Ggra8923.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8923.t1
Unique NameGgra8923.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length537
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:826906..828516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002508928.1
PFAMsLipase_GDSL_2
Max annot lvl2759|Eukaryota
Evalue3.61e-34
EggNOG OGs2C7IT@1|root,2S8PS@2759|Eukaryota
DescriptionGDSL-like Lipase/Acylhydrolase family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8923Ggra8923Gracilaria gracilis GNS1m malegenetig00000860_pilon 826906..828516 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8923.t1.stop1Ggra8923.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 826906..826908 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8923.t1.CDS1Ggra8923.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 826906..828516 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8923.t1.exon1Ggra8923.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 826906..828516 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8923.t1.start1Ggra8923.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 828514..828516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8923.t1Ggra8923.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 826906..828516 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8923.t1 ID=Ggra8923.t1|Name=Ggra8923.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=537bp
MRPRSRQSHATARRPPRAPPPPPSAESRADPDGTIYEESLHYVRVQRIKH
PLDLRPVPSTSTTELAYPRPPTPPDSIVGSDSSSASSSSSFHSARDSFSP
FPALTSASAPIARGGIAEIDDSTTTTTTTASSRTSSKRSRAKMAASVVSK
PIKKSYVGIVAGLASTVGLSQALFLKATYESPPDAKGPRSGVERPVRLTE
TLSSAEGHVSRIFPTPAAAAGIVEQKISDAVKNAVEGARVKLAEANLKTV
TNLQNGRTFIKRKRILIIGDSLVSGVGGESSFEDGPSDGPALPRQVARYL
SEMLNVDVQWNAVSLTGGDVRMLKRKIIPMLIRERERGTIGDISAVVLVT
GVNDWKRISPIRTASKFRQDLAEFIDSIRQQVGDDCSVFLPAIPGVHHTP
RFHEPLRSIVIFLNDYWDSQKLQLSRTMRKVYFVGQPPNHEWGTNPVQYF
STLDRVHPSELGYKRWAERIAEHMVTAFKKGVQAATSVTHRASVRASAAA
VGAVGQAADVADAATKDISRASAAVAAVAGSTVTPK*
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spliced messenger RNA

