Ggra8931.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8931.t1
Unique Name	Ggra8931.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	597

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:853900..855690 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703171.1
PFAMs	FKBP_C,TPR_1,TPR_8
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K09571,ko:K20097
KEGG Pathway	ko04915,map04915
Evalue	2.83e-128
EggNOG OGs	COG0545@1\|root,KOG0543@2759\|Eukaryota
EC	5.2.1.8
Description	FK506 binding
COG category	O
BRITE	ko00000,ko00001,ko01000,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8931	Ggra8931	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 853900..855690 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8931.t1.start1	Ggra8931.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 853900..853902 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8931.t1.CDS1	Ggra8931.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 853900..855690 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8931.t1.exon1	Ggra8931.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 853900..855690 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8931.t1.stop1	Ggra8931.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 855688..855690 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8931.t1	Ggra8931.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 853900..855690 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:853900..855690+
coding sequence from alignment at tig00000860_pilon:853900..855690+

mRNA sequence

>Ggra8931.t1 ID=Ggra8931.t1|Name=Ggra8931.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=597bp
MTKEDVTVETSKPTPDSEFSQFGDLTGDGGVVKEILTHGENAWQKPEDGD
DVSMHYRGTLLDGTEFDSSYERNTPFKFKLGDGKVIKGWDVVGKTMAKGE
KAKVTLKPEYAYGENGSPPKIPANATLVFEMELLSWTSRRDVFGDGLVVK
SEIASGDGWERPGKLDEVTVAVVCTEMDPDGRTPHAELYNGVVTFTNGTG
QVPPAWEKVVSDMKKDAILSLVCRGPHVSGPGITYVPANTECVQFKLTMK
SWKKVDDIHKDGSLVKKVMVEGEGWERPNDGSIVTIAAKFYHPAMDSSLL
VPPPEGEPYLTIEELTFKVGDGVVVDGLDRVVQSMKKEESAVVMIHPKHA
FEAAPDLLTTQFSDMGVTKETSLLVDLTISKFEKAKDVWSMSDEEKLEEM
RTRKQVGNDLFKKSRYPAAQKSYDRAVAFFDSPSSELSADLKSKVNELLV
QCHINLAVCLDRMGDTQKVMNHCKKALELAPSNVKALYRQGCAYLKMDDF
YNASSTLKYALQLSPGNLDVRRKLKEVKSQQLAQDAADKKLYSNLFGRLS
KMEEKENRTGEVQENGHSNLSAKDMEEPQKSEDVEMKEAPAVVENK*

