Ggra893.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra893.t1
Unique NameGgra893.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length369
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000231_piloncontigtig00000231_pilon:85233..86339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra893Ggra893Gracilaria gracilis GNS1m malegenetig00000231_pilon 85233..86339 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra893.t1.start1Ggra893.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000231_pilon 85233..85235 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra893.t1.CDS1Ggra893.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000231_pilon 85233..86339 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra893.t1.exon1Ggra893.t1.exon1Gracilaria gracilis GNS1m maleexontig00000231_pilon 85233..86339 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra893.t1.stop1Ggra893.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000231_pilon 86337..86339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra893.t1Ggra893.t1Gracilaria gracilis GNS1m malepolypeptidetig00000231_pilon 85233..86339 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra893.t1 ID=Ggra893.t1|Name=Ggra893.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=369bp
MDGEGFRRLCNTASQFLRLCVAHRICEKHDVYRVNIIFECIEEFKIVERF
INFHLANRSFVLVQRKSRHLRKLCDFAQTLRVMADESTSITRVSKFLDMV
IKASRSEKQINRPESRVRLVNGHLFMKLCFQHSLKELEGLMTRYYSKDPG
GQLICQPLLMFISSWARAFVTFISVCSGGQCPQAIAGIEVGSVANLENAV
AKAAKTGFVELTTLHGKRTDTLDHPTVTLTAVSVRILRFQVTVVHPLIMS
EMNGIVSQNCFRTLLVNQSTGKPFNSPAISYQFRKFVTENCKTKLFFSIM
DMRRCCLDIFLTGFRERKVLKSHSEGKFLDSMARYMNTSSDQVKKWVGVH
GSAEHEATGKELTRLLDC*
back to top

spliced messenger RNA

>Ggra893.t1 ID=Ggra893.t1|Name=Ggra893.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00000231_pilon:85233..86339+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGGTGAGGGCTTTCGACGCCTCTGTAACACTGCTTCGCAATTTCT
TAGGCTTTGCGTGGCTCATAGAATTTGCGAAAAGCATGACGTATACAGAG
TGAACATTATCTTTGAGTGTATCGAAGAGTTCAAGATTGTGGAACGTTTT
ATCAACTTCCATCTGGCAAACCGCTCTTTTGTCCTCGTGCAACGAAAATC
ACGGCATCTGAGAAAGTTATGTGATTTTGCCCAGACATTGAGAGTTATGG
CCGACGAATCAACAAGTATCACAAGAGTTTCGAAGTTCCTGGATATGGTC
ATAAAGGCAAGCAGGAGCGAAAAGCAAATTAATCGTCCGGAGTCAAGAGT
GCGGCTTGTGAACGGGCATTTGTTTATGAAACTATGCTTTCAACATTCTT
TGAAGGAGCTTGAAGGTCTTATGACTCGCTACTATTCGAAGGATCCCGGA
GGGCAGTTGATTTGTCAACCATTGTTAATGTTCATTTCCTCTTGGGCAAG
AGCCTTTGTCACTTTCATCTCGGTATGTTCTGGGGGACAGTGCCCTCAGG
CTATAGCGGGAATCGAAGTTGGAAGCGTGGCAAACCTTGAAAACGCAGTT
GCGAAAGCAGCCAAAACTGGATTCGTGGAGCTCACAACGCTTCATGGCAA
AAGAACCGACACCCTTGATCACCCGACTGTGACGCTCACAGCCGTTTCGG
TTAGAATCCTTCGGTTCCAAGTTACTGTCGTACACCCCTTGATAATGTCA
GAAATGAATGGCATAGTTTCACAGAATTGTTTCAGGACTTTATTAGTCAA
CCAAAGCACTGGTAAGCCTTTCAATTCTCCGGCGATTTCATATCAGTTTC
GGAAGTTTGTCACTGAAAATTGCAAGACGAAACTGTTCTTCTCTATTATG
GACATGAGAAGGTGCTGCTTAGATATCTTTCTAACCGGATTTCGTGAAAG
AAAAGTACTTAAATCCCACTCAGAAGGCAAATTTCTTGATTCTATGGCTC
GTTACATGAATACATCTTCAGATCAAGTGAAGAAGTGGGTTGGAGTACAT
GGATCGGCAGAACATGAAGCTACAGGTAAGGAGCTCACAAGACTTTTGGA
CTGCTGA
back to top

protein sequence of Ggra893.t1

>Ggra893.t1 ID=Ggra893.t1|Name=Ggra893.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=369bp
MDGEGFRRLCNTASQFLRLCVAHRICEKHDVYRVNIIFECIEEFKIVERF
INFHLANRSFVLVQRKSRHLRKLCDFAQTLRVMADESTSITRVSKFLDMV
IKASRSEKQINRPESRVRLVNGHLFMKLCFQHSLKELEGLMTRYYSKDPG
GQLICQPLLMFISSWARAFVTFISVCSGGQCPQAIAGIEVGSVANLENAV
AKAAKTGFVELTTLHGKRTDTLDHPTVTLTAVSVRILRFQVTVVHPLIMS
EMNGIVSQNCFRTLLVNQSTGKPFNSPAISYQFRKFVTENCKTKLFFSIM
DMRRCCLDIFLTGFRERKVLKSHSEGKFLDSMARYMNTSSDQVKKWVGVH
GSAEHEATGKELTRLLDC*
back to top

