Ggra8930.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8930.t1
Unique NameGgra8930.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length251
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:851085..852493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMF111CT
Preferred nameSEC22B
PFAMsLongin,Synaptobrevin
Max annot lvl2759|Eukaryota
KEGG koko:K08517
KEGG Pathwayko04130,ko04145,ko05134,map04130,map04145,map05134
GOsGO:0000139,GO:0000149,GO:0002376,GO:0002474,GO:0002478,GO:0002479,GO:0002790,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005886,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006900,GO:0006901,GO:0006903,GO:0006906,GO:0006996,GO:0007154,GO:0007267,GO:0008104,GO:0008150,GO:0009306,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009987,GO:0010506,GO:0010507,GO:0010604,GO:0010639,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016241,GO:0016242,GO:0019222,GO:0019882,GO:0019884,GO:0019905,GO:0022607,GO:0023052,GO:0023061,GO:0030133,GO:0030134,GO:0030135,GO:0030139,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030666,GO:0030670,GO:0031090,GO:0031201,GO:0031224,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031982,GO:0031984,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033116,GO:0034613,GO:0042175,GO:0042176,GO:0042590,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044087,GO:0044088,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045335,GO:0045732,GO:0046903,GO:0046907,GO:0048002,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048279,GO:0048280,GO:0048284,GO:0048518,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060255,GO:0061024,GO:0061025,GO:0061355,GO:0065003,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090114,GO:0090174,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0198738,GO:1902115,GO:1902116,GO:1902902,GO:1990668,GO:2000785
Evalue4.01e-47
EggNOG OGsCOG5143@1|root,KOG0862@2759|Eukaryota
Descriptionvesicle fusion with Golgi apparatus
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8930Ggra8930Gracilaria gracilis GNS1m malegenetig00000860_pilon 851085..852493 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8930.t1.stop1Ggra8930.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 851085..851087 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8930.t1.CDS1Ggra8930.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 851085..851288 -
Ggra8930.t1.CDS2Ggra8930.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 851378..851422 -
Ggra8930.t1.CDS3Ggra8930.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000860_pilon 851625..851755 -
Ggra8930.t1.CDS4Ggra8930.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000860_pilon 851849..852091 -
Ggra8930.t1.CDS5Ggra8930.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000860_pilon 852196..852227 -
Ggra8930.t1.CDS6Ggra8930.t1.CDS6Gracilaria gracilis GNS1m maleCDStig00000860_pilon 852277..852284 -
Ggra8930.t1.CDS7Ggra8930.t1.CDS7Gracilaria gracilis GNS1m maleCDStig00000860_pilon 852404..852493 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8930.t1.exon1Ggra8930.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 851085..851288 -