>Ggra8923.t1 ID=Ggra8923.t1|Name=Ggra8923.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1611bp|location=Sequence derived from alignment at tig00000860_pilon:826906..828516- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCCGCGCTCCCGGCAGTCGCACGCCACCGCGCGACGTCCCCCCCG
CGCTCCCCCACCGCCGCCCTCGGCAGAGTCGCGCGCAGATCCTGACGGCA
CCATCTACGAGGAGTCGCTCCATTACGTTCGCGTGCAGCGCATCAAGCAC
CCGCTCGACCTCAGACCGGTTCCGTCCACCTCCACCACCGAGCTCGCTTA
TCCCCGACCACCTACTCCGCCCGATTCCATCGTCGGCTCTGACTCCTCCT
CCGCCTCCTCCTCCTCCTCGTTCCACTCCGCGCGCGACAGCTTCAGCCCG
TTTCCGGCTCTCACCTCCGCCTCCGCTCCAATTGCACGCGGCGGCATTGC
GGAGATTGACGACTCTACCACTACCACCACCACCACTGCCTCCTCACGCA
CTTCCAGCAAGCGCTCGCGTGCCAAGATGGCGGCTTCCGTTGTCTCAAAG
CCTATAAAGAAGAGCTATGTCGGCATAGTTGCCGGCCTGGCCAGCACCGT
TGGCCTCAGCCAGGCTCTGTTTCTGAAGGCCACCTACGAATCGCCTCCGG
ATGCCAAAGGACCTCGCTCAGGAGTGGAACGCCCAGTTCGTCTTACCGAA
ACCCTATCGAGCGCCGAAGGGCACGTTTCCCGAATATTTCCCACGCCTGC
CGCTGCTGCTGGCATCGTTGAGCAAAAGATTTCTGACGCTGTCAAGAATG
CAGTCGAAGGTGCTAGAGTCAAGCTTGCTGAAGCCAACTTGAAGACAGTT
ACCAACCTCCAAAACGGCCGCACCTTTATCAAGAGGAAGCGCATCCTAAT
AATCGGTGACTCCCTTGTCAGTGGCGTCGGCGGAGAGTCTAGTTTCGAGG
ATGGGCCCAGTGATGGTCCTGCCCTTCCAAGACAAGTAGCCCGCTACCTC
TCTGAAATGCTCAATGTTGACGTTCAGTGGAATGCCGTGAGCCTAACAGG
AGGTGATGTTCGAATGCTCAAGCGAAAAATTATCCCAATGCTCATTCGTG
AACGGGAGCGCGGCACCATTGGTGATATTTCTGCAGTCGTACTTGTCACT
GGAGTGAACGACTGGAAGCGCATATCTCCCATTCGAACAGCAAGCAAGTT
CCGACAGGACCTTGCTGAGTTTATAGATAGCATCCGCCAGCAGGTTGGAG
ATGACTGCTCCGTGTTTTTACCCGCTATCCCTGGTGTGCACCATACGCCA
AGATTCCACGAACCGCTGCGTTCCATAGTTATTTTCCTCAACGACTACTG
GGATTCGCAAAAGCTGCAGCTGTCTCGCACAATGAGGAAGGTTTATTTTG
TTGGACAGCCTCCAAATCATGAGTGGGGAACCAATCCGGTCCAGTACTTC
TCCACTCTCGATCGTGTTCATCCCTCAGAGCTTGGGTACAAGCGATGGGC
TGAAAGAATTGCGGAGCACATGGTGACAGCTTTTAAGAAGGGTGTCCAAG
CTGCAACCAGTGTAACTCATCGCGCCAGTGTCCGCGCCAGTGCAGCTGCT
GTCGGTGCTGTTGGACAAGCGGCGGACGTAGCCGACGCAGCTACCAAAGA
TATTTCTCGCGCTTCCGCTGCCGTTGCAGCGGTTGCAGGATCCACTGTAA
CACCAAAGTAA
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protein sequence of Ggra8923.t1

>Ggra8923.t1 ID=Ggra8923.t1|Name=Ggra8923.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=537bp
MRPRSRQSHATARRPPRAPPPPPSAESRADPDGTIYEESLHYVRVQRIKH
PLDLRPVPSTSTTELAYPRPPTPPDSIVGSDSSSASSSSSFHSARDSFSP
FPALTSASAPIARGGIAEIDDSTTTTTTTASSRTSSKRSRAKMAASVVSK
PIKKSYVGIVAGLASTVGLSQALFLKATYESPPDAKGPRSGVERPVRLTE
