Ggra8924.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8924.t1
Unique NameGgra8924.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length401
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:829488..830690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703162.1
Preferred nameAMT
PFAMsGCV_T,GCV_T_C
Max annot lvl2759|Eukaryota
KEGG rclassRC00022,RC00069,RC00183,RC00360,RC02834
KEGG koko:K00605,ko:K05359
KEGG ReactionR00691,R01221,R01373,R02300,R04125
KEGG Pathwayko00260,ko00400,ko00630,ko00670,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00400,map00630,map00670,map01100,map01110,map01130,map01200,map01230
KEGG ModuleM00024,M00532
GOsGO:0001505,GO:0003674,GO:0003824,GO:0004047,GO:0005488,GO:0005504,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005829,GO:0005840,GO:0005960,GO:0006082,GO:0006520,GO:0006544,GO:0006546,GO:0006730,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008289,GO:0008483,GO:0009056,GO:0009063,GO:0009069,GO:0009071,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0016020,GO:0016054,GO:0016740,GO:0016741,GO:0016769,GO:0017144,GO:0019464,GO:0019752,GO:0019866,GO:0022626,GO:0031090,GO:0031405,GO:0031406,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031981,GO:0031984,GO:0032259,GO:0032991,GO:0033293,GO:0036094,GO:0042133,GO:0042135,GO:0042221,GO:0042737,GO:0043167,GO:0043168,GO:0043177,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046395,GO:0046686,GO:0048037,GO:0048046,GO:0050662,GO:0050896,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1901681,GO:1902494,GO:1990204,GO:1990904
Evalue3.7e-139
EggNOG OGsCOG0404@1|root,KOG2770@2759|Eukaryota
EC2.1.2.10,4.2.1.51,4.2.1.91
Descriptionaminomethyltransferase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8924Ggra8924Gracilaria gracilis GNS1m malegenetig00000860_pilon 829488..830690 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8924.t1.stop1Ggra8924.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 829488..829490 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8924.t1.CDS1Ggra8924.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 829488..830690 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8924.t1.exon1Ggra8924.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 829488..830690 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8924.t1.start1Ggra8924.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 830688..830690 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8924.t1Ggra8924.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 829488..830690 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8924.t1 ID=Ggra8924.t1|Name=Ggra8924.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=401bp
MMIAARSSLLRALPRRALAVPASAEPALKATVLHDKHVELGGRMVPFAGY
