Ggra8934.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8934.t1
Unique Name	Ggra8934.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	743

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:859880..862108 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S314_65V6.1
PFAMs	TPR_8
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K12607
KEGG Pathway	ko03018,map03018
Evalue	1.83e-23
EggNOG OGs	KOG2471@1\|root,KOG2471@2759\|Eukaryota,37MMW@33090\|Viridiplantae,3G7V0@35493\|Streptophyta
Description	CCR4-NOT transcription complex subunit
COG category	S
BRITE	ko00000,ko00001,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8934	Ggra8934	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 859880..862108 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8934.t1.start1	Ggra8934.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 859880..859882 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8934.t1.CDS1	Ggra8934.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 859880..862108 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8934.t1.exon1	Ggra8934.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 859880..862108 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8934.t1.stop1	Ggra8934.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 862106..862108 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8934.t1	Ggra8934.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 859880..862108 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:859880..862108+
coding sequence from alignment at tig00000860_pilon:859880..862108+

mRNA sequence

>Ggra8934.t1 ID=Ggra8934.t1|Name=Ggra8934.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=743bp
MLQRYKLINDRHAVAIRTRSAAPVRYQKILSRPPPQFPWWDTPGRHKALS
ITAFPVLDKELCFPLASVVGAEYSAFFSQYCRTDAFPHAMAADAFTFFLQ
RDFAGVKQALLSLPESPKEAEGTKPSVEDPRVRHNWLLSAFYEQNSLQNV
EDLVLFIASTLPSKHKPSSATEFFSSVADDAASLKQTLTHLGPVALYNLT
VIAYHLGFLRSAVAIGDILYTNLEAMDDWLALRTCFLLIDIHLRFSDLAS
ASRVSSYAEKLLPDFSNSVEASNASSEIKILTPDWPTRSKCLIEEPISIE
DAKFCLHIYNARLSAISEQSTDGFRNIRNEAKNAVLAADNSQARPTAAVL
LVKARVEPNHQKGLYILASIVRQSSPTALHKILPLALNSLGILHHRLGCH
ALAACYFDHSRQAFLKLFVDSDKSAGAQKLCHLTSLSRVHNTHVAYNLAL
QYMQLSDFSKALDCFMICARSDYTYANSSPLLWIRIAECCVGIERNSGRP
LLAVEGQGRGRRFIMRAAERDEGLNMEYAATCARAAIMILDRQRIEAEEV
RVSPSKAKRNSRVLNSTLAVENGHGRPSSSSYSDEDVRLRSAALTLLAYS
SLSFDPKSVIIACKEIQKLFPNNNNDRTLLSRLYAAEACCMLDRPNDAAE
QLFPLVNSSIPDSAAREAAYINWALTQECSGDIATASRAAKVALKAFSSM
STSQQRYRSSRRDTIFAASYIFLRNGETDNARRCLRSLLGST*

