Ggra8932.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8932.t1
Unique NameGgra8932.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length333
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:855999..856997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173264.KI913949_gene4270
PFAMsDUF3611
Max annot lvl1117|Cyanobacteria
Evalue3.26e-17
EggNOG OGsCOG3038@1|root,COG3038@2|Bacteria,1G6R0@1117|Cyanobacteria,1HBY9@1150|Oscillatoriales
DescriptionProtein of unknown function (DUF3611)
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8932Ggra8932Gracilaria gracilis GNS1m malegenetig00000860_pilon 855999..856997 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8932.t1.stop1Ggra8932.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 855999..856001 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8932.t1.CDS1Ggra8932.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 855999..856997 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8932.t1.exon1Ggra8932.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 855999..856997 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8932.t1.start1Ggra8932.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 856995..856997 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8932.t1Ggra8932.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 855999..856997 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8932.t1 ID=Ggra8932.t1|Name=Ggra8932.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=333bp
MTRNANPAFVGSNLSTFLRINPCIGTSRRFITSRSRRAHERTAFYNSRAL
VIASLNSEGEGEPENETGSSERQSPQKGSVEDPGQFFTRLEEARKGRKEV
LNDVRSLETDPGNVGNKDVEISTKSAPLEQEAIPSGLQAASRALWRVGWF
TWWLQLVLTVIAAVILLFAFLFPGVNVRSAASAVGFAVSGVGIIFAFFSL
FWTYGYTRLALWLGEKQIQEKAKLRINRRLRFGLLFSITGMIILLLGLQA
IVGTLLARLLGTGVVSPYPPSPNAASGVVLSTSGLVQPVDILVVQACANG
LTGLLIALVSTIWFRARERKWTAKGNAAETSS*
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spliced messenger RNA

>Ggra8932.t1 ID=Ggra8932.t1|Name=Ggra8932.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00000860_pilon:855999..856997- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAGGAATGCCAACCCTGCATTTGTTGGCAGTAATCTGTCAACCTT
TCTAAGGATAAATCCTTGCATTGGTACATCTCGGCGATTCATTACATCAA
GATCTCGAAGAGCTCACGAAAGGACGGCTTTCTATAATAGTAGAGCTCTT
GTAATTGCTAGTTTGAATTCCGAAGGAGAAGGGGAGCCTGAGAATGAAAC
AGGAAGTTCAGAGAGGCAATCACCACAGAAAGGGTCTGTTGAAGATCCAG
GTCAATTCTTTACAAGACTTGAGGAAGCCCGAAAGGGAAGGAAAGAAGTG
CTTAATGATGTGAGGAGTTTAGAAACCGACCCCGGTAACGTGGGGAACAA
AGATGTTGAAATTTCTACGAAATCAGCGCCCCTTGAACAAGAAGCGATTC
CCTCTGGTCTGCAAGCTGCTTCCCGTGCACTGTGGCGTGTTGGGTGGTTT
ACTTGGTGGTTACAGCTGGTTCTCACAGTCATAGCTGCAGTCATTCTCTT
GTTCGCTTTTCTCTTCCCCGGTGTTAACGTTCGTTCCGCTGCGTCGGCGG
TGGGTTTCGCAGTTTCTGGAGTTGGGATTATATTTGCTTTCTTTAGTCTC
TTCTGGACATATGGGTACACAAGACTGGCTCTTTGGTTGGGGGAGAAGCA
GATCCAAGAGAAGGCCAAGCTACGAATAAATCGTAGATTGAGATTTGGGT
TGTTGTTTTCAATCACGGGTATGATCATCCTTCTTCTAGGGCTTCAGGCA
ATAGTGGGTACACTTCTAGCCCGTTTATTGGGAACTGGGGTTGTTTCTCC
GTATCCTCCTTCACCGAATGCTGCTAGCGGCGTTGTATTATCCACCTCAG
GACTTGTACAGCCCGTGGACATCCTTGTGGTCCAAGCTTGTGCAAACGGC
TTGACAGGGTTGCTTATTGCCCTTGTGTCTACGATATGGTTTCGGGCAAG
GGAGAGAAAGTGGACGGCAAAGGGGAATGCTGCCGAAACGTCTTCGTAG
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protein sequence of Ggra8932.t1

