Ggra892.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra892.t1
Unique NameGgra892.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length435
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000231_piloncontigtig00000231_pilon:78681..80395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra892Ggra892Gracilaria gracilis GNS1m malegenetig00000231_pilon 78681..80395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra892.t1Ggra892.t1Gracilaria gracilis GNS1m malepolypeptidetig00000231_pilon 78681..80395 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra892.t1.start1Ggra892.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000231_pilon 78681..78683 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra892.t1.CDS1Ggra892.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000231_pilon 78681..79087 +
Ggra892.t1.CDS2Ggra892.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000231_pilon 79183..79836 +
Ggra892.t1.CDS3Ggra892.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000231_pilon 80152..80395 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra892.t1.exon1Ggra892.t1.exon1Gracilaria gracilis GNS1m maleexontig00000231_pilon 78681..79087 +
Ggra892.t1.exon2Ggra892.t1.exon2Gracilaria gracilis GNS1m maleexontig00000231_pilon 79183..79836 +
Ggra892.t1.exon3Ggra892.t1.exon3Gracilaria gracilis GNS1m maleexontig00000231_pilon 80152..80395 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra892.t1.intron1Ggra892.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000231_pilon 79088..79182 +
Ggra892.t1.intron2Ggra892.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000231_pilon 79837..80151 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra892.t1.stop1Ggra892.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000231_pilon 80393..80395 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra892.t1 ID=Ggra892.t1|Name=Ggra892.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=435bp
MNHNQGPSSKKLKQQISHFRNGLTSTYVVDEEKRSVLLRANIPDVLRWTR
EQIDSEIGRDTGNEKVADARSLAHRILAKHDVQLVVNEVEHWKGERRLWE
NICALSAKLPGQGNGSNIFEAMSRYPSSVLVYRGLNTNSLAKWFECNTLT
RMQELVVHFCAISEYVMRCAYVWKDVKVVLKPANALMHFLRHSIRERPGS
TTRQKVLVFEPSMKVELPPEELTQCLESSLCSAHKAVLEGARVATRKYGM
RDRNGDGRQKIKLWMLWRPLDDAMHALIRELEILVCQLLGEKVDVDEFRL
EAMRKLRWVEAAYIDLGKKWFRSETDFRVPSPLPVGTEPLTRKSDYTYVH
SEKYQALQVLMKIVADSEESAMDRVLLGSMCRASDVICNMHKPACAPGAV
LCSMAAVAAKDEDSCVEHAKRSKRQAKKSISEKK*
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spliced messenger RNA

>Ggra892.t1 ID=Ggra892.t1|Name=Ggra892.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00000231_pilon:78681..80395+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCATAACCAGGGACCTTCGTCGAAGAAGCTTAAACAGCAAATTAG
CCATTTCCGAAATGGGCTTACTAGCACTTATGTTGTCGATGAAGAGAAAC
GTTCTGTACTTCTGCGAGCAAACATTCCAGATGTGTTGCGTTGGACGAGA
