Ggra8925.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8925.t1
Unique NameGgra8925.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length375
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:831663..832977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709337.1
PFAMsActin
Max annot lvl2759|Eukaryota
KEGG koko:K05692
KEGG Pathwayko04015,ko04145,ko04210,ko04390,ko04391,ko04510,ko04520,ko04530,ko04611,ko04670,ko04714,ko04745,ko04810,ko04919,ko04921,ko05100,ko05110,ko05130,ko05131,ko05132,ko05164,ko05205,ko05225,ko05410,ko05412,ko05414,ko05416,ko05418,map04015,map04145,map04210,map04390,map04391,map04510,map04520,map04530,map04611,map04670,map04714,map04745,map04810,map04919,map04921,map05100,map05110,map05130,map05131,map05132,map05164,map05205,map05225,map05410,map05412,map05414,map05416,map05418
Evalue1.07e-230
EggNOG OGsCOG5277@1|root,KOG0676@2759|Eukaryota
DescriptionATP binding
COG categoryZ
BRITEko00000,ko00001,ko03019,ko03021,ko03029,ko03036,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8925Ggra8925Gracilaria gracilis GNS1m malegenetig00000860_pilon 831663..832977 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8925.t1Ggra8925.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 831663..832977 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8925.t1.start1Ggra8925.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 831663..831665 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8925.t1.CDS1Ggra8925.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 831663..831782 +
Ggra8925.t1.CDS2Ggra8925.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 831882..832646 +
Ggra8925.t1.CDS3Ggra8925.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000860_pilon 832738..832977 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8925.t1.exon1Ggra8925.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 831663..831782 +
Ggra8925.t1.exon2Ggra8925.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 831882..832646 +
Ggra8925.t1.exon3Ggra8925.t1.exon3Gracilaria gracilis GNS1m maleexontig00000860_pilon 832738..832977 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8925.t1.intron1Ggra8925.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 831783..831881 +
Ggra8925.t1.intron2Ggra8925.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000860_pilon 832647..832737 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8925.t1.stop1Ggra8925.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 832975..832977 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8925.t1 ID=Ggra8925.t1|Name=Ggra8925.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=375bp
MQFKPAVVIDNGSGRCKTGLAGEDAPKAVFPAVIGTPKQKGIMVGSGTKD
EYVGDGAMARRGVLIIKYPLEHGIVTNWDDMEKIWHHAFYSELRVDPQEH