>Ggra8932.t1 ID=Ggra8932.t1|Name=Ggra8932.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=333bp
MTRNANPAFVGSNLSTFLRINPCIGTSRRFITSRSRRAHERTAFYNSRAL
VIASLNSEGEGEPENETGSSERQSPQKGSVEDPGQFFTRLEEARKGRKEV
LNDVRSLETDPGNVGNKDVEISTKSAPLEQEAIPSGLQAASRALWRVGWF
TWWLQLVLTVIAAVILLFAFLFPGVNVRSAASAVGFAVSGVGIIFAFFSL
FWTYGYTRLALWLGEKQIQEKAKLRINRRLRFGLLFSITGMIILLLGLQA
IVGTLLARLLGTGVVSPYPPSPNAASGVVLSTSGLVQPVDILVVQACANG
LTGLLIALVSTIWFRARERKWTAKGNAAETSS*
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mRNA from alignment at tig00000860_pilon:855999..856997-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8932.t1 ID=Ggra8932.t1|Name=Ggra8932.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00000860_pilon:855999..856997- (Gracilaria gracilis GNS1m male)
ATGACGAGGAATGCCAACCCTGCATTTGTTGGCAGTAATCTGTCAACCTT
TCTAAGGATAAATCCTTGCATTGGTACATCTCGGCGATTCATTACATCAA
GATCTCGAAGAGCTCACGAAAGGACGGCTTTCTATAATAGTAGAGCTCTT
GTAATTGCTAGTTTGAATTCCGAAGGAGAAGGGGAGCCTGAGAATGAAAC
AGGAAGTTCAGAGAGGCAATCACCACAGAAAGGGTCTGTTGAAGATCCAG
GTCAATTCTTTACAAGACTTGAGGAAGCCCGAAAGGGAAGGAAAGAAGTG
CTTAATGATGTGAGGAGTTTAGAAACCGACCCCGGTAACGTGGGGAACAA
AGATGTTGAAATTTCTACGAAATCAGCGCCCCTTGAACAAGAAGCGATTC
CCTCTGGTCTGCAAGCTGCTTCCCGTGCACTGTGGCGTGTTGGGTGGTTT
ACTTGGTGGTTACAGCTGGTTCTCACAGTCATAGCTGCAGTCATTCTCTT
GTTCGCTTTTCTCTTCCCCGGTGTTAACGTTCGTTCCGCTGCGTCGGCGG
TGGGTTTCGCAGTTTCTGGAGTTGGGATTATATTTGCTTTCTTTAGTCTC
TTCTGGACATATGGGTACACAAGACTGGCTCTTTGGTTGGGGGAGAAGCA
GATCCAAGAGAAGGCCAAGCTACGAATAAATCGTAGATTGAGATTTGGGT
TGTTGTTTTCAATCACGGGTATGATCATCCTTCTTCTAGGGCTTCAGGCA
ATAGTGGGTACACTTCTAGCCCGTTTATTGGGAACTGGGGTTGTTTCTCC
GTATCCTCCTTCACCGAATGCTGCTAGCGGCGTTGTATTATCCACCTCAG
GACTTGTACAGCCCGTGGACATCCTTGTGGTCCAAGCTTGTGCAAACGGC
TTGACAGGGTTGCTTATTGCCCTTGTGTCTACGATATGGTTTCGGGCAAG
GGAGAGAAAGTGGACGGCAAAGGGGAATGCTGCCGAAACGTCTTCGTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:855999..856997-

>Ggra8932.t1 ID=Ggra8932.t1|Name=Ggra8932.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=999bp|location=Sequence derived from alignment at tig00000860_pilon:855999..856997- (Gracilaria gracilis GNS1m male)
ATGACGAGGAATGCCAACCCTGCATTTGTTGGCAGTAATCTGTCAACCTT
TCTAAGGATAAATCCTTGCATTGGTACATCTCGGCGATTCATTACATCAA
GATCTCGAAGAGCTCACGAAAGGACGGCTTTCTATAATAGTAGAGCTCTT
GTAATTGCTAGTTTGAATTCCGAAGGAGAAGGGGAGCCTGAGAATGAAAC
AGGAAGTTCAGAGAGGCAATCACCACAGAAAGGGTCTGTTGAAGATCCAG
GTCAATTCTTTACAAGACTTGAGGAAGCCCGAAAGGGAAGGAAAGAAGTG
CTTAATGATGTGAGGAGTTTAGAAACCGACCCCGGTAACGTGGGGAACAA
AGATGTTGAAATTTCTACGAAATCAGCGCCCCTTGAACAAGAAGCGATTC
CCTCTGGTCTGCAAGCTGCTTCCCGTGCACTGTGGCGTGTTGGGTGGTTT
ACTTGGTGGTTACAGCTGGTTCTCACAGTCATAGCTGCAGTCATTCTCTT
GTTCGCTTTTCTCTTCCCCGGTGTTAACGTTCGTTCCGCTGCGTCGGCGG
TGGGTTTCGCAGTTTCTGGAGTTGGGATTATATTTGCTTTCTTTAGTCTC
TTCTGGACATATGGGTACACAAGACTGGCTCTTTGGTTGGGGGAGAAGCA
GATCCAAGAGAAGGCCAAGCTACGAATAAATCGTAGATTGAGATTTGGGT
TGTTGTTTTCAATCACGGGTATGATCATCCTTCTTCTAGGGCTTCAGGCA
ATAGTGGGTACACTTCTAGCCCGTTTATTGGGAACTGGGGTTGTTTCTCC
GTATCCTCCTTCACCGAATGCTGCTAGCGGCGTTGTATTATCCACCTCAG
GACTTGTACAGCCCGTGGACATCCTTGTGGTCCAAGCTTGTGCAAACGGC
TTGACAGGGTTGCTTATTGCCCTTGTGTCTACGATATGGTTTCGGGCAAG
GGAGAGAAAGTGGACGGCAAAGGGGAATGCTGCCGAAACGTCTTCGTAG
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