spliced messenger RNA

>Ggra8931.t1 ID=Ggra8931.t1|Name=Ggra8931.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1791bp|location=Sequence derived from alignment at tig00000860_pilon:853900..855690+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAAGGAAGACGTCACTGTTGAGACCTCCAAACCCACCCCAGACTC
TGAATTCTCACAGTTTGGTGATCTAACTGGAGACGGAGGCGTCGTTAAAG
AGATCCTCACCCACGGAGAAAATGCGTGGCAGAAGCCGGAAGATGGCGAT
GATGTATCTATGCATTACAGGGGCACCTTGCTCGACGGTACTGAGTTTGA
TAGCAGCTATGAGCGAAACACGCCTTTCAAGTTTAAGCTCGGAGATGGTA
AAGTTATCAAGGGCTGGGACGTTGTTGGAAAGACAATGGCTAAAGGGGAG
AAGGCTAAGGTAACCCTTAAGCCCGAGTATGCTTATGGAGAAAACGGATC
ACCTCCTAAGATTCCTGCTAACGCAACCTTGGTGTTTGAGATGGAGCTCC
TTTCATGGACCAGTAGACGCGATGTGTTCGGCGATGGACTTGTCGTAAAG
AGTGAAATTGCTTCCGGAGATGGATGGGAACGACCTGGTAAGCTTGACGA
GGTTACTGTTGCCGTTGTTTGCACCGAGATGGATCCAGACGGAAGGACCC
CGCACGCTGAGTTGTACAATGGAGTAGTCACTTTTACAAATGGAACCGGG
CAAGTTCCACCAGCCTGGGAGAAAGTTGTGTCAGACATGAAGAAGGACGC
AATCCTTAGCCTCGTATGTCGTGGTCCTCACGTTTCCGGGCCTGGGATCA
CATATGTCCCAGCAAACACAGAATGTGTCCAGTTCAAGCTGACCATGAAG
TCCTGGAAGAAGGTTGATGACATCCACAAAGATGGCTCTCTCGTCAAGAA
AGTCATGGTAGAGGGCGAAGGCTGGGAGCGACCAAACGATGGTTCGATTG
TTACAATAGCAGCAAAGTTCTACCATCCCGCGATGGACTCCAGCTTATTA
GTTCCTCCGCCTGAGGGCGAGCCATATCTTACGATAGAAGAGCTCACCTT
CAAGGTTGGGGACGGCGTCGTCGTTGATGGTCTAGATCGCGTTGTTCAGT
CTATGAAGAAAGAAGAGTCAGCTGTTGTCATGATTCACCCGAAGCACGCC
TTTGAGGCAGCACCCGATCTACTCACGACACAGTTTTCTGACATGGGGGT
AACTAAGGAGACTAGTTTACTGGTGGACCTTACGATATCCAAGTTTGAAA
AGGCAAAAGATGTGTGGAGCATGTCGGATGAAGAGAAGTTAGAAGAGATG
AGGACTAGGAAACAAGTCGGAAACGACCTGTTTAAGAAGAGCAGATACCC
AGCGGCGCAGAAATCGTATGATCGTGCAGTCGCATTCTTCGACTCTCCGT
CGTCCGAGCTCAGCGCCGATCTCAAGTCTAAGGTTAACGAGCTTCTCGTG
CAGTGCCACATTAACTTAGCTGTGTGCTTAGATCGCATGGGAGACACTCA
GAAAGTAATGAATCACTGCAAGAAAGCCCTCGAGCTTGCTCCGTCGAATG
TGAAGGCTCTCTATCGTCAGGGCTGTGCCTACCTTAAGATGGATGACTTC
TACAATGCCAGTTCCACTTTGAAATACGCTCTGCAGCTTAGTCCTGGAAA
CTTAGATGTGCGTCGAAAGCTGAAGGAAGTTAAGTCACAGCAGCTCGCTC
AGGACGCAGCGGACAAGAAGTTGTACTCGAACCTCTTCGGCAGATTGAGT
AAGATGGAGGAAAAGGAGAACAGGACAGGTGAAGTTCAAGAGAATGGCCA
CTCCAACCTCTCAGCGAAGGATATGGAGGAGCCGCAGAAATCAGAGGACG
TTGAGATGAAGGAAGCCCCAGCTGTCGTAGAGAACAAATAA

protein sequence of Ggra8931.t1

>Ggra8931.t1 ID=Ggra8931.t1|Name=Ggra8931.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=597bp
MTKEDVTVETSKPTPDSEFSQFGDLTGDGGVVKEILTHGENAWQKPEDGD
DVSMHYRGTLLDGTEFDSSYERNTPFKFKLGDGKVIKGWDVVGKTMAKGE
KAKVTLKPEYAYGENGSPPKIPANATLVFEMELLSWTSRRDVFGDGLVVK
SEIASGDGWERPGKLDEVTVAVVCTEMDPDGRTPHAELYNGVVTFTNGTG
QVPPAWEKVVSDMKKDAILSLVCRGPHVSGPGITYVPANTECVQFKLTMK
SWKKVDDIHKDGSLVKKVMVEGEGWERPNDGSIVTIAAKFYHPAMDSSLL
VPPPEGEPYLTIEELTFKVGDGVVVDGLDRVVQSMKKEESAVVMIHPKHA
FEAAPDLLTTQFSDMGVTKETSLLVDLTISKFEKAKDVWSMSDEEKLEEM
RTRKQVGNDLFKKSRYPAAQKSYDRAVAFFDSPSSELSADLKSKVNELLV
QCHINLAVCLDRMGDTQKVMNHCKKALELAPSNVKALYRQGCAYLKMDDF
YNASSTLKYALQLSPGNLDVRRKLKEVKSQQLAQDAADKKLYSNLFGRLS
KMEEKENRTGEVQENGHSNLSAKDMEEPQKSEDVEMKEAPAVVENK*

