Ggra8919.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8919.t1
Unique Name	Ggra8919.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	339

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:816290..817306 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	29760.VIT_14s0068g00780.t01
PFAMs	Mg_trans_NIPA
Max annot lvl	35493\|Streptophyta
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0012505,GO:0015693,GO:0016020,GO:0030001,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0051179,GO:0051234,GO:0070838,GO:0071944,GO:0072511,GO:0097708
Evalue	2.29e-22
EggNOG OGs	KOG2922@1\|root,KOG2922@2759\|Eukaryota,37P3B@33090\|Viridiplantae,3GFNA@35493\|Streptophyta
Description	Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )
COG category	P

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8919	Ggra8919	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 816290..817306 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8919.t1.start1	Ggra8919.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 816290..816292 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8919.t1.CDS1	Ggra8919.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 816290..817306 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8919.t1.exon1	Ggra8919.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 816290..817306 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8919.t1.stop1	Ggra8919.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 817304..817306 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8919.t1	Ggra8919.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 816290..817306 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:816290..817306+
coding sequence from alignment at tig00000860_pilon:816290..817306+

mRNA sequence

>Ggra8919.t1 ID=Ggra8919.t1|Name=Ggra8919.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=339bp
MQMNVAGVQTLPDLTPMTAPWSIGLVLAMAGYTMCGAGMNLIKLSHIKRG
TTTGSTVLRSTPFNRRSSPAHATLLWFCGYGVNSLGGVLNTAGLRFAAQS
LIAPLSSMALVVNAVFATFVLGERLGLRDVLPMSLIAFGNIIAVASANHS
EQRGLTLLEISQLFRRSSFQLYLITVLVTASLLMVIRGRIRRRIRKSGGE
EMANPTLVAYAGLCHAAAAAMLSVNTVFLSKASLLALTDGLHNAFKPQFL
ALILTWLSLVCFWIYTLNRLLASHDILFIVPAIEVLWSLCSMIGGGIFFD
EYSSMEMSRRVTFAVGVVINLTGVFILSRRGEKGNKLG*

spliced messenger RNA

>Ggra8919.t1 ID=Ggra8919.t1|Name=Ggra8919.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000860_pilon:816290..817306+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGATGAACGTCGCTGGCGTGCAAACTTTGCCCGACCTCACGCCTAT
GACTGCACCATGGTCAATCGGCCTCGTACTTGCAATGGCGGGATACACCA
TGTGCGGAGCGGGTATGAATCTCATCAAACTCTCTCATATCAAACGCGGA
ACCACCACCGGTAGCACTGTGCTTCGCTCAACCCCGTTTAACCGCCGTTC
GTCACCAGCGCACGCCACTCTGTTATGGTTTTGCGGCTACGGTGTCAACT
CGTTGGGCGGAGTGCTCAACACAGCTGGTTTACGTTTTGCCGCCCAGAGT
TTGATTGCCCCTCTTAGCAGCATGGCTCTCGTTGTCAATGCCGTGTTTGC
CACCTTTGTGCTAGGCGAACGGCTTGGTCTTCGCGATGTTCTGCCAATGT
CGCTCATCGCCTTTGGCAACATAATAGCCGTTGCTAGCGCCAATCATTCC
GAACAGCGCGGACTCACACTGCTGGAGATCTCTCAGTTGTTTCGACGCTC
TTCGTTTCAGCTTTATCTCATCACTGTTCTCGTCACGGCTTCATTGCTCA
TGGTTATTAGGGGGAGAATTCGGCGCAGAATACGAAAGTCTGGCGGCGAA
GAAATGGCTAACCCTACCTTGGTTGCGTACGCGGGCTTGTGTCATGCTGC
CGCAGCTGCCATGCTCAGCGTGAACACCGTGTTTTTGTCGAAGGCCAGTC
TGCTAGCGCTGACTGACGGATTGCATAACGCGTTTAAGCCTCAGTTTCTG
GCGCTCATTCTTACTTGGCTCTCGCTCGTTTGCTTTTGGATTTACACCTT
GAATCGCTTGCTGGCGAGTCATGATATTCTCTTCATCGTGCCGGCCATTG
AAGTACTATGGAGTCTGTGCTCGATGATAGGAGGCGGAATTTTCTTTGAC
GAGTACTCTTCTATGGAGATGTCTAGGAGAGTGACCTTCGCGGTTGGTGT
GGTGATCAATCTAACAGGAGTGTTCATCTTGTCGAGAAGAGGAGAGAAGG
GAAACAAGCTGGGATGA

protein sequence of Ggra8919.t1

>Ggra8919.t1 ID=Ggra8919.t1|Name=Ggra8919.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=339bp
MQMNVAGVQTLPDLTPMTAPWSIGLVLAMAGYTMCGAGMNLIKLSHIKRG
TTTGSTVLRSTPFNRRSSPAHATLLWFCGYGVNSLGGVLNTAGLRFAAQS
LIAPLSSMALVVNAVFATFVLGERLGLRDVLPMSLIAFGNIIAVASANHS
EQRGLTLLEISQLFRRSSFQLYLITVLVTASLLMVIRGRIRRRIRKSGGE
EMANPTLVAYAGLCHAAAAAMLSVNTVFLSKASLLALTDGLHNAFKPQFL
ALILTWLSLVCFWIYTLNRLLASHDILFIVPAIEVLWSLCSMIGGGIFFD
EYSSMEMSRRVTFAVGVVINLTGVFILSRRGEKGNKLG*