GAACAAATAGATTCTGAGATCGGTAGAGACACTGGCAACGAGAAGGTTGC
AGATGCACGCTCACTTGCGCATCGGATTCTGGCAAAGCACGACGTTCAGC
TCGTAGTGAATGAAGTCGAACACTGGAAGGGTGAAAGAAGGCTCTGGGAA
AATATTTGTGCTCTCTCGGCAAAGCTTCCTGGACAAGGCAACGGGAGTAA
CATTTTCGAGGCTATGTCCCGATACCCTTCATCTGTTCTCGTATATCGTG
GGCTAAACACAAACTCGCTTGCGAAGTGGTTTGAATGCAACACACTCACA
CGAATGCAAGAGCTCGTCGTTCACTTTTGCGCGATATCCGAGTATGTCAT
GCGGTGTGCATATGTTTGGAAGGATGTAAAAGTTGTTTTGAAGCCCGCTA
ACGCGCTAATGCATTTCCTTCGTCATAGTATACGAGAACGACCTGGCTCT
ACTACTAGACAGAAAGTTCTGGTGTTCGAACCTTCAATGAAGGTGGAGCT
TCCCCCAGAAGAGCTCACGCAGTGTTTGGAGAGTTCTCTTTGTTCGGCTC
ATAAGGCTGTTCTAGAGGGAGCCCGGGTTGCTACTCGCAAGTACGGAATG
AGAGACCGAAATGGGGATGGTCGGCAGAAGATCAAGCTTTGGATGCTATG
GCGGCCTTTGGACGATGCTATGCATGCCTTGATCCGTGAATTAGAAATTC
TAGTATGCCAATTACTGGGGGAGAAGGTAGACGTGGATGAATTCCGCTTG
GAAGCTATGAGAAAACTTCGATGGGTTGAAGCTGCGTACATAGATCTAGG
GAAGAAGTGGTTCAGGAGTGAGACGGACTTCAGAGTTCCCTCTCCACTTC
CAGTGGGAACTGAACCTCTCACACGCAAATCGGATTACACCTACGTTCAT
AGTGAAAAATATCAGGCTCTACAGGTGCTGATGAAGATCGTGGCCGATTC
CGAAGAAAGCGCCATGGATCGCGTGCTTTTGGGCTCCATGTGCCGGGCAT
CCGATGTCATTTGCAACATGCATAAGCCAGCCTGCGCGCCCGGTGCAGTT
CTGTGTTCCATGGCCGCGGTTGCTGCGAAGGACGAAGATTCATGCGTCGA
ACACGCGAAGCGGAGCAAGAGACAGGCAAAGAAGTCGATATCCGAGAAGA
AATAG
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protein sequence of Ggra892.t1

>Ggra892.t1 ID=Ggra892.t1|Name=Ggra892.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=435bp
MNHNQGPSSKKLKQQISHFRNGLTSTYVVDEEKRSVLLRANIPDVLRWTR
EQIDSEIGRDTGNEKVADARSLAHRILAKHDVQLVVNEVEHWKGERRLWE
NICALSAKLPGQGNGSNIFEAMSRYPSSVLVYRGLNTNSLAKWFECNTLT
RMQELVVHFCAISEYVMRCAYVWKDVKVVLKPANALMHFLRHSIRERPGS
TTRQKVLVFEPSMKVELPPEELTQCLESSLCSAHKAVLEGARVATRKYGM
RDRNGDGRQKIKLWMLWRPLDDAMHALIRELEILVCQLLGEKVDVDEFRL
EAMRKLRWVEAAYIDLGKKWFRSETDFRVPSPLPVGTEPLTRKSDYTYVH
SEKYQALQVLMKIVADSEESAMDRVLLGSMCRASDVICNMHKPACAPGAV
LCSMAAVAAKDEDSCVEHAKRSKRQAKKSISEKK*
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mRNA from alignment at tig00000231_pilon:78681..80395+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra892.t1 ID=Ggra892.t1|Name=Ggra892.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1715bp|location=Sequence derived from alignment at tig00000231_pilon:78681..80395+ (Gracilaria gracilis GNS1m male)
ATGAATCATAACCAGGGACCTTCGTCGAAGAAGCTTAAACAGCAAATTAG
CCATTTCCGAAATGGGCTTACTAGCACTTATGTTGTCGATGAAGAGAAAC
GTTCTGTACTTCTGCGAGCAAACATTCCAGATGTGTTGCGTTGGACGAGA
GAACAAATAGATTCTGAGATCGGTAGAGACACTGGCAACGAGAAGGTTGC
AGATGCACGCTCACTTGCGCATCGGATTCTGGCAAAGCACGACGTTCAGC
TCGTAGTGAATGAAGTCGAACACTGGAAGGGTGAAAGAAGGCTCTGGGAA
AATATTTGTGCTCTCTCGGCAAAGCTTCCTGGACAAGGCAACGGGAGTAA
CATTTTCGAGGCTATGTCCCGATACCCTTCATCTGTTCTCGTATATCGTG
GGCTAAAGTCCCTCTTTGGTCGGAACATGGTGATAGCTGGCAAACGAATA
CCTCGTTTCAATGTAGGGCGAAATGCTATCGCCTATTCAGCCCGCAAGGC
AGCACAAACTCGCTTGCGAAGTGGTTTGAATGCAACACACTCACACGAAT
GCAAGAGCTCGTCGTTCACTTTTGCGCGATATCCGAGTATGTCATGCGGT
GTGCATATGTTTGGAAGGATGTAAAAGTTGTTTTGAAGCCCGCTAACGCG