spliced messenger RNA

>Ggra8934.t1 ID=Ggra8934.t1|Name=Ggra8934.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2229bp|location=Sequence derived from alignment at tig00000860_pilon:859880..862108+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTACAGCGATACAAATTGATCAATGATCGCCACGCCGTGGCCATCCG
GACTCGAAGCGCTGCGCCGGTTCGCTATCAAAAAATTCTCTCAAGACCAC
CACCCCAGTTTCCTTGGTGGGACACGCCGGGGAGGCATAAGGCTCTATCG
ATCACCGCCTTTCCAGTTCTGGATAAGGAGCTTTGCTTTCCCCTCGCATC
TGTTGTTGGTGCGGAATATAGCGCGTTTTTCTCGCAGTACTGCCGTACCG
ATGCTTTTCCACACGCAATGGCTGCCGACGCTTTTACCTTTTTTCTCCAA
CGCGACTTCGCCGGTGTTAAACAGGCTTTGCTTTCCCTCCCAGAGTCACC
AAAGGAAGCTGAGGGGACAAAGCCATCGGTAGAAGATCCTCGCGTAAGGC
ATAACTGGCTACTATCCGCGTTTTACGAACAAAATTCCCTACAGAATGTC
GAAGATCTGGTTTTGTTCATTGCTTCAACGCTTCCATCAAAACACAAGCC
TTCCTCAGCGACTGAATTCTTTTCTAGCGTTGCAGATGATGCGGCGTCAT
TGAAGCAAACCCTCACGCACCTCGGCCCAGTAGCTCTTTATAATCTAACC
GTAATCGCATATCACCTGGGGTTTTTGCGTTCCGCTGTTGCCATTGGCGA
CATTCTCTATACTAATCTAGAGGCTATGGATGACTGGCTCGCACTTAGAA
CTTGTTTTCTTCTGATCGACATCCATCTTCGTTTCTCTGATCTTGCTTCC
GCTTCAAGAGTTTCTTCATACGCAGAAAAACTTTTGCCGGACTTCTCGAA
TTCCGTTGAAGCTTCTAATGCTTCTTCGGAGATCAAGATTCTAACGCCAG
ACTGGCCTACACGCTCTAAATGCCTTATAGAGGAACCAATTTCTATCGAA
GACGCCAAGTTTTGCCTGCATATATACAACGCCCGTTTGAGTGCAATTTC
AGAGCAGTCTACGGACGGCTTCCGCAACATACGAAACGAGGCAAAGAATG
CAGTGCTGGCAGCGGACAATTCTCAAGCAAGACCCACAGCTGCTGTGCTT
CTCGTCAAGGCGCGAGTTGAACCCAACCATCAAAAAGGGCTTTACATTCT
TGCCAGCATTGTCAGACAGTCGTCACCAACTGCTCTACACAAGATCCTCC
CACTTGCGCTAAACAGTTTGGGTATCCTGCATCATCGACTGGGTTGTCAC
GCACTTGCAGCATGCTATTTCGATCACTCTCGCCAGGCATTTCTTAAACT
GTTTGTGGATAGTGATAAAAGTGCCGGTGCCCAGAAACTATGCCACCTCA
CGTCGCTTAGCCGCGTTCATAACACACATGTTGCTTACAATCTAGCCCTT
CAGTACATGCAGTTGAGCGACTTTTCAAAGGCTCTGGACTGCTTTATGAT
CTGTGCTCGCAGCGATTATACATATGCAAACAGTTCACCGCTTTTGTGGA
TTCGAATCGCCGAGTGCTGCGTTGGTATCGAACGAAACAGTGGTCGCCCA
CTTCTTGCAGTCGAAGGTCAAGGAAGAGGCCGCCGTTTTATCATGCGGGC
AGCCGAAAGAGATGAAGGACTCAACATGGAATACGCAGCCACATGTGCAA
GAGCTGCGATTATGATTCTAGACCGTCAAAGAATCGAAGCCGAGGAAGTT
CGAGTATCCCCTTCAAAAGCCAAGCGCAATTCCAGGGTACTGAACTCTAC
TCTAGCAGTCGAGAATGGTCATGGTCGCCCATCTTCGTCATCTTACTCCG
ATGAAGACGTGCGCCTACGCAGCGCTGCACTTACTCTTCTTGCATATTCG
TCTCTCTCCTTCGACCCCAAATCCGTTATCATCGCTTGCAAAGAAATCCA
GAAACTGTTTCCCAACAACAACAACGACAGAACCCTGCTCAGTCGCTTGT
ATGCCGCAGAGGCATGTTGCATGTTGGATCGACCCAATGACGCTGCCGAA
CAACTTTTCCCGCTGGTGAACTCCAGCATACCCGATTCTGCCGCAAGGGA
AGCGGCCTATATAAACTGGGCTTTGACACAGGAATGTAGTGGTGACATTG
CAACAGCATCTAGGGCTGCAAAGGTCGCCCTGAAGGCATTTAGCTCAATG
TCTACAAGCCAACAGCGATACCGCTCCTCACGGAGAGACACTATATTTGC
GGCATCATATATATTTCTTCGCAATGGAGAAACTGATAACGCCCGCCGAT
GTCTTCGGTCCTTATTAGGGTCAACGTAA