SMPVQYPDGIKESHLFVRSSAGLFDVSHMGQIVLHGADRARFLEKLVVAD
VAAIEPSRAQLSVITTAEGGIIDDTIISNLGDSIGMVINGACKDKDIAHI
REHMQTATASGMDVSLQIIDDHELLALQGPSAMTVMSELVPDFDFVKMPF
MSCAPMNVNGIPCHVTRCGYTGEDGFELSVPADRTIELFETLTGREDVRP
TGLGARDSLRLEAGLCLYGNDIDETTSPVEAGLTWTIGKRRREEGGFVGA
ETILKHLNDGITRRRMAFVMPKGAPARGGETLLNEDGEKVGSVTSGGFSP
SLGMAIGMGYADKPFNKSGTKLQVQVRSRVNDIEVKKMPLVPSNYYRVPE
*
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spliced messenger RNA

>Ggra8924.t1 ID=Ggra8924.t1|Name=Ggra8924.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00000860_pilon:829488..830690- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGATTGCCGCTCGTTCCTCATTGCTGCGTGCCCTGCCGCGGCGCGC
GCTGGCCGTGCCCGCCTCCGCGGAGCCCGCGCTCAAGGCCACCGTGCTGC
ACGACAAGCATGTCGAGCTCGGCGGCAGAATGGTGCCCTTCGCTGGCTAT
TCCATGCCCGTGCAGTACCCCGACGGCATCAAGGAATCGCACCTGTTTGT
GCGCTCGTCGGCTGGCTTGTTCGATGTGTCCCACATGGGGCAGATTGTGC
TGCATGGCGCTGACCGCGCTCGCTTCCTGGAGAAGCTCGTCGTGGCCGAT
GTGGCCGCCATCGAACCCAGCCGCGCTCAGCTGTCTGTCATCACCACCGC
GGAAGGTGGCATTATTGATGACACTATCATCTCTAATCTGGGTGACAGTA
TTGGCATGGTCATTAATGGCGCTTGTAAGGACAAGGACATTGCACATATT
CGCGAGCACATGCAGACTGCCACCGCCAGCGGTATGGACGTCAGTCTGCA
GATCATCGACGATCATGAATTACTGGCCCTGCAAGGCCCGAGCGCCATGA
CCGTCATGTCCGAACTGGTACCGGATTTTGACTTTGTCAAAATGCCTTTC
ATGTCGTGCGCACCCATGAATGTCAACGGCATACCGTGCCACGTCACGCG
CTGCGGTTACACTGGCGAGGATGGATTTGAGCTGTCTGTGCCGGCCGACA
GGACCATTGAATTGTTCGAGACACTCACTGGCCGTGAGGACGTGCGTCCC
ACTGGTTTGGGTGCTCGCGATTCGCTGCGACTTGAAGCCGGATTATGCCT
GTATGGAAATGACATTGACGAGACCACGTCGCCAGTGGAAGCTGGACTGA
CGTGGACAATTGGCAAGCGAAGAAGAGAGGAGGGCGGTTTTGTAGGCGCT
GAGACCATTCTCAAGCATCTGAATGACGGTATCACTCGACGAAGGATGGC
GTTCGTGATGCCCAAGGGCGCTCCGGCGCGTGGCGGAGAGACGCTGCTTA
ATGAGGACGGGGAGAAGGTGGGCTCTGTGACCAGCGGCGGATTTAGCCCG
AGCTTGGGCATGGCTATCGGAATGGGCTATGCCGACAAGCCGTTCAACAA
GAGCGGAACGAAATTGCAAGTTCAGGTTCGATCGCGTGTGAATGACATTG
AGGTGAAGAAAATGCCGCTTGTGCCGAGCAACTATTACAGGGTGCCTGAA
TGA
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protein sequence of Ggra8924.t1

>Ggra8924.t1 ID=Ggra8924.t1|Name=Ggra8924.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=401bp
MMIAARSSLLRALPRRALAVPASAEPALKATVLHDKHVELGGRMVPFAGY
SMPVQYPDGIKESHLFVRSSAGLFDVSHMGQIVLHGADRARFLEKLVVAD
VAAIEPSRAQLSVITTAEGGIIDDTIISNLGDSIGMVINGACKDKDIAHI
REHMQTATASGMDVSLQIIDDHELLALQGPSAMTVMSELVPDFDFVKMPF
MSCAPMNVNGIPCHVTRCGYTGEDGFELSVPADRTIELFETLTGREDVRP
TGLGARDSLRLEAGLCLYGNDIDETTSPVEAGLTWTIGKRRREEGGFVGA
ETILKHLNDGITRRRMAFVMPKGAPARGGETLLNEDGEKVGSVTSGGFSP
SLGMAIGMGYADKPFNKSGTKLQVQVRSRVNDIEVKKMPLVPSNYYRVPE
*
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mRNA from alignment at tig00000860_pilon:829488..830690-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8924.t1 ID=Ggra8924.t1|Name=Ggra8924.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00000860_pilon:829488..830690- (Gracilaria gracilis GNS1m male)
ATGATGATTGCCGCTCGTTCCTCATTGCTGCGTGCCCTGCCGCGGCGCGC