TLSSAEGHVSRIFPTPAAAAGIVEQKISDAVKNAVEGARVKLAEANLKTV
TNLQNGRTFIKRKRILIIGDSLVSGVGGESSFEDGPSDGPALPRQVARYL
SEMLNVDVQWNAVSLTGGDVRMLKRKIIPMLIRERERGTIGDISAVVLVT
GVNDWKRISPIRTASKFRQDLAEFIDSIRQQVGDDCSVFLPAIPGVHHTP
RFHEPLRSIVIFLNDYWDSQKLQLSRTMRKVYFVGQPPNHEWGTNPVQYF
STLDRVHPSELGYKRWAERIAEHMVTAFKKGVQAATSVTHRASVRASAAA
VGAVGQAADVADAATKDISRASAAVAAVAGSTVTPK*
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mRNA from alignment at tig00000860_pilon:826906..828516-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8923.t1 ID=Ggra8923.t1|Name=Ggra8923.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1611bp|location=Sequence derived from alignment at tig00000860_pilon:826906..828516- (Gracilaria gracilis GNS1m male)
ATGCGTCCGCGCTCCCGGCAGTCGCACGCCACCGCGCGACGTCCCCCCCG
CGCTCCCCCACCGCCGCCCTCGGCAGAGTCGCGCGCAGATCCTGACGGCA
CCATCTACGAGGAGTCGCTCCATTACGTTCGCGTGCAGCGCATCAAGCAC
CCGCTCGACCTCAGACCGGTTCCGTCCACCTCCACCACCGAGCTCGCTTA
TCCCCGACCACCTACTCCGCCCGATTCCATCGTCGGCTCTGACTCCTCCT
CCGCCTCCTCCTCCTCCTCGTTCCACTCCGCGCGCGACAGCTTCAGCCCG
TTTCCGGCTCTCACCTCCGCCTCCGCTCCAATTGCACGCGGCGGCATTGC
GGAGATTGACGACTCTACCACTACCACCACCACCACTGCCTCCTCACGCA
CTTCCAGCAAGCGCTCGCGTGCCAAGATGGCGGCTTCCGTTGTCTCAAAG
CCTATAAAGAAGAGCTATGTCGGCATAGTTGCCGGCCTGGCCAGCACCGT
TGGCCTCAGCCAGGCTCTGTTTCTGAAGGCCACCTACGAATCGCCTCCGG
ATGCCAAAGGACCTCGCTCAGGAGTGGAACGCCCAGTTCGTCTTACCGAA
ACCCTATCGAGCGCCGAAGGGCACGTTTCCCGAATATTTCCCACGCCTGC
CGCTGCTGCTGGCATCGTTGAGCAAAAGATTTCTGACGCTGTCAAGAATG
CAGTCGAAGGTGCTAGAGTCAAGCTTGCTGAAGCCAACTTGAAGACAGTT
ACCAACCTCCAAAACGGCCGCACCTTTATCAAGAGGAAGCGCATCCTAAT
AATCGGTGACTCCCTTGTCAGTGGCGTCGGCGGAGAGTCTAGTTTCGAGG
ATGGGCCCAGTGATGGTCCTGCCCTTCCAAGACAAGTAGCCCGCTACCTC
TCTGAAATGCTCAATGTTGACGTTCAGTGGAATGCCGTGAGCCTAACAGG
AGGTGATGTTCGAATGCTCAAGCGAAAAATTATCCCAATGCTCATTCGTG
AACGGGAGCGCGGCACCATTGGTGATATTTCTGCAGTCGTACTTGTCACT
GGAGTGAACGACTGGAAGCGCATATCTCCCATTCGAACAGCAAGCAAGTT
CCGACAGGACCTTGCTGAGTTTATAGATAGCATCCGCCAGCAGGTTGGAG
ATGACTGCTCCGTGTTTTTACCCGCTATCCCTGGTGTGCACCATACGCCA
AGATTCCACGAACCGCTGCGTTCCATAGTTATTTTCCTCAACGACTACTG
GGATTCGCAAAAGCTGCAGCTGTCTCGCACAATGAGGAAGGTTTATTTTG
TTGGACAGCCTCCAAATCATGAGTGGGGAACCAATCCGGTCCAGTACTTC
TCCACTCTCGATCGTGTTCATCCCTCAGAGCTTGGGTACAAGCGATGGGC
TGAAAGAATTGCGGAGCACATGGTGACAGCTTTTAAGAAGGGTGTCCAAG