protein sequence of Ggra8934.t1

>Ggra8934.t1 ID=Ggra8934.t1|Name=Ggra8934.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=743bp
MLQRYKLINDRHAVAIRTRSAAPVRYQKILSRPPPQFPWWDTPGRHKALS
ITAFPVLDKELCFPLASVVGAEYSAFFSQYCRTDAFPHAMAADAFTFFLQ
RDFAGVKQALLSLPESPKEAEGTKPSVEDPRVRHNWLLSAFYEQNSLQNV
EDLVLFIASTLPSKHKPSSATEFFSSVADDAASLKQTLTHLGPVALYNLT
VIAYHLGFLRSAVAIGDILYTNLEAMDDWLALRTCFLLIDIHLRFSDLAS
ASRVSSYAEKLLPDFSNSVEASNASSEIKILTPDWPTRSKCLIEEPISIE
DAKFCLHIYNARLSAISEQSTDGFRNIRNEAKNAVLAADNSQARPTAAVL
LVKARVEPNHQKGLYILASIVRQSSPTALHKILPLALNSLGILHHRLGCH
ALAACYFDHSRQAFLKLFVDSDKSAGAQKLCHLTSLSRVHNTHVAYNLAL
QYMQLSDFSKALDCFMICARSDYTYANSSPLLWIRIAECCVGIERNSGRP
LLAVEGQGRGRRFIMRAAERDEGLNMEYAATCARAAIMILDRQRIEAEEV
RVSPSKAKRNSRVLNSTLAVENGHGRPSSSSYSDEDVRLRSAALTLLAYS
SLSFDPKSVIIACKEIQKLFPNNNNDRTLLSRLYAAEACCMLDRPNDAAE
QLFPLVNSSIPDSAAREAAYINWALTQECSGDIATASRAAKVALKAFSSM
STSQQRYRSSRRDTIFAASYIFLRNGETDNARRCLRSLLGST*