GCTGGCCGTGCCCGCCTCCGCGGAGCCCGCGCTCAAGGCCACCGTGCTGC
ACGACAAGCATGTCGAGCTCGGCGGCAGAATGGTGCCCTTCGCTGGCTAT
TCCATGCCCGTGCAGTACCCCGACGGCATCAAGGAATCGCACCTGTTTGT
GCGCTCGTCGGCTGGCTTGTTCGATGTGTCCCACATGGGGCAGATTGTGC
TGCATGGCGCTGACCGCGCTCGCTTCCTGGAGAAGCTCGTCGTGGCCGAT
GTGGCCGCCATCGAACCCAGCCGCGCTCAGCTGTCTGTCATCACCACCGC
GGAAGGTGGCATTATTGATGACACTATCATCTCTAATCTGGGTGACAGTA
TTGGCATGGTCATTAATGGCGCTTGTAAGGACAAGGACATTGCACATATT
CGCGAGCACATGCAGACTGCCACCGCCAGCGGTATGGACGTCAGTCTGCA
GATCATCGACGATCATGAATTACTGGCCCTGCAAGGCCCGAGCGCCATGA
CCGTCATGTCCGAACTGGTACCGGATTTTGACTTTGTCAAAATGCCTTTC
ATGTCGTGCGCACCCATGAATGTCAACGGCATACCGTGCCACGTCACGCG
CTGCGGTTACACTGGCGAGGATGGATTTGAGCTGTCTGTGCCGGCCGACA
GGACCATTGAATTGTTCGAGACACTCACTGGCCGTGAGGACGTGCGTCCC
ACTGGTTTGGGTGCTCGCGATTCGCTGCGACTTGAAGCCGGATTATGCCT
GTATGGAAATGACATTGACGAGACCACGTCGCCAGTGGAAGCTGGACTGA
CGTGGACAATTGGCAAGCGAAGAAGAGAGGAGGGCGGTTTTGTAGGCGCT
GAGACCATTCTCAAGCATCTGAATGACGGTATCACTCGACGAAGGATGGC
GTTCGTGATGCCCAAGGGCGCTCCGGCGCGTGGCGGAGAGACGCTGCTTA
ATGAGGACGGGGAGAAGGTGGGCTCTGTGACCAGCGGCGGATTTAGCCCG
AGCTTGGGCATGGCTATCGGAATGGGCTATGCCGACAAGCCGTTCAACAA
GAGCGGAACGAAATTGCAAGTTCAGGTTCGATCGCGTGTGAATGACATTG
AGGTGAAGAAAATGCCGCTTGTGCCGAGCAACTATTACAGGGTGCCTGAA
TGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:829488..830690-

>Ggra8924.t1 ID=Ggra8924.t1|Name=Ggra8924.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1203bp|location=Sequence derived from alignment at tig00000860_pilon:829488..830690- (Gracilaria gracilis GNS1m male)
ATGATGATTGCCGCTCGTTCCTCATTGCTGCGTGCCCTGCCGCGGCGCGC
GCTGGCCGTGCCCGCCTCCGCGGAGCCCGCGCTCAAGGCCACCGTGCTGC
ACGACAAGCATGTCGAGCTCGGCGGCAGAATGGTGCCCTTCGCTGGCTAT
TCCATGCCCGTGCAGTACCCCGACGGCATCAAGGAATCGCACCTGTTTGT
GCGCTCGTCGGCTGGCTTGTTCGATGTGTCCCACATGGGGCAGATTGTGC
TGCATGGCGCTGACCGCGCTCGCTTCCTGGAGAAGCTCGTCGTGGCCGAT
GTGGCCGCCATCGAACCCAGCCGCGCTCAGCTGTCTGTCATCACCACCGC
GGAAGGTGGCATTATTGATGACACTATCATCTCTAATCTGGGTGACAGTA
TTGGCATGGTCATTAATGGCGCTTGTAAGGACAAGGACATTGCACATATT
CGCGAGCACATGCAGACTGCCACCGCCAGCGGTATGGACGTCAGTCTGCA
GATCATCGACGATCATGAATTACTGGCCCTGCAAGGCCCGAGCGCCATGA
CCGTCATGTCCGAACTGGTACCGGATTTTGACTTTGTCAAAATGCCTTTC
ATGTCGTGCGCACCCATGAATGTCAACGGCATACCGTGCCACGTCACGCG
CTGCGGTTACACTGGCGAGGATGGATTTGAGCTGTCTGTGCCGGCCGACA
GGACCATTGAATTGTTCGAGACACTCACTGGCCGTGAGGACGTGCGTCCC
ACTGGTTTGGGTGCTCGCGATTCGCTGCGACTTGAAGCCGGATTATGCCT
GTATGGAAATGACATTGACGAGACCACGTCGCCAGTGGAAGCTGGACTGA
CGTGGACAATTGGCAAGCGAAGAAGAGAGGAGGGCGGTTTTGTAGGCGCT
GAGACCATTCTCAAGCATCTGAATGACGGTATCACTCGACGAAGGATGGC
GTTCGTGATGCCCAAGGGCGCTCCGGCGCGTGGCGGAGAGACGCTGCTTA
ATGAGGACGGGGAGAAGGTGGGCTCTGTGACCAGCGGCGGATTTAGCCCG
AGCTTGGGCATGGCTATCGGAATGGGCTATGCCGACAAGCCGTTCAACAA
GAGCGGAACGAAATTGCAAGTTCAGGTTCGATCGCGTGTGAATGACATTG
AGGTGAAGAAAATGCCGCTTGTGCCGAGCAACTATTACAGGGTGCCTGAA
TGA
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