PVLLTEAPLNPKGNRERMTQIMFESFSIPAFYVAIQAVLSLYASGRTSGI
VLDSGDGVTHTVPIYEGYSLPHAVLRIDLAGRDLTGWMAKLLQQRGYSFT
TSAEMEIVRDIKQQLCYVAEDYEKELANADSNSSLEKEYELPDGQTITVA
AERFQCPEALFKPELLGNEMSGMHKTAYESIMKTDIDIRKDLYNNIVMSG
GTTMFQGIASRVQKELETLAPPSMKIKVVAPPERQYSVWIGGSILSSLST
FQQMWVSKAEYDEMGPSIVHRKCF*
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spliced messenger RNA

>Ggra8925.t1 ID=Ggra8925.t1|Name=Ggra8925.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1125bp|location=Sequence derived from alignment at tig00000860_pilon:831663..832977+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTTCAAGCCCGCCGTCGTCATTGACAATGGTTCCGGTCGATGCAA
GACTGGTCTCGCTGGTGAAGATGCCCCCAAGGCTGTCTTCCCGGCCGTCA
TCGGTACGCCCAAGCAAAAGGGTATCATGGTTGGATCTGGTACCAAGGAC
GAATACGTCGGTGACGGTGCCATGGCTCGGCGTGGTGTTCTCATCATTAA
ATACCCCCTTGAACATGGTATCGTCACTAACTGGGACGATATGGAGAAGA
TTTGGCATCATGCCTTCTACTCTGAGCTTCGCGTCGACCCGCAGGAGCAT
CCTGTCTTGCTCACAGAAGCCCCTCTCAACCCCAAGGGCAATCGTGAGCG
TATGACTCAGATCATGTTCGAGTCTTTCTCTATTCCCGCCTTCTACGTCG
CTATCCAGGCTGTGCTGTCTCTGTATGCCTCTGGACGTACTTCTGGTATT
GTCCTTGATTCTGGAGATGGTGTCACTCACACCGTCCCCATCTATGAGGG
TTACTCCCTTCCTCACGCTGTCTTGCGTATTGATCTTGCTGGTCGTGACC
TCACAGGCTGGATGGCCAAGCTTTTGCAACAGCGTGGTTACTCTTTCACT
ACCTCAGCCGAAATGGAAATTGTTCGTGATATCAAGCAACAGCTTTGCTA
TGTTGCTGAGGACTACGAAAAGGAATTGGCCAATGCTGACTCCAACTCTT
CGCTCGAGAAGGAATATGAGCTCCCTGATGGACAGACTATTACTGTTGCC
GCTGAGCGTTTCCAGTGCCCTGAAGCTTTGTTTAAGCCCGAACTCCTCGG
AAACGAAATGTCGGGTATGCATAAGACTGCATACGAATCCATTATGAAGA
CAGATATTGATATCCGTAAGGATCTTTACAACAATATTGTCATGTCTGGT
GGAACCACAATGTTCCAAGGCATTGCCTCTCGTGTCCAAAAGGAATTGGA
GACTTTGGCCCCTCCGTCAATGAAGATTAAGGTCGTTGCTCCACCGGAGC
GCCAGTACTCTGTGTGGATTGGTGGTTCCATTCTTTCATCCCTTTCTACT
TTCCAGCAGATGTGGGTGTCCAAGGCTGAATATGACGAAATGGGCCCGTC
GATTGTTCACCGCAAGTGCTTCTAA
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protein sequence of Ggra8925.t1

>Ggra8925.t1 ID=Ggra8925.t1|Name=Ggra8925.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=375bp
MQFKPAVVIDNGSGRCKTGLAGEDAPKAVFPAVIGTPKQKGIMVGSGTKD
EYVGDGAMARRGVLIIKYPLEHGIVTNWDDMEKIWHHAFYSELRVDPQEH
PVLLTEAPLNPKGNRERMTQIMFESFSIPAFYVAIQAVLSLYASGRTSGI
VLDSGDGVTHTVPIYEGYSLPHAVLRIDLAGRDLTGWMAKLLQQRGYSFT
TSAEMEIVRDIKQQLCYVAEDYEKELANADSNSSLEKEYELPDGQTITVA
AERFQCPEALFKPELLGNEMSGMHKTAYESIMKTDIDIRKDLYNNIVMSG
GTTMFQGIASRVQKELETLAPPSMKIKVVAPPERQYSVWIGGSILSSLST
FQQMWVSKAEYDEMGPSIVHRKCF*
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mRNA from alignment at tig00000860_pilon:831663..832977+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8925.t1 ID=Ggra8925.t1|Name=Ggra8925.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1315bp|location=Sequence derived from alignment at tig00000860_pilon:831663..832977+ (Gracilaria gracilis GNS1m male)
ATGCAGTTCAAGCCCGCCGTCGTCATTGACAATGGTTCCGGTCGATGCAA
GACTGGTCTCGCTGGTGAAGATGCCCCCAAGGCTGTCTTCCCGGCCGTCA