mRNA from alignment at tig00000860_pilon:853900..855690+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8931.t1 ID=Ggra8931.t1|Name=Ggra8931.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1791bp|location=Sequence derived from alignment at tig00000860_pilon:853900..855690+ (Gracilaria gracilis GNS1m male)
ATGACAAAGGAAGACGTCACTGTTGAGACCTCCAAACCCACCCCAGACTC
TGAATTCTCACAGTTTGGTGATCTAACTGGAGACGGAGGCGTCGTTAAAG
AGATCCTCACCCACGGAGAAAATGCGTGGCAGAAGCCGGAAGATGGCGAT
GATGTATCTATGCATTACAGGGGCACCTTGCTCGACGGTACTGAGTTTGA
TAGCAGCTATGAGCGAAACACGCCTTTCAAGTTTAAGCTCGGAGATGGTA
AAGTTATCAAGGGCTGGGACGTTGTTGGAAAGACAATGGCTAAAGGGGAG
AAGGCTAAGGTAACCCTTAAGCCCGAGTATGCTTATGGAGAAAACGGATC
ACCTCCTAAGATTCCTGCTAACGCAACCTTGGTGTTTGAGATGGAGCTCC
TTTCATGGACCAGTAGACGCGATGTGTTCGGCGATGGACTTGTCGTAAAG
AGTGAAATTGCTTCCGGAGATGGATGGGAACGACCTGGTAAGCTTGACGA
GGTTACTGTTGCCGTTGTTTGCACCGAGATGGATCCAGACGGAAGGACCC
CGCACGCTGAGTTGTACAATGGAGTAGTCACTTTTACAAATGGAACCGGG
CAAGTTCCACCAGCCTGGGAGAAAGTTGTGTCAGACATGAAGAAGGACGC
AATCCTTAGCCTCGTATGTCGTGGTCCTCACGTTTCCGGGCCTGGGATCA
CATATGTCCCAGCAAACACAGAATGTGTCCAGTTCAAGCTGACCATGAAG
TCCTGGAAGAAGGTTGATGACATCCACAAAGATGGCTCTCTCGTCAAGAA
AGTCATGGTAGAGGGCGAAGGCTGGGAGCGACCAAACGATGGTTCGATTG
TTACAATAGCAGCAAAGTTCTACCATCCCGCGATGGACTCCAGCTTATTA
GTTCCTCCGCCTGAGGGCGAGCCATATCTTACGATAGAAGAGCTCACCTT
CAAGGTTGGGGACGGCGTCGTCGTTGATGGTCTAGATCGCGTTGTTCAGT
CTATGAAGAAAGAAGAGTCAGCTGTTGTCATGATTCACCCGAAGCACGCC
TTTGAGGCAGCACCCGATCTACTCACGACACAGTTTTCTGACATGGGGGT
AACTAAGGAGACTAGTTTACTGGTGGACCTTACGATATCCAAGTTTGAAA
AGGCAAAAGATGTGTGGAGCATGTCGGATGAAGAGAAGTTAGAAGAGATG
AGGACTAGGAAACAAGTCGGAAACGACCTGTTTAAGAAGAGCAGATACCC
AGCGGCGCAGAAATCGTATGATCGTGCAGTCGCATTCTTCGACTCTCCGT
CGTCCGAGCTCAGCGCCGATCTCAAGTCTAAGGTTAACGAGCTTCTCGTG
CAGTGCCACATTAACTTAGCTGTGTGCTTAGATCGCATGGGAGACACTCA
GAAAGTAATGAATCACTGCAAGAAAGCCCTCGAGCTTGCTCCGTCGAATG
TGAAGGCTCTCTATCGTCAGGGCTGTGCCTACCTTAAGATGGATGACTTC
TACAATGCCAGTTCCACTTTGAAATACGCTCTGCAGCTTAGTCCTGGAAA
CTTAGATGTGCGTCGAAAGCTGAAGGAAGTTAAGTCACAGCAGCTCGCTC
AGGACGCAGCGGACAAGAAGTTGTACTCGAACCTCTTCGGCAGATTGAGT
AAGATGGAGGAAAAGGAGAACAGGACAGGTGAAGTTCAAGAGAATGGCCA
CTCCAACCTCTCAGCGAAGGATATGGAGGAGCCGCAGAAATCAGAGGACG
TTGAGATGAAGGAAGCCCCAGCTGTCGTAGAGAACAAATAA