CTGCAACCAGTGTAACTCATCGCGCCAGTGTCCGCGCCAGTGCAGCTGCT
GTCGGTGCTGTTGGACAAGCGGCGGACGTAGCCGACGCAGCTACCAAAGA
TATTTCTCGCGCTTCCGCTGCCGTTGCAGCGGTTGCAGGATCCACTGTAA
CACCAAAGTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:826906..828516-

>Ggra8923.t1 ID=Ggra8923.t1|Name=Ggra8923.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1611bp|location=Sequence derived from alignment at tig00000860_pilon:826906..828516- (Gracilaria gracilis GNS1m male)
ATGCGTCCGCGCTCCCGGCAGTCGCACGCCACCGCGCGACGTCCCCCCCG
CGCTCCCCCACCGCCGCCCTCGGCAGAGTCGCGCGCAGATCCTGACGGCA
CCATCTACGAGGAGTCGCTCCATTACGTTCGCGTGCAGCGCATCAAGCAC
CCGCTCGACCTCAGACCGGTTCCGTCCACCTCCACCACCGAGCTCGCTTA
TCCCCGACCACCTACTCCGCCCGATTCCATCGTCGGCTCTGACTCCTCCT
CCGCCTCCTCCTCCTCCTCGTTCCACTCCGCGCGCGACAGCTTCAGCCCG
TTTCCGGCTCTCACCTCCGCCTCCGCTCCAATTGCACGCGGCGGCATTGC
GGAGATTGACGACTCTACCACTACCACCACCACCACTGCCTCCTCACGCA
CTTCCAGCAAGCGCTCGCGTGCCAAGATGGCGGCTTCCGTTGTCTCAAAG
CCTATAAAGAAGAGCTATGTCGGCATAGTTGCCGGCCTGGCCAGCACCGT
TGGCCTCAGCCAGGCTCTGTTTCTGAAGGCCACCTACGAATCGCCTCCGG
ATGCCAAAGGACCTCGCTCAGGAGTGGAACGCCCAGTTCGTCTTACCGAA
ACCCTATCGAGCGCCGAAGGGCACGTTTCCCGAATATTTCCCACGCCTGC
CGCTGCTGCTGGCATCGTTGAGCAAAAGATTTCTGACGCTGTCAAGAATG
CAGTCGAAGGTGCTAGAGTCAAGCTTGCTGAAGCCAACTTGAAGACAGTT
ACCAACCTCCAAAACGGCCGCACCTTTATCAAGAGGAAGCGCATCCTAAT
AATCGGTGACTCCCTTGTCAGTGGCGTCGGCGGAGAGTCTAGTTTCGAGG
ATGGGCCCAGTGATGGTCCTGCCCTTCCAAGACAAGTAGCCCGCTACCTC
TCTGAAATGCTCAATGTTGACGTTCAGTGGAATGCCGTGAGCCTAACAGG
AGGTGATGTTCGAATGCTCAAGCGAAAAATTATCCCAATGCTCATTCGTG
AACGGGAGCGCGGCACCATTGGTGATATTTCTGCAGTCGTACTTGTCACT
GGAGTGAACGACTGGAAGCGCATATCTCCCATTCGAACAGCAAGCAAGTT
CCGACAGGACCTTGCTGAGTTTATAGATAGCATCCGCCAGCAGGTTGGAG
ATGACTGCTCCGTGTTTTTACCCGCTATCCCTGGTGTGCACCATACGCCA
AGATTCCACGAACCGCTGCGTTCCATAGTTATTTTCCTCAACGACTACTG
GGATTCGCAAAAGCTGCAGCTGTCTCGCACAATGAGGAAGGTTTATTTTG
TTGGACAGCCTCCAAATCATGAGTGGGGAACCAATCCGGTCCAGTACTTC
TCCACTCTCGATCGTGTTCATCCCTCAGAGCTTGGGTACAAGCGATGGGC
TGAAAGAATTGCGGAGCACATGGTGACAGCTTTTAAGAAGGGTGTCCAAG
CTGCAACCAGTGTAACTCATCGCGCCAGTGTCCGCGCCAGTGCAGCTGCT
GTCGGTGCTGTTGGACAAGCGGCGGACGTAGCCGACGCAGCTACCAAAGA
TATTTCTCGCGCTTCCGCTGCCGTTGCAGCGGTTGCAGGATCCACTGTAA
CACCAAAGTAA
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