Ggra8920.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8920.t1
Unique NameGgra8920.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length217
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:817704..818500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28377.ENSACAP00000005617
Preferred nameRAB2A
PFAMsRas
Max annot lvl33208|Metazoa
KEGG koko:K07877
KEGG Pathwayko04152,map04152
GOsGO:0000139,GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005829,GO:0006464,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006996,GO:0007030,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019538,GO:0023052,GO:0030424,GO:0031090,GO:0031594,GO:0031982,GO:0031984,GO:0032482,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033036,GO:0033267,GO:0034613,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0036477,GO:0042175,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043168,GO:0043170,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043679,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045184,GO:0045202,GO:0046907,GO:0048193,GO:0048471,GO:0050789,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0061175,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0097159,GO:0097367,GO:0097458,GO:0098588,GO:0098791,GO:0098793,GO:0098794,GO:0098827,GO:0098975,GO:0099175,GO:0120025,GO:0120038,GO:0150034,GO:1901265,GO:1901363,GO:1901564
Evalue3.19e-104
EggNOG OGsCOG1100@1|root,KOG0098@2759|Eukaryota,38D6D@33154|Opisthokonta,3BB4T@33208|Metazoa,3CV5J@33213|Bilateria,4818Y@7711|Chordata,48WVN@7742|Vertebrata
DescriptionGDP binding
COG categoryU
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8920Ggra8920Gracilaria gracilis GNS1m malegenetig00000860_pilon 817704..818500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8920.t1Ggra8920.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 817704..818500 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8920.t1.stop1Ggra8920.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 817704..817706 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8920.t1.CDS1Ggra8920.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 817704..818262 -
Ggra8920.t1.CDS2Ggra8920.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 818409..818500 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8920.t1.exon1Ggra8920.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 817704..818262 -
Ggra8920.t1.exon2Ggra8920.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 818409..818500 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8920.t1.intron1Ggra8920.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 818263..818408 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8920.t1.start1Ggra8920.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 818498..818500 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8920.t1 ID=Ggra8920.t1|Name=Ggra8920.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=217bp
MLPPADMSSYAYLFKYIIIGDTGVGKSCLLLQFTDRRFTPIHDLTIGVEF
GARIVTVEDKQLKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRKDT
FDHILSWLQDAKAHSSSDMTIILVGNKADLEHRREVPRESGEAFAKEHGL
LFLETSAKNNTNVEEAFLTTATKIYEKVKAGDLDLSSERHGVKVGASSNA
ISLLDDATTETKSGCC*
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spliced messenger RNA

>Ggra8920.t1 ID=Ggra8920.t1|Name=Ggra8920.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000860_pilon:817704..818500- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACCTCCAGCCGATATGTCTTCGTATGCGTACTTGTTCAAGTACAT
CATCATCGGCGACACGGGAGTCGGTAAGAGCTGTCTGTTATTACAGTTCA
CAGATCGTCGGTTTACGCCAATTCATGACCTGACCATCGGCGTCGAGTTT
GGCGCCAGAATCGTCACCGTTGAGGACAAACAGCTCAAACTTCAAATATG
GGACACAGCCGGTCAGGAGTCCTTCCGGAGCATTACGCGCAGTTATTATC
GTGGCGCTGCTGGCGCCCTCCTTGTGTACGACATCACAAGAAAGGACACT
TTTGATCACATACTCAGTTGGCTACAAGACGCTAAAGCACATTCTAGCTC
TGACATGACTATTATCCTCGTCGGCAACAAGGCCGACTTGGAGCATCGCA
GGGAGGTGCCCAGGGAAAGTGGCGAAGCATTTGCTAAAGAGCACGGACTG
CTCTTCCTCGAAACGAGCGCAAAAAACAATACAAACGTCGAAGAAGCTTT
CCTCACTACCGCTACCAAAATTTACGAAAAGGTCAAGGCAGGCGACTTGG
ACCTGTCCAGTGAGCGACATGGCGTCAAGGTTGGCGCTTCAAGCAATGCG
ATCAGCTTACTGGATGACGCCACGACAGAAACAAAGTCAGGATGTTGCTG
A
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protein sequence of Ggra8920.t1