Ggra8930.t1.exon2Ggra8930.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 851378..851422 -
Ggra8930.t1.exon3Ggra8930.t1.exon3Gracilaria gracilis GNS1m maleexontig00000860_pilon 851625..851755 -
Ggra8930.t1.exon4Ggra8930.t1.exon4Gracilaria gracilis GNS1m maleexontig00000860_pilon 851849..852091 -
Ggra8930.t1.exon5Ggra8930.t1.exon5Gracilaria gracilis GNS1m maleexontig00000860_pilon 852196..852227 -
Ggra8930.t1.exon6Ggra8930.t1.exon6Gracilaria gracilis GNS1m maleexontig00000860_pilon 852277..852284 -
Ggra8930.t1.exon7Ggra8930.t1.exon7Gracilaria gracilis GNS1m maleexontig00000860_pilon 852404..852493 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8930.t1.intron1Ggra8930.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 851289..851377 -
Ggra8930.t1.intron2Ggra8930.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000860_pilon 851423..851624 -
Ggra8930.t1.intron3Ggra8930.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000860_pilon 851756..851848 -
Ggra8930.t1.intron4Ggra8930.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000860_pilon 852092..852195 -
Ggra8930.t1.intron5Ggra8930.t1.intron5Gracilaria gracilis GNS1m maleintrontig00000860_pilon 852228..852276 -
Ggra8930.t1.intron6Ggra8930.t1.intron6Gracilaria gracilis GNS1m maleintrontig00000860_pilon 852285..852403 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8930.t1.start1Ggra8930.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 852491..852493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8930.t1Ggra8930.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 851085..852493 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8930.t1 ID=Ggra8930.t1|Name=Ggra8930.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=251bp
MPKVTLIARLTDGLPLAASMADEKDAYAKELETTLSLQTIKKMTFDYLDE
LRKEFFQVYGNQVQSASRPYEFIRFDTFIQKTKKVYNDSKTQRNLQKLNS
ELKDVHSIMTKNINEVISRGERLENVAQKSTRLAQESKRYAAQAKHANRM
RIVRQYAPIGIVVAVVVLPEKKLIWSVKRKSKRSRAVFPRLQWIPPRNNA
CLRNEGRNISICIRRSDNIPPCDMIRNEIVGVLENTFLVDNHMLNRFSYM
*
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spliced messenger RNA

>Ggra8930.t1 ID=Ggra8930.t1|Name=Ggra8930.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00000860_pilon:851085..852493- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTAAAGTGACACTCATAGCACGCCTCACAGATGGCCTTCCGCTTGC
GGCCTCGATGGCAGACGAAAAGGACGCCTACGCGAAAGAGCTCGAGACAA
CGTTATCTCTTCAAACCATCAAAAAGATGACATTCGATTACCTAGATGAG
CTTCGAAAAGAGTTTTTCCAAGTGTACGGAAATCAGGTGCAGTCAGCATC
TAGGCCGTACGAGTTCATTCGATTTGACACGTTCATTCAGAAGACGAAGA
AAGTGTACAATGATTCCAAGACACAAAGAAATTTGCAAAAGCTCAATTCA
GAGCTCAAAGACGTCCACTCCATAATGACTAAGAACATCAATGAAGTCAT
TTCAAGAGGAGAAAGGTTGGAGAACGTTGCACAGAAATCTACGAGACTCG
CTCAAGAATCTAAAAGGTATGCGGCGCAAGCAAAGCATGCAAATCGAATG
CGTATTGTGAGGCAATATGCTCCCATTGGAATCGTAGTTGCTGTTGTAGT
CTTGCCGGAGAAAAAGCTCATCTGGAGTGTCAAGAGGAAATCAAAACGGT
CTAGAGCTGTTTTTCCACGCCTCCAATGGATTCCACCGAGGAACAATGCT
TGTTTACGGAATGAGGGTCGAAATATATCTATTTGTATCAGGAGGTCCGA
CAATATTCCTCCTTGCGACATGATACGAAACGAAATCGTAGGGGTTTTAG
AGAACACATTCCTCGTGGACAATCACATGCTTAATCGCTTTTCATACATG
TAG
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protein sequence of Ggra8930.t1

>Ggra8930.t1 ID=Ggra8930.t1|Name=Ggra8930.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=251bp