CTAATGCATTTCCTTCGTCATAGTATACGAGAACGACCTGGCTCTACTAC
TAGACAGAAAGTTCTGGTGTTCGAACCTTCAATGAAGGTGGAGCTTCCCC
CAGAAGAGCTCACGCAGTGTTTGGAGAGTTCTCTTTGTTCGGCTCATAAG
GCTGTTCTAGAGGGAGCCCGGGTTGCTACTCGCAAGTACGGAATGAGAGA
CCGAAATGGGGATGGTCGGCAGAAGATCAAGCTTTGGATGCTATGGCGGC
CTTTGGACGATGCTATGCATGCCTTGATCCGTGAATTAGAAATTCTAGTA
TGCCAATTACTGGGGGAGAAGGTAGACGTGGATGAATTCCGCTTGGAAGC
TATGAGAAAACTTCGATGGGTTGAAGCTGCGTACATAGATCTAGGGAAGA
AGTGGTTCAGGAGTGAGACGGACTTCAGAGTTCCCTCTCCACTTCCAGTG
GGAACTGAACCTCTCACACGCAAATCGGATTACACCTACGTTCATAGTGA
AAAATAGTTAGTATATCTAGTCTGTTGTTGATAATGTAAAGCAGTCTGAA
GCTGCCGCGTGCGCGATAATTCGCATCGCTTGGAGATGAACGCAGAGGGA
AATCGCACGTTATTCACAAAGATGGTTCAGGGTGAGCTGTTAGCAACTGT
ACAAACACAAAACATAGCGGCACTGTTAACGACTGCTAACGACACGATAA
ACTTTCGTTCCCTAAGACGCGGTTGTTCACTCTGTTGTTGCAAATTCCTA
GCTCGTACTCATTCAAAGCTTTACGAGATCCTTCTCATATCAAGGAGCAT
GAGCTCCGAGAAATCCTGAAGTCAGGCTCTACAGGTGCTGATGAAGATCG
TGGCCGATTCCGAAGAAAGCGCCATGGATCGCGTGCTTTTGGGCTCCATG
TGCCGGGCATCCGATGTCATTTGCAACATGCATAAGCCAGCCTGCGCGCC
CGGTGCAGTTCTGTGTTCCATGGCCGCGGTTGCTGCGAAGGACGAAGATT
CATGCGTCGAACACGCGAAGCGGAGCAAGAGACAGGCAAAGAAGTCGATA
TCCGAGAAGAAATAG
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Coding sequence (CDS) from alignment at tig00000231_pilon:78681..80395+

>Ggra892.t1 ID=Ggra892.t1|Name=Ggra892.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1305bp|location=Sequence derived from alignment at tig00000231_pilon:78681..80395+ (Gracilaria gracilis GNS1m male)
ATGAATCATAACCAGGGACCTTCGTCGAAGAAGCTTAAACAGCAAATTAG
CCATTTCCGAAATGGGCTTACTAGCACTTATGTTGTCGATGAAGAGAAAC
GTTCTGTACTTCTGCGAGCAAACATTCCAGATGTGTTGCGTTGGACGAGA
GAACAAATAGATTCTGAGATCGGTAGAGACACTGGCAACGAGAAGGTTGC
AGATGCACGCTCACTTGCGCATCGGATTCTGGCAAAGCACGACGTTCAGC
TCGTAGTGAATGAAGTCGAACACTGGAAGGGTGAAAGAAGGCTCTGGGAA
AATATTTGTGCTCTCTCGGCAAAGCTTCCTGGACAAGGCAACGGGAGTAA
CATTTTCGAGGCTATGTCCCGATACCCTTCATCTGTTCTCGTATATCGTG
GGCTAAACACAAACTCGCTTGCGAAGTGGTTTGAATGCAACACACTCACA
CGAATGCAAGAGCTCGTCGTTCACTTTTGCGCGATATCCGAGTATGTCAT
GCGGTGTGCATATGTTTGGAAGGATGTAAAAGTTGTTTTGAAGCCCGCTA
ACGCGCTAATGCATTTCCTTCGTCATAGTATACGAGAACGACCTGGCTCT
ACTACTAGACAGAAAGTTCTGGTGTTCGAACCTTCAATGAAGGTGGAGCT
TCCCCCAGAAGAGCTCACGCAGTGTTTGGAGAGTTCTCTTTGTTCGGCTC
ATAAGGCTGTTCTAGAGGGAGCCCGGGTTGCTACTCGCAAGTACGGAATG
AGAGACCGAAATGGGGATGGTCGGCAGAAGATCAAGCTTTGGATGCTATG
GCGGCCTTTGGACGATGCTATGCATGCCTTGATCCGTGAATTAGAAATTC
TAGTATGCCAATTACTGGGGGAGAAGGTAGACGTGGATGAATTCCGCTTG
GAAGCTATGAGAAAACTTCGATGGGTTGAAGCTGCGTACATAGATCTAGG
GAAGAAGTGGTTCAGGAGTGAGACGGACTTCAGAGTTCCCTCTCCACTTC
CAGTGGGAACTGAACCTCTCACACGCAAATCGGATTACACCTACGTTCAT
AGTGAAAAATATCAGGCTCTACAGGTGCTGATGAAGATCGTGGCCGATTC
CGAAGAAAGCGCCATGGATCGCGTGCTTTTGGGCTCCATGTGCCGGGCAT
CCGATGTCATTTGCAACATGCATAAGCCAGCCTGCGCGCCCGGTGCAGTT
CTGTGTTCCATGGCCGCGGTTGCTGCGAAGGACGAAGATTCATGCGTCGA
ACACGCGAAGCGGAGCAAGAGACAGGCAAAGAAGTCGATATCCGAGAAGA
AATAG
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