGACCCTCTCCTCAAATTCAAAAAGTGAA
GCTGGAAGGAATTACAGTTATGAAAGTCATAAAACACTGCCATGACAACT
TTCCGATGACCGTCATGGGACAGCTTCTCGGTATGGATGTTGATGACACT
CTGGAAATTACTAACTGCTACCCTTTCATGTCACAACCAACGAGTACTTC
AACCACAGGCCCTGATGGAATTGATGTGACATCTTTTGAGAGAGAGCAAC
AGCAGTATCAGAGAGATATGATGTGGTGCGTTCGTGAAGTGAACATTGAT
CATCAAGTTGTCGGGTGGTATCAAAGTACGGGCTCCCAAATGGGCTCGTT
TTTGTCGGCCCAATGGATCGATACTCAGTACAACTACCAAAAGCATTTAG
GGAACATTGTCTGTCTTATATATGACCCGGTGAGAACGGAAGAGGGACTG
CTGTCTATACACGCATATCGATTGACAAAGAATTTCATGAATCTCATGAA
GAAAGGTGATTTTAACTCTCTTGGTTTTGCGAATACAGATGTTCTTGCCA
ATTCAATCATTGAGGAAGTTCCAATCTCACTCCACAATTCAAGCTTAATT
AATGCCTCGCTCGTAGAACTCGACCAAGCGGATGAGTTTTCGGGGGAAAA
CGACGTTGAGCTTGCCCGATTATCAATAAGCGATAAACCAGTCTTGGAGC
AAAGCATGGAGTTTTTGATATGCGAACTGGACACTCTTGGAAAGGAACAA
AGCAAGTACTCATATTTCATGAGAAACCTTGTGAGAAGTCAAGGCCAGTT
GTTGgagaagatgaggaagcgaagagcagaaaataagaagagGGAGGCTA
ATGGCGAGGAACCGCTTCCAGATGATGATGATGTCATCCAAATGCTCGAA
AAGGAGCCTGTGCGACTCGAGTGCAAGATTCTACTAAAGGATCTTGATTC
TTACGTAGAGAGCATAAAGTCCCTGGCTAGTGAAGGGATAGTCAAGCAAT
ATGGTGTCTCTGCCGTACAAGCTGGAGATGAATAA
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protein sequence of Ggra8936.t1

>Ggra8936.t1 ID=Ggra8936.t1|Name=Ggra8936.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=345bp
MASAIDLRPSPQIQKVKLEGITVMKVIKHCHDNFPMTVMGQLLGMDVDDT
LEITNCYPFMSQPTSTSTTGPDGIDVTSFEREQQQYQRDMMWCVREVNID
HQVVGWYQSTGSQMGSFLSAQWIDTQYNYQKHLGNIVCLIYDPVRTEEGL
LSIHAYRLTKNFMNLMKKGDFNSLGFANTDVLANSIIEEVPISLHNSSLI
NASLVELDQADEFSGENDVELARLSISDKPVLEQSMEFLICELDTLGKEQ
SKYSYFMRNLVRSQGQLLEKMRKRRAENKKREANGEEPLPDDDDVIQMLE
KEPVRLECKILLKDLDSYVESIKSLASEGIVKQYGVSAVQAGDE*
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mRNA from alignment at tig00000860_pilon:865386..866520+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8936.t1 ID=Ggra8936.t1|Name=Ggra8936.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1135bp|location=Sequence derived from alignment at tig00000860_pilon:865386..866520+ (Gracilaria gracilis GNS1m male)
ATGGCGAGTGCAATTGACTTACGACCCTCTCCTCAAATTCAAAAAGTGAA
GCTGGAAGGAATTGTACGTCAGAAAACACATCACGGTGAAGCCGCACGGT
GAACAAGATGATGATCTTATTGTAACTAACATCGAAACATTTGTTTTTTG
TCTATATACTTAGACAGTTATGAAAGTCATAAAACACTGCCATGACAACT
TTCCGATGACCGTCATGGGACAGCTTCTCGGTATGGATGTTGATGACACT
CTGGAAATTACTAACTGCTACCCTTTCATGTCACAACCAACGAGTACTTC