MPKVTLIARLTDGLPLAASMADEKDAYAKELETTLSLQTIKKMTFDYLDE
LRKEFFQVYGNQVQSASRPYEFIRFDTFIQKTKKVYNDSKTQRNLQKLNS
ELKDVHSIMTKNINEVISRGERLENVAQKSTRLAQESKRYAAQAKHANRM
RIVRQYAPIGIVVAVVVLPEKKLIWSVKRKSKRSRAVFPRLQWIPPRNNA
CLRNEGRNISICIRRSDNIPPCDMIRNEIVGVLENTFLVDNHMLNRFSYM
*
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mRNA from alignment at tig00000860_pilon:851085..852493-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8930.t1 ID=Ggra8930.t1|Name=Ggra8930.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1409bp|location=Sequence derived from alignment at tig00000860_pilon:851085..852493- (Gracilaria gracilis GNS1m male)
ATGCCTAAAGTGACACTCATAGCACGCCTCACAGATGGCCTTCCGCTTGC
GGCCTCGATGGCAGACGAAAAGGACGCCTACGCGAAAGAGGTGAGTATTG
CAGAATATGCTTTTAGTCTGTTCTTCAAAGAATTCTCGATGCGTCGATCA
CGCAAACCCCTGGTTAATGGACGAACTACAGAATTACTGACGAATAAGTT
ACATCACAGCTCGAGACGTACGAAAGACAAGCGAAGAAACTTGTGCGATC
TTTGGCATCTTCACAGAACGTTATCTCTTCAAACCATCAAAAAGATGAGT
ATGTAACTGTTGAATCTGGGCCTTACTTTTGTTTTCATTATGTGCTCTCC
TCCGGCGTCTGCATTCTCACGTTGACTGAACGCGCTTACCCAAAACGTCT
AGCATTCGATTACCTAGATGAGCTTCGAAAAGAGTTTTTCCAAGTGTACG
GAAATCAGGTGCAGTCAGCATCTAGGCCGTACGAGTTCATTCGATTTGAC
ACGTTCATTCAGAAGACGAAGAAAGTGTACAATGATTCCAAGACACAAAG
AAATTTGCAAAAGCTCAATTCAGAGCTCAAAGACGTCCACTCCATAATGA
CTAAGAACATCAATGAAGTCATTTCAAGAGGAGAAAGGTTGGAGAGTAAG
TAACACAGGGAGGTTTGTTTTTGCACTGAACGGTGACCATTAACTGTTCT
CTGACTAATTTGTATGTCACGACTTGACCCATTCGAAGACGTTGCACAGA
AATCTACGAGACTCGCTCAAGAATCTAAAAGGTATGCGGCGCAAGCAAAG
CATGCAAATCGAATGCGTATTGTGAGGCAATATGCTCCCATTGGAATCGT
AGTTGCTGTTGTAGTCTTGGTATGGCTCATCACCAGAAGGCTATGGTGAA
ACCTTTTCCAAACGAAATAACTATTCTTCGGATATCGCGATTTCGAAAGT
TTCAACTCGTATGTCGGCTTCGCTTGTGCTCGTACGTGCTTCCTTTTATC
GGAGTGTGTCTAAACAATCTGCATGATGGAATTTCGAAGTCACTACTCGG
AGCTCTCGCCTTTGTCCACAGCCGGAGAAAAAGCTCATCTGGAGTGTCAA
GAGGAAATCAAAACGGGTAACTTCTCTACCTATACGTCGAATAATCGTCT
ACGTCCACCGTACCCTTACGTAGATAGACTTCCACGATTCTAACATAAGC
GAAAGTCTAGAGCTGTTTTTCCACGCCTCCAATGGATTCCACCGAGGAAC
AATGCTTGTTTACGGAATGAGGGTCGAAATATATCTATTTGTATCAGGAG
GTCCGACAATATTCCTCCTTGCGACATGATACGAAACGAAATCGTAGGGG
TTTTAGAGAACACATTCCTCGTGGACAATCACATGCTTAATCGCTTTTCA
TACATGTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:851085..852493-

>Ggra8930.t1 ID=Ggra8930.t1|Name=Ggra8930.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=753bp|location=Sequence derived from alignment at tig00000860_pilon:851085..852493- (Gracilaria gracilis GNS1m male)
ATGCCTAAAGTGACACTCATAGCACGCCTCACAGATGGCCTTCCGCTTGC
GGCCTCGATGGCAGACGAAAAGGACGCCTACGCGAAAGAGCTCGAGACAA
CGTTATCTCTTCAAACCATCAAAAAGATGACATTCGATTACCTAGATGAG
CTTCGAAAAGAGTTTTTCCAAGTGTACGGAAATCAGGTGCAGTCAGCATC
TAGGCCGTACGAGTTCATTCGATTTGACACGTTCATTCAGAAGACGAAGA
AAGTGTACAATGATTCCAAGACACAAAGAAATTTGCAAAAGCTCAATTCA
GAGCTCAAAGACGTCCACTCCATAATGACTAAGAACATCAATGAAGTCAT
TTCAAGAGGAGAAAGGTTGGAGAACGTTGCACAGAAATCTACGAGACTCG
CTCAAGAATCTAAAAGGTATGCGGCGCAAGCAAAGCATGCAAATCGAATG
CGTATTGTGAGGCAATATGCTCCCATTGGAATCGTAGTTGCTGTTGTAGT
CTTGCCGGAGAAAAAGCTCATCTGGAGTGTCAAGAGGAAATCAAAACGGT
CTAGAGCTGTTTTTCCACGCCTCCAATGGATTCCACCGAGGAACAATGCT
TGTTTACGGAATGAGGGTCGAAATATATCTATTTGTATCAGGAGGTCCGA
CAATATTCCTCCTTGCGACATGATACGAAACGAAATCGTAGGGGTTTTAG
AGAACACATTCCTCGTGGACAATCACATGCTTAATCGCTTTTCATACATG
TAG
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