mRNA from alignment at tig00000860_pilon:859880..862108+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8934.t1 ID=Ggra8934.t1|Name=Ggra8934.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2229bp|location=Sequence derived from alignment at tig00000860_pilon:859880..862108+ (Gracilaria gracilis GNS1m male)
ATGTTACAGCGATACAAATTGATCAATGATCGCCACGCCGTGGCCATCCG
GACTCGAAGCGCTGCGCCGGTTCGCTATCAAAAAATTCTCTCAAGACCAC
CACCCCAGTTTCCTTGGTGGGACACGCCGGGGAGGCATAAGGCTCTATCG
ATCACCGCCTTTCCAGTTCTGGATAAGGAGCTTTGCTTTCCCCTCGCATC
TGTTGTTGGTGCGGAATATAGCGCGTTTTTCTCGCAGTACTGCCGTACCG
ATGCTTTTCCACACGCAATGGCTGCCGACGCTTTTACCTTTTTTCTCCAA
CGCGACTTCGCCGGTGTTAAACAGGCTTTGCTTTCCCTCCCAGAGTCACC
AAAGGAAGCTGAGGGGACAAAGCCATCGGTAGAAGATCCTCGCGTAAGGC
ATAACTGGCTACTATCCGCGTTTTACGAACAAAATTCCCTACAGAATGTC
GAAGATCTGGTTTTGTTCATTGCTTCAACGCTTCCATCAAAACACAAGCC
TTCCTCAGCGACTGAATTCTTTTCTAGCGTTGCAGATGATGCGGCGTCAT
TGAAGCAAACCCTCACGCACCTCGGCCCAGTAGCTCTTTATAATCTAACC
GTAATCGCATATCACCTGGGGTTTTTGCGTTCCGCTGTTGCCATTGGCGA
CATTCTCTATACTAATCTAGAGGCTATGGATGACTGGCTCGCACTTAGAA
CTTGTTTTCTTCTGATCGACATCCATCTTCGTTTCTCTGATCTTGCTTCC
GCTTCAAGAGTTTCTTCATACGCAGAAAAACTTTTGCCGGACTTCTCGAA
TTCCGTTGAAGCTTCTAATGCTTCTTCGGAGATCAAGATTCTAACGCCAG
ACTGGCCTACACGCTCTAAATGCCTTATAGAGGAACCAATTTCTATCGAA
GACGCCAAGTTTTGCCTGCATATATACAACGCCCGTTTGAGTGCAATTTC
AGAGCAGTCTACGGACGGCTTCCGCAACATACGAAACGAGGCAAAGAATG
CAGTGCTGGCAGCGGACAATTCTCAAGCAAGACCCACAGCTGCTGTGCTT
CTCGTCAAGGCGCGAGTTGAACCCAACCATCAAAAAGGGCTTTACATTCT
TGCCAGCATTGTCAGACAGTCGTCACCAACTGCTCTACACAAGATCCTCC
CACTTGCGCTAAACAGTTTGGGTATCCTGCATCATCGACTGGGTTGTCAC
GCACTTGCAGCATGCTATTTCGATCACTCTCGCCAGGCATTTCTTAAACT
GTTTGTGGATAGTGATAAAAGTGCCGGTGCCCAGAAACTATGCCACCTCA
CGTCGCTTAGCCGCGTTCATAACACACATGTTGCTTACAATCTAGCCCTT
CAGTACATGCAGTTGAGCGACTTTTCAAAGGCTCTGGACTGCTTTATGAT
CTGTGCTCGCAGCGATTATACATATGCAAACAGTTCACCGCTTTTGTGGA
TTCGAATCGCCGAGTGCTGCGTTGGTATCGAACGAAACAGTGGTCGCCCA
CTTCTTGCAGTCGAAGGTCAAGGAAGAGGCCGCCGTTTTATCATGCGGGC
AGCCGAAAGAGATGAAGGACTCAACATGGAATACGCAGCCACATGTGCAA
GAGCTGCGATTATGATTCTAGACCGTCAAAGAATCGAAGCCGAGGAAGTT
CGAGTATCCCCTTCAAAAGCCAAGCGCAATTCCAGGGTACTGAACTCTAC
TCTAGCAGTCGAGAATGGTCATGGTCGCCCATCTTCGTCATCTTACTCCG
ATGAAGACGTGCGCCTACGCAGCGCTGCACTTACTCTTCTTGCATATTCG
TCTCTCTCCTTCGACCCCAAATCCGTTATCATCGCTTGCAAAGAAATCCA
GAAACTGTTTCCCAACAACAACAACGACAGAACCCTGCTCAGTCGCTTGT
ATGCCGCAGAGGCATGTTGCATGTTGGATCGACCCAATGACGCTGCCGAA
CAACTTTTCCCGCTGGTGAACTCCAGCATACCCGATTCTGCCGCAAGGGA
AGCGGCCTATATAAACTGGGCTTTGACACAGGAATGTAGTGGTGACATTG
CAACAGCATCTAGGGCTGCAAAGGTCGCCCTGAAGGCATTTAGCTCAATG
TCTACAAGCCAACAGCGATACCGCTCCTCACGGAGAGACACTATATTTGC
GGCATCATATATATTTCTTCGCAATGGAGAAACTGATAACGCCCGCCGAT
GTCTTCGGTCCTTATTAGGGTCAACGTAA