TCGGTACGCCCAAGCAAAAGGTAAGTCCCCTGCCATCTGCTATCCAGCCA
ACTGCTACCCAGGCTCGCCAGTCGCATTGCTCACCTTCTAACTCATTCAC
CATTGCTTTCTGAATACAGGGTATCATGGTTGGATCTGGTACCAAGGACG
AATACGTCGGTGACGGTGCCATGGCTCGGCGTGGTGTTCTCATCATTAAA
TACCCCCTTGAACATGGTATCGTCACTAACTGGGACGATATGGAGAAGAT
TTGGCATCATGCCTTCTACTCTGAGCTTCGCGTCGACCCGCAGGAGCATC
CTGTCTTGCTCACAGAAGCCCCTCTCAACCCCAAGGGCAATCGTGAGCGT
ATGACTCAGATCATGTTCGAGTCTTTCTCTATTCCCGCCTTCTACGTCGC
TATCCAGGCTGTGCTGTCTCTGTATGCCTCTGGACGTACTTCTGGTATTG
TCCTTGATTCTGGAGATGGTGTCACTCACACCGTCCCCATCTATGAGGGT
TACTCCCTTCCTCACGCTGTCTTGCGTATTGATCTTGCTGGTCGTGACCT
CACAGGCTGGATGGCCAAGCTTTTGCAACAGCGTGGTTACTCTTTCACTA
CCTCAGCCGAAATGGAAATTGTTCGTGATATCAAGCAACAGCTTTGCTAT
GTTGCTGAGGACTACGAAAAGGAATTGGCCAATGCTGACTCCAACTCTTC
GCTCGAGAAGGAATATGAGCTCCCTGATGGACAGACTATTACTGTTGCCG
CTGAGCGTTTCCAGTGCCCTGAAGCTTTGTTTAAGCCCGAACTCCTCGGA
AACGAAATGTCGGGTATGCATAAGACTGCATACGAATCCATTATGAAGAC
AGATATTGATATCCGTAAGGATCTTTACAACAATGTAAGTTCACCGTCAT
CTTCCATTCTTTTCCGCTTTATTAGAATCAATGTTGTCAGGTTGCTAACA
TATCACGCCTTTCTTTTCACTATAGATTGTCATGTCTGGTGGAACCACAA
TGTTCCAAGGCATTGCCTCTCGTGTCCAAAAGGAATTGGAGACTTTGGCC
CCTCCGTCAATGAAGATTAAGGTCGTTGCTCCACCGGAGCGCCAGTACTC
TGTGTGGATTGGTGGTTCCATTCTTTCATCCCTTTCTACTTTCCAGCAGA
TGTGGGTGTCCAAGGCTGAATATGACGAAATGGGCCCGTCGATTGTTCAC
CGCAAGTGCTTCTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:831663..832977+

>Ggra8925.t1 ID=Ggra8925.t1|Name=Ggra8925.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1125bp|location=Sequence derived from alignment at tig00000860_pilon:831663..832977+ (Gracilaria gracilis GNS1m male)
ATGCAGTTCAAGCCCGCCGTCGTCATTGACAATGGTTCCGGTCGATGCAA
GACTGGTCTCGCTGGTGAAGATGCCCCCAAGGCTGTCTTCCCGGCCGTCA
TCGGTACGCCCAAGCAAAAGGGTATCATGGTTGGATCTGGTACCAAGGAC
GAATACGTCGGTGACGGTGCCATGGCTCGGCGTGGTGTTCTCATCATTAA
ATACCCCCTTGAACATGGTATCGTCACTAACTGGGACGATATGGAGAAGA
TTTGGCATCATGCCTTCTACTCTGAGCTTCGCGTCGACCCGCAGGAGCAT
CCTGTCTTGCTCACAGAAGCCCCTCTCAACCCCAAGGGCAATCGTGAGCG
TATGACTCAGATCATGTTCGAGTCTTTCTCTATTCCCGCCTTCTACGTCG
CTATCCAGGCTGTGCTGTCTCTGTATGCCTCTGGACGTACTTCTGGTATT
GTCCTTGATTCTGGAGATGGTGTCACTCACACCGTCCCCATCTATGAGGG
TTACTCCCTTCCTCACGCTGTCTTGCGTATTGATCTTGCTGGTCGTGACC
TCACAGGCTGGATGGCCAAGCTTTTGCAACAGCGTGGTTACTCTTTCACT
ACCTCAGCCGAAATGGAAATTGTTCGTGATATCAAGCAACAGCTTTGCTA
TGTTGCTGAGGACTACGAAAAGGAATTGGCCAATGCTGACTCCAACTCTT
CGCTCGAGAAGGAATATGAGCTCCCTGATGGACAGACTATTACTGTTGCC
GCTGAGCGTTTCCAGTGCCCTGAAGCTTTGTTTAAGCCCGAACTCCTCGG
AAACGAAATGTCGGGTATGCATAAGACTGCATACGAATCCATTATGAAGA
CAGATATTGATATCCGTAAGGATCTTTACAACAATATTGTCATGTCTGGT
GGAACCACAATGTTCCAAGGCATTGCCTCTCGTGTCCAAAAGGAATTGGA
GACTTTGGCCCCTCCGTCAATGAAGATTAAGGTCGTTGCTCCACCGGAGC
GCCAGTACTCTGTGTGGATTGGTGGTTCCATTCTTTCATCCCTTTCTACT
TTCCAGCAGATGTGGGTGTCCAAGGCTGAATATGACGAAATGGGCCCGTC
GATTGTTCACCGCAAGTGCTTCTAA
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