>Ggra8920.t1 ID=Ggra8920.t1|Name=Ggra8920.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=217bp
MLPPADMSSYAYLFKYIIIGDTGVGKSCLLLQFTDRRFTPIHDLTIGVEF
GARIVTVEDKQLKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRKDT
FDHILSWLQDAKAHSSSDMTIILVGNKADLEHRREVPRESGEAFAKEHGL
LFLETSAKNNTNVEEAFLTTATKIYEKVKAGDLDLSSERHGVKVGASSNA
ISLLDDATTETKSGCC*
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mRNA from alignment at tig00000860_pilon:817704..818500-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8920.t1 ID=Ggra8920.t1|Name=Ggra8920.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=797bp|location=Sequence derived from alignment at tig00000860_pilon:817704..818500- (Gracilaria gracilis GNS1m male)
ATGCTACCTCCAGCCGATATGTCTTCGTATGCGTACTTGTTCAAGTACAT
CATCATCGGCGACACGGGAGTCGGTAAGAGCTGTCTGTTATTGTACGCAA
CCTTCACTTCGTTCACCGTCTGCGCATCTCACCGCATGTTACGTGGCGAG
ACGAGTGCTTTCCAAATACTTTCTCACATCACACCCTAACCGCCATCCCT
TTGTTATGCGACTCTCCCGCGTCTACGTACAAGCGCAGACAGTTCACAGA
TCGTCGGTTTACGCCAATTCATGACCTGACCATCGGCGTCGAGTTTGGCG
CCAGAATCGTCACCGTTGAGGACAAACAGCTCAAACTTCAAATATGGGAC
ACAGCCGGTCAGGAGTCCTTCCGGAGCATTACGCGCAGTTATTATCGTGG
CGCTGCTGGCGCCCTCCTTGTGTACGACATCACAAGAAAGGACACTTTTG
ATCACATACTCAGTTGGCTACAAGACGCTAAAGCACATTCTAGCTCTGAC
ATGACTATTATCCTCGTCGGCAACAAGGCCGACTTGGAGCATCGCAGGGA
GGTGCCCAGGGAAAGTGGCGAAGCATTTGCTAAAGAGCACGGACTGCTCT
TCCTCGAAACGAGCGCAAAAAACAATACAAACGTCGAAGAAGCTTTCCTC
ACTACCGCTACCAAAATTTACGAAAAGGTCAAGGCAGGCGACTTGGACCT
GTCCAGTGAGCGACATGGCGTCAAGGTTGGCGCTTCAAGCAATGCGATCA
GCTTACTGGATGACGCCACGACAGAAACAAAGTCAGGATGTTGCTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:817704..818500-

>Ggra8920.t1 ID=Ggra8920.t1|Name=Ggra8920.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=651bp|location=Sequence derived from alignment at tig00000860_pilon:817704..818500- (Gracilaria gracilis GNS1m male)
ATGCTACCTCCAGCCGATATGTCTTCGTATGCGTACTTGTTCAAGTACAT
CATCATCGGCGACACGGGAGTCGGTAAGAGCTGTCTGTTATTACAGTTCA
CAGATCGTCGGTTTACGCCAATTCATGACCTGACCATCGGCGTCGAGTTT
GGCGCCAGAATCGTCACCGTTGAGGACAAACAGCTCAAACTTCAAATATG
GGACACAGCCGGTCAGGAGTCCTTCCGGAGCATTACGCGCAGTTATTATC
GTGGCGCTGCTGGCGCCCTCCTTGTGTACGACATCACAAGAAAGGACACT
TTTGATCACATACTCAGTTGGCTACAAGACGCTAAAGCACATTCTAGCTC
TGACATGACTATTATCCTCGTCGGCAACAAGGCCGACTTGGAGCATCGCA
GGGAGGTGCCCAGGGAAAGTGGCGAAGCATTTGCTAAAGAGCACGGACTG
CTCTTCCTCGAAACGAGCGCAAAAAACAATACAAACGTCGAAGAAGCTTT
CCTCACTACCGCTACCAAAATTTACGAAAAGGTCAAGGCAGGCGACTTGG
ACCTGTCCAGTGAGCGACATGGCGTCAAGGTTGGCGCTTCAAGCAATGCG
ATCAGCTTACTGGATGACGCCACGACAGAAACAAAGTCAGGATGTTGCTG
A
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