mRNA from alignment at tig00000231_pilon:85233..86339+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra893.t1 ID=Ggra893.t1|Name=Ggra893.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00000231_pilon:85233..86339+ (Gracilaria gracilis GNS1m male)
ATGGATGGTGAGGGCTTTCGACGCCTCTGTAACACTGCTTCGCAATTTCT
TAGGCTTTGCGTGGCTCATAGAATTTGCGAAAAGCATGACGTATACAGAG
TGAACATTATCTTTGAGTGTATCGAAGAGTTCAAGATTGTGGAACGTTTT
ATCAACTTCCATCTGGCAAACCGCTCTTTTGTCCTCGTGCAACGAAAATC
ACGGCATCTGAGAAAGTTATGTGATTTTGCCCAGACATTGAGAGTTATGG
CCGACGAATCAACAAGTATCACAAGAGTTTCGAAGTTCCTGGATATGGTC
ATAAAGGCAAGCAGGAGCGAAAAGCAAATTAATCGTCCGGAGTCAAGAGT
GCGGCTTGTGAACGGGCATTTGTTTATGAAACTATGCTTTCAACATTCTT
TGAAGGAGCTTGAAGGTCTTATGACTCGCTACTATTCGAAGGATCCCGGA
GGGCAGTTGATTTGTCAACCATTGTTAATGTTCATTTCCTCTTGGGCAAG
AGCCTTTGTCACTTTCATCTCGGTATGTTCTGGGGGACAGTGCCCTCAGG
CTATAGCGGGAATCGAAGTTGGAAGCGTGGCAAACCTTGAAAACGCAGTT
GCGAAAGCAGCCAAAACTGGATTCGTGGAGCTCACAACGCTTCATGGCAA
AAGAACCGACACCCTTGATCACCCGACTGTGACGCTCACAGCCGTTTCGG
TTAGAATCCTTCGGTTCCAAGTTACTGTCGTACACCCCTTGATAATGTCA
GAAATGAATGGCATAGTTTCACAGAATTGTTTCAGGACTTTATTAGTCAA
CCAAAGCACTGGTAAGCCTTTCAATTCTCCGGCGATTTCATATCAGTTTC
GGAAGTTTGTCACTGAAAATTGCAAGACGAAACTGTTCTTCTCTATTATG
GACATGAGAAGGTGCTGCTTAGATATCTTTCTAACCGGATTTCGTGAAAG
AAAAGTACTTAAATCCCACTCAGAAGGCAAATTTCTTGATTCTATGGCTC
GTTACATGAATACATCTTCAGATCAAGTGAAGAAGTGGGTTGGAGTACAT
GGATCGGCAGAACATGAAGCTACAGGTAAGGAGCTCACAAGACTTTTGGA
CTGCTGA
back to top

Coding sequence (CDS) from alignment at tig00000231_pilon:85233..86339+

>Ggra893.t1 ID=Ggra893.t1|Name=Ggra893.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1107bp|location=Sequence derived from alignment at tig00000231_pilon:85233..86339+ (Gracilaria gracilis GNS1m male)
ATGGATGGTGAGGGCTTTCGACGCCTCTGTAACACTGCTTCGCAATTTCT
TAGGCTTTGCGTGGCTCATAGAATTTGCGAAAAGCATGACGTATACAGAG
TGAACATTATCTTTGAGTGTATCGAAGAGTTCAAGATTGTGGAACGTTTT
ATCAACTTCCATCTGGCAAACCGCTCTTTTGTCCTCGTGCAACGAAAATC
ACGGCATCTGAGAAAGTTATGTGATTTTGCCCAGACATTGAGAGTTATGG
CCGACGAATCAACAAGTATCACAAGAGTTTCGAAGTTCCTGGATATGGTC
ATAAAGGCAAGCAGGAGCGAAAAGCAAATTAATCGTCCGGAGTCAAGAGT
GCGGCTTGTGAACGGGCATTTGTTTATGAAACTATGCTTTCAACATTCTT
TGAAGGAGCTTGAAGGTCTTATGACTCGCTACTATTCGAAGGATCCCGGA
GGGCAGTTGATTTGTCAACCATTGTTAATGTTCATTTCCTCTTGGGCAAG
AGCCTTTGTCACTTTCATCTCGGTATGTTCTGGGGGACAGTGCCCTCAGG
CTATAGCGGGAATCGAAGTTGGAAGCGTGGCAAACCTTGAAAACGCAGTT
GCGAAAGCAGCCAAAACTGGATTCGTGGAGCTCACAACGCTTCATGGCAA
AAGAACCGACACCCTTGATCACCCGACTGTGACGCTCACAGCCGTTTCGG
TTAGAATCCTTCGGTTCCAAGTTACTGTCGTACACCCCTTGATAATGTCA
GAAATGAATGGCATAGTTTCACAGAATTGTTTCAGGACTTTATTAGTCAA
CCAAAGCACTGGTAAGCCTTTCAATTCTCCGGCGATTTCATATCAGTTTC
GGAAGTTTGTCACTGAAAATTGCAAGACGAAACTGTTCTTCTCTATTATG
GACATGAGAAGGTGCTGCTTAGATATCTTTCTAACCGGATTTCGTGAAAG
AAAAGTACTTAAATCCCACTCAGAAGGCAAATTTCTTGATTCTATGGCTC
GTTACATGAATACATCTTCAGATCAAGTGAAGAAGTGGGTTGGAGTACAT
GGATCGGCAGAACATGAAGCTACAGGTAAGGAGCTCACAAGACTTTTGGA
CTGCTGA
back to top