mRNA from alignment at tig00000860_pilon:816290..817306+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8919.t1 ID=Ggra8919.t1|Name=Ggra8919.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000860_pilon:816290..817306+ (Gracilaria gracilis GNS1m male)
ATGCAGATGAACGTCGCTGGCGTGCAAACTTTGCCCGACCTCACGCCTAT
GACTGCACCATGGTCAATCGGCCTCGTACTTGCAATGGCGGGATACACCA
TGTGCGGAGCGGGTATGAATCTCATCAAACTCTCTCATATCAAACGCGGA
ACCACCACCGGTAGCACTGTGCTTCGCTCAACCCCGTTTAACCGCCGTTC
GTCACCAGCGCACGCCACTCTGTTATGGTTTTGCGGCTACGGTGTCAACT
CGTTGGGCGGAGTGCTCAACACAGCTGGTTTACGTTTTGCCGCCCAGAGT
TTGATTGCCCCTCTTAGCAGCATGGCTCTCGTTGTCAATGCCGTGTTTGC
CACCTTTGTGCTAGGCGAACGGCTTGGTCTTCGCGATGTTCTGCCAATGT
CGCTCATCGCCTTTGGCAACATAATAGCCGTTGCTAGCGCCAATCATTCC
GAACAGCGCGGACTCACACTGCTGGAGATCTCTCAGTTGTTTCGACGCTC
TTCGTTTCAGCTTTATCTCATCACTGTTCTCGTCACGGCTTCATTGCTCA
TGGTTATTAGGGGGAGAATTCGGCGCAGAATACGAAAGTCTGGCGGCGAA
GAAATGGCTAACCCTACCTTGGTTGCGTACGCGGGCTTGTGTCATGCTGC
CGCAGCTGCCATGCTCAGCGTGAACACCGTGTTTTTGTCGAAGGCCAGTC
TGCTAGCGCTGACTGACGGATTGCATAACGCGTTTAAGCCTCAGTTTCTG
GCGCTCATTCTTACTTGGCTCTCGCTCGTTTGCTTTTGGATTTACACCTT
GAATCGCTTGCTGGCGAGTCATGATATTCTCTTCATCGTGCCGGCCATTG
AAGTACTATGGAGTCTGTGCTCGATGATAGGAGGCGGAATTTTCTTTGAC
GAGTACTCTTCTATGGAGATGTCTAGGAGAGTGACCTTCGCGGTTGGTGT
GGTGATCAATCTAACAGGAGTGTTCATCTTGTCGAGAAGAGGAGAGAAGG
GAAACAAGCTGGGATGA

Coding sequence (CDS) from alignment at tig00000860_pilon:816290..817306+

>Ggra8919.t1 ID=Ggra8919.t1|Name=Ggra8919.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1017bp|location=Sequence derived from alignment at tig00000860_pilon:816290..817306+ (Gracilaria gracilis GNS1m male)
ATGCAGATGAACGTCGCTGGCGTGCAAACTTTGCCCGACCTCACGCCTAT
GACTGCACCATGGTCAATCGGCCTCGTACTTGCAATGGCGGGATACACCA
TGTGCGGAGCGGGTATGAATCTCATCAAACTCTCTCATATCAAACGCGGA
ACCACCACCGGTAGCACTGTGCTTCGCTCAACCCCGTTTAACCGCCGTTC
GTCACCAGCGCACGCCACTCTGTTATGGTTTTGCGGCTACGGTGTCAACT
CGTTGGGCGGAGTGCTCAACACAGCTGGTTTACGTTTTGCCGCCCAGAGT
TTGATTGCCCCTCTTAGCAGCATGGCTCTCGTTGTCAATGCCGTGTTTGC
CACCTTTGTGCTAGGCGAACGGCTTGGTCTTCGCGATGTTCTGCCAATGT
CGCTCATCGCCTTTGGCAACATAATAGCCGTTGCTAGCGCCAATCATTCC
GAACAGCGCGGACTCACACTGCTGGAGATCTCTCAGTTGTTTCGACGCTC
TTCGTTTCAGCTTTATCTCATCACTGTTCTCGTCACGGCTTCATTGCTCA
TGGTTATTAGGGGGAGAATTCGGCGCAGAATACGAAAGTCTGGCGGCGAA
GAAATGGCTAACCCTACCTTGGTTGCGTACGCGGGCTTGTGTCATGCTGC
CGCAGCTGCCATGCTCAGCGTGAACACCGTGTTTTTGTCGAAGGCCAGTC
TGCTAGCGCTGACTGACGGATTGCATAACGCGTTTAAGCCTCAGTTTCTG
GCGCTCATTCTTACTTGGCTCTCGCTCGTTTGCTTTTGGATTTACACCTT
GAATCGCTTGCTGGCGAGTCATGATATTCTCTTCATCGTGCCGGCCATTG
AAGTACTATGGAGTCTGTGCTCGATGATAGGAGGCGGAATTTTCTTTGAC
GAGTACTCTTCTATGGAGATGTCTAGGAGAGTGACCTTCGCGGTTGGTGT
GGTGATCAATCTAACAGGAGTGTTCATCTTGTCGAGAAGAGGAGAGAAGG
GAAACAAGCTGGGATGA