AACCACAGGCCCTGATGGAATTGATGTGACATCTTTTGAGAGAGAGCAAC
AGCAGTATCAGAGAGATATGATGTGGTGCGTTCGTGAAGTGAACATTGAT
CATCAAGTTGTCGGGTGGTATCAAAGTACGGGCTCCCAAATGGGCTCGTT
TTTGTCGGCCCAATGGATCGATACTCAGTACAACTACCAAAAGCATTTAG
GGAACATTGTCTGTCTTATATATGACCCGGTGAGAACGGAAGAGGGACTG
CTGTCTATACACGCATATCGATTGACAAAGAATTTCATGAATCTCATGAA
GAAAGGTGATTTTAACTCTCTTGGTTTTGCGAATACAGATGTTCTTGCCA
ATTCAATCATTGAGGAAGTTCCAATCTCACTCCACAATTCAAGCTTAATT
AATGCCTCGCTCGTAGAACTCGACCAAGCGGATGAGTTTTCGGGGGAAAA
CGACGTTGAGCTTGCCCGATTATCAATAAGCGATAAACCAGTCTTGGAGC
AAAGCATGGAGTTTTTGATATGCGAACTGGACACTCTTGGAAAGGAACAA
AGCAAGTACTCATATTTCATGAGAAACCTTGTGAGAAGTCAAGGCCAGTT
GTTGgagaagatgaggaagcgaagagcagaaaataagaagagGGAGGCTA
ATGGCGAGGAACCGCTTCCAGATGATGATGATGTCATCCAAATGCTCGAA
AAGGAGCCTGTGCGACTCGAGTGCAAGATTCTACTAAAGGATCTTGATTC
TTACGTAGAGAGCATAAAGTCCCTGGCTAGTGAAGGGATAGTCAAGCAAT
ATGGTGTCTCTGCCGTACAAGCTGGAGATGAATAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:865386..866520+

>Ggra8936.t1 ID=Ggra8936.t1|Name=Ggra8936.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1035bp|location=Sequence derived from alignment at tig00000860_pilon:865386..866520+ (Gracilaria gracilis GNS1m male)
ATGGCGAGTGCAATTGACTTACGACCCTCTCCTCAAATTCAAAAAGTGAA
GCTGGAAGGAATTACAGTTATGAAAGTCATAAAACACTGCCATGACAACT
TTCCGATGACCGTCATGGGACAGCTTCTCGGTATGGATGTTGATGACACT
CTGGAAATTACTAACTGCTACCCTTTCATGTCACAACCAACGAGTACTTC
AACCACAGGCCCTGATGGAATTGATGTGACATCTTTTGAGAGAGAGCAAC
AGCAGTATCAGAGAGATATGATGTGGTGCGTTCGTGAAGTGAACATTGAT
CATCAAGTTGTCGGGTGGTATCAAAGTACGGGCTCCCAAATGGGCTCGTT
TTTGTCGGCCCAATGGATCGATACTCAGTACAACTACCAAAAGCATTTAG
GGAACATTGTCTGTCTTATATATGACCCGGTGAGAACGGAAGAGGGACTG
CTGTCTATACACGCATATCGATTGACAAAGAATTTCATGAATCTCATGAA
GAAAGGTGATTTTAACTCTCTTGGTTTTGCGAATACAGATGTTCTTGCCA
ATTCAATCATTGAGGAAGTTCCAATCTCACTCCACAATTCAAGCTTAATT
AATGCCTCGCTCGTAGAACTCGACCAAGCGGATGAGTTTTCGGGGGAAAA
CGACGTTGAGCTTGCCCGATTATCAATAAGCGATAAACCAGTCTTGGAGC
AAAGCATGGAGTTTTTGATATGCGAACTGGACACTCTTGGAAAGGAACAA
AGCAAGTACTCATATTTCATGAGAAACCTTGTGAGAAGTCAAGGCCAGTT
GTTGgagaagatgaggaagcgaagagcagaaaataagaagagGGAGGCTA
ATGGCGAGGAACCGCTTCCAGATGATGATGATGTCATCCAAATGCTCGAA
AAGGAGCCTGTGCGACTCGAGTGCAAGATTCTACTAAAGGATCTTGATTC
TTACGTAGAGAGCATAAAGTCCCTGGCTAGTGAAGGGATAGTCAAGCAAT
ATGGTGTCTCTGCCGTACAAGCTGGAGATGAATAA
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