Ggra8928.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8928.t1
Unique NameGgra8928.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length146
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:839730..840167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702926.1
PFAMsCofilin_ADF
Max annot lvl2759|Eukaryota
KEGG koko:K05765
KEGG Pathwayko04360,ko04666,ko04810,ko05133,map04360,map04666,map04810,map05133
Evalue3.7e-38
EggNOG OGsKOG1735@1|root,KOG1735@2759|Eukaryota
Descriptionactin filament depolymerization
COG categoryO
BRITEko00000,ko00001,ko04131,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8928Ggra8928Gracilaria gracilis GNS1m malegenetig00000860_pilon 839730..840167 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8928.t1.start1Ggra8928.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 839730..839732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8928.t1.CDS1Ggra8928.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 839730..840167 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8928.t1.exon1Ggra8928.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 839730..840167 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8928.t1.stop1Ggra8928.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 840165..840167 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8928.t1Ggra8928.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 839730..840167 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8928.t1 ID=Ggra8928.t1|Name=Ggra8928.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=146bp
MASGVAVDGKVLTTFKGIMSREHRAAIFKINDTMTEVQLEKTVPIAEGAP
QPNWESFIKQLPDTDCRFIAYDFVYEHQGANKNRVLFILWSPEESKIKSK
MIYASSQDGVVNHLEGVQRSLQINDRDDLQYMTISKKLAQHTAGY*
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spliced messenger RNA

>Ggra8928.t1 ID=Ggra8928.t1|Name=Ggra8928.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=438bp|location=Sequence derived from alignment at tig00000860_pilon:839730..840167+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCCGGAGTCGCAGTTGATGGCAAAGTTCTTACCACCTTCAAGGG
AATCATGAGTCGTGAACACCGTGCTGCTATATTCAAGATTAATGACACCA
TGACCGAAGTTCAATTGGAAAAGACCGTTCCCATTGCTGAGGGCGCCCCT
CAGCCTAACTGGGAGTCCTTCATTAAGCAATTGCCCGACACTGACTGTCG
TTTCATTGCGTATGATTTTGTCTATGAGCACCAGGGTGCCAACAAGAACC
GTGTTTTGTTCATTCTATGGTCGCCCGAGGAGTCGAAGATCAAGTCCAAG
ATGATCTACGCTTCGTCCCAAGACGGTGTTGTCAATCATCTTGAAGGTGT
CCAACGCTCCCTTCAAATCAATGACAGAGATGATCTCCAATACATGACTA
TTTCTAAGAAGTTGGCGCAGCACACCGCTGGATACTAG
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protein sequence of Ggra8928.t1

>Ggra8928.t1 ID=Ggra8928.t1|Name=Ggra8928.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=146bp
MASGVAVDGKVLTTFKGIMSREHRAAIFKINDTMTEVQLEKTVPIAEGAP
QPNWESFIKQLPDTDCRFIAYDFVYEHQGANKNRVLFILWSPEESKIKSK
MIYASSQDGVVNHLEGVQRSLQINDRDDLQYMTISKKLAQHTAGY*
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mRNA from alignment at tig00000860_pilon:839730..840167+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8928.t1 ID=Ggra8928.t1|Name=Ggra8928.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=438bp|location=Sequence derived from alignment at tig00000860_pilon:839730..840167+ (Gracilaria gracilis GNS1m male)
ATGGCCTCCGGAGTCGCAGTTGATGGCAAAGTTCTTACCACCTTCAAGGG
AATCATGAGTCGTGAACACCGTGCTGCTATATTCAAGATTAATGACACCA
TGACCGAAGTTCAATTGGAAAAGACCGTTCCCATTGCTGAGGGCGCCCCT
CAGCCTAACTGGGAGTCCTTCATTAAGCAATTGCCCGACACTGACTGTCG
TTTCATTGCGTATGATTTTGTCTATGAGCACCAGGGTGCCAACAAGAACC
GTGTTTTGTTCATTCTATGGTCGCCCGAGGAGTCGAAGATCAAGTCCAAG
ATGATCTACGCTTCGTCCCAAGACGGTGTTGTCAATCATCTTGAAGGTGT
CCAACGCTCCCTTCAAATCAATGACAGAGATGATCTCCAATACATGACTA
TTTCTAAGAAGTTGGCGCAGCACACCGCTGGATACTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:839730..840167+

>Ggra8928.t1 ID=Ggra8928.t1|Name=Ggra8928.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=438bp|location=Sequence derived from alignment at tig00000860_pilon:839730..840167+ (Gracilaria gracilis GNS1m male)
ATGGCCTCCGGAGTCGCAGTTGATGGCAAAGTTCTTACCACCTTCAAGGG
AATCATGAGTCGTGAACACCGTGCTGCTATATTCAAGATTAATGACACCA
TGACCGAAGTTCAATTGGAAAAGACCGTTCCCATTGCTGAGGGCGCCCCT
CAGCCTAACTGGGAGTCCTTCATTAAGCAATTGCCCGACACTGACTGTCG
TTTCATTGCGTATGATTTTGTCTATGAGCACCAGGGTGCCAACAAGAACC
GTGTTTTGTTCATTCTATGGTCGCCCGAGGAGTCGAAGATCAAGTCCAAG
ATGATCTACGCTTCGTCCCAAGACGGTGTTGTCAATCATCTTGAAGGTGT
CCAACGCTCCCTTCAAATCAATGACAGAGATGATCTCCAATACATGACTA
TTTCTAAGAAGTTGGCGCAGCACACCGCTGGATACTAG
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