Coding sequence (CDS) from alignment at tig00000860_pilon:859880..862108+

>Ggra8934.t1 ID=Ggra8934.t1|Name=Ggra8934.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2229bp|location=Sequence derived from alignment at tig00000860_pilon:859880..862108+ (Gracilaria gracilis GNS1m male)
ATGTTACAGCGATACAAATTGATCAATGATCGCCACGCCGTGGCCATCCG
GACTCGAAGCGCTGCGCCGGTTCGCTATCAAAAAATTCTCTCAAGACCAC
CACCCCAGTTTCCTTGGTGGGACACGCCGGGGAGGCATAAGGCTCTATCG
ATCACCGCCTTTCCAGTTCTGGATAAGGAGCTTTGCTTTCCCCTCGCATC
TGTTGTTGGTGCGGAATATAGCGCGTTTTTCTCGCAGTACTGCCGTACCG
ATGCTTTTCCACACGCAATGGCTGCCGACGCTTTTACCTTTTTTCTCCAA
CGCGACTTCGCCGGTGTTAAACAGGCTTTGCTTTCCCTCCCAGAGTCACC
AAAGGAAGCTGAGGGGACAAAGCCATCGGTAGAAGATCCTCGCGTAAGGC
ATAACTGGCTACTATCCGCGTTTTACGAACAAAATTCCCTACAGAATGTC
GAAGATCTGGTTTTGTTCATTGCTTCAACGCTTCCATCAAAACACAAGCC
TTCCTCAGCGACTGAATTCTTTTCTAGCGTTGCAGATGATGCGGCGTCAT
TGAAGCAAACCCTCACGCACCTCGGCCCAGTAGCTCTTTATAATCTAACC
GTAATCGCATATCACCTGGGGTTTTTGCGTTCCGCTGTTGCCATTGGCGA
CATTCTCTATACTAATCTAGAGGCTATGGATGACTGGCTCGCACTTAGAA
CTTGTTTTCTTCTGATCGACATCCATCTTCGTTTCTCTGATCTTGCTTCC
GCTTCAAGAGTTTCTTCATACGCAGAAAAACTTTTGCCGGACTTCTCGAA
TTCCGTTGAAGCTTCTAATGCTTCTTCGGAGATCAAGATTCTAACGCCAG
ACTGGCCTACACGCTCTAAATGCCTTATAGAGGAACCAATTTCTATCGAA
GACGCCAAGTTTTGCCTGCATATATACAACGCCCGTTTGAGTGCAATTTC
AGAGCAGTCTACGGACGGCTTCCGCAACATACGAAACGAGGCAAAGAATG
CAGTGCTGGCAGCGGACAATTCTCAAGCAAGACCCACAGCTGCTGTGCTT
CTCGTCAAGGCGCGAGTTGAACCCAACCATCAAAAAGGGCTTTACATTCT
TGCCAGCATTGTCAGACAGTCGTCACCAACTGCTCTACACAAGATCCTCC
CACTTGCGCTAAACAGTTTGGGTATCCTGCATCATCGACTGGGTTGTCAC
GCACTTGCAGCATGCTATTTCGATCACTCTCGCCAGGCATTTCTTAAACT
GTTTGTGGATAGTGATAAAAGTGCCGGTGCCCAGAAACTATGCCACCTCA
CGTCGCTTAGCCGCGTTCATAACACACATGTTGCTTACAATCTAGCCCTT
CAGTACATGCAGTTGAGCGACTTTTCAAAGGCTCTGGACTGCTTTATGAT
CTGTGCTCGCAGCGATTATACATATGCAAACAGTTCACCGCTTTTGTGGA
TTCGAATCGCCGAGTGCTGCGTTGGTATCGAACGAAACAGTGGTCGCCCA
CTTCTTGCAGTCGAAGGTCAAGGAAGAGGCCGCCGTTTTATCATGCGGGC
AGCCGAAAGAGATGAAGGACTCAACATGGAATACGCAGCCACATGTGCAA
GAGCTGCGATTATGATTCTAGACCGTCAAAGAATCGAAGCCGAGGAAGTT
CGAGTATCCCCTTCAAAAGCCAAGCGCAATTCCAGGGTACTGAACTCTAC
TCTAGCAGTCGAGAATGGTCATGGTCGCCCATCTTCGTCATCTTACTCCG
ATGAAGACGTGCGCCTACGCAGCGCTGCACTTACTCTTCTTGCATATTCG
TCTCTCTCCTTCGACCCCAAATCCGTTATCATCGCTTGCAAAGAAATCCA
GAAACTGTTTCCCAACAACAACAACGACAGAACCCTGCTCAGTCGCTTGT
ATGCCGCAGAGGCATGTTGCATGTTGGATCGACCCAATGACGCTGCCGAA
CAACTTTTCCCGCTGGTGAACTCCAGCATACCCGATTCTGCCGCAAGGGA
AGCGGCCTATATAAACTGGGCTTTGACACAGGAATGTAGTGGTGACATTG
CAACAGCATCTAGGGCTGCAAAGGTCGCCCTGAAGGCATTTAGCTCAATG
TCTACAAGCCAACAGCGATACCGCTCCTCACGGAGAGACACTATATTTGC
GGCATCATATATATTTCTTCGCAATGGAGAAACTGATAACGCCCGCCGAT
GTCTTCGGTCCTTATTAGGGTCAACGTAA