Coding sequence (CDS) from alignment at tig00000860_pilon:853900..855690+

>Ggra8931.t1 ID=Ggra8931.t1|Name=Ggra8931.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1791bp|location=Sequence derived from alignment at tig00000860_pilon:853900..855690+ (Gracilaria gracilis GNS1m male)
ATGACAAAGGAAGACGTCACTGTTGAGACCTCCAAACCCACCCCAGACTC
TGAATTCTCACAGTTTGGTGATCTAACTGGAGACGGAGGCGTCGTTAAAG
AGATCCTCACCCACGGAGAAAATGCGTGGCAGAAGCCGGAAGATGGCGAT
GATGTATCTATGCATTACAGGGGCACCTTGCTCGACGGTACTGAGTTTGA
TAGCAGCTATGAGCGAAACACGCCTTTCAAGTTTAAGCTCGGAGATGGTA
AAGTTATCAAGGGCTGGGACGTTGTTGGAAAGACAATGGCTAAAGGGGAG
AAGGCTAAGGTAACCCTTAAGCCCGAGTATGCTTATGGAGAAAACGGATC
ACCTCCTAAGATTCCTGCTAACGCAACCTTGGTGTTTGAGATGGAGCTCC
TTTCATGGACCAGTAGACGCGATGTGTTCGGCGATGGACTTGTCGTAAAG
AGTGAAATTGCTTCCGGAGATGGATGGGAACGACCTGGTAAGCTTGACGA
GGTTACTGTTGCCGTTGTTTGCACCGAGATGGATCCAGACGGAAGGACCC
CGCACGCTGAGTTGTACAATGGAGTAGTCACTTTTACAAATGGAACCGGG
CAAGTTCCACCAGCCTGGGAGAAAGTTGTGTCAGACATGAAGAAGGACGC
AATCCTTAGCCTCGTATGTCGTGGTCCTCACGTTTCCGGGCCTGGGATCA
CATATGTCCCAGCAAACACAGAATGTGTCCAGTTCAAGCTGACCATGAAG
TCCTGGAAGAAGGTTGATGACATCCACAAAGATGGCTCTCTCGTCAAGAA
AGTCATGGTAGAGGGCGAAGGCTGGGAGCGACCAAACGATGGTTCGATTG
TTACAATAGCAGCAAAGTTCTACCATCCCGCGATGGACTCCAGCTTATTA
GTTCCTCCGCCTGAGGGCGAGCCATATCTTACGATAGAAGAGCTCACCTT
CAAGGTTGGGGACGGCGTCGTCGTTGATGGTCTAGATCGCGTTGTTCAGT
CTATGAAGAAAGAAGAGTCAGCTGTTGTCATGATTCACCCGAAGCACGCC
TTTGAGGCAGCACCCGATCTACTCACGACACAGTTTTCTGACATGGGGGT
AACTAAGGAGACTAGTTTACTGGTGGACCTTACGATATCCAAGTTTGAAA
AGGCAAAAGATGTGTGGAGCATGTCGGATGAAGAGAAGTTAGAAGAGATG
AGGACTAGGAAACAAGTCGGAAACGACCTGTTTAAGAAGAGCAGATACCC
AGCGGCGCAGAAATCGTATGATCGTGCAGTCGCATTCTTCGACTCTCCGT
CGTCCGAGCTCAGCGCCGATCTCAAGTCTAAGGTTAACGAGCTTCTCGTG
CAGTGCCACATTAACTTAGCTGTGTGCTTAGATCGCATGGGAGACACTCA
GAAAGTAATGAATCACTGCAAGAAAGCCCTCGAGCTTGCTCCGTCGAATG
TGAAGGCTCTCTATCGTCAGGGCTGTGCCTACCTTAAGATGGATGACTTC
TACAATGCCAGTTCCACTTTGAAATACGCTCTGCAGCTTAGTCCTGGAAA
CTTAGATGTGCGTCGAAAGCTGAAGGAAGTTAAGTCACAGCAGCTCGCTC
AGGACGCAGCGGACAAGAAGTTGTACTCGAACCTCTTCGGCAGATTGAGT
AAGATGGAGGAAAAGGAGAACAGGACAGGTGAAGTTCAAGAGAATGGCCA
CTCCAACCTCTCAGCGAAGGATATGGAGGAGCCGCAGAAATCAGAGGACG
TTGAGATGAAGGAAGCCCCAGCTGTCGTAGAGAACAAATAA