Ggra8916.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8916.t1
Unique Name	Ggra8916.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	655

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:795639..797603 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMQ173CT
Preferred name	TLK2
PFAMs	Pkinase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08864
GOs	GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0010468,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019222,GO:0019538,GO:0036211,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0060147,GO:0060255,GO:0060966,GO:0060968,GO:0065007,GO:0071704,GO:0140096,GO:1900368,GO:1901564
Evalue	6.08e-125
EggNOG OGs	KOG1151@1\|root,KOG1151@2759\|Eukaryota
EC	2.7.11.1
Description	protein serine/threonine kinase activity
COG category	H
BRITE	ko00000,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8916	Ggra8916	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 795639..797603 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8916.t1.start1	Ggra8916.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 795639..795641 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8916.t1.CDS1	Ggra8916.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 795639..797603 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8916.t1.exon1	Ggra8916.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 795639..797603 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8916.t1.stop1	Ggra8916.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 797601..797603 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8916.t1	Ggra8916.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 795639..797603 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:795639..797603+
coding sequence from alignment at tig00000860_pilon:795639..797603+

mRNA sequence

>Ggra8916.t1 ID=Ggra8916.t1|Name=Ggra8916.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=655bp
MASPEMSEPTPTNDDQSSRRLRLLEARLSAAPASPPQMRSGTGPSEVPPR
TPPPTDEIEDVRSFSSDSMSRPATPAPVTNNVRRKYAPAPKSKMKKRKRQ
SPAFKSGRLDEFFKPMGDSPPRKKDVPIDPPESPKQDDYAYLRAMIERLK
TDNETLKKAAGDAENLVVQNEDLRTQIEVEMPSLREQLEEREAELLRERE
CAERTKEDLRSVLVSLARHERREAARKASDDGERLGKPVVQRTRTSIHEA
WQDGHQWKQILNDLESIQSEKESLEKRKKELMKRRSQLQKKESAQEGEMP
PPPPVHKTSVPFEETVEYHQEMEDVCRVQMQVLKKQETILLETRQSVLKE
REILVREMRRQSDERDSKFSQFPVLSERYQLLNLLGRGGFSEVFKAYDLR
DGTYVACKIHQLASNWKEEKKRSFIRHAMREYDIHKSLKHPRVVQLIDIF
EIDENTFCTVLEYCEGSDLDSYLRAQKTLPEKEARSITAQVCSGLLYLAE
QERRIIHYDLKPGNILLRKGEVQITDFGLSKIMSEGSSTVDVMELTSQGA
GTMWYLPPECFDTGGNARISVKVDVWSTGVILFQMLYGRKPFGHDQTQEK
MFREKTVQHQELQFPQKPQVSDLAKDFMKRCLTRKASARPDVRQALMHPF
LRKR*

spliced messenger RNA

>Ggra8916.t1 ID=Ggra8916.t1|Name=Ggra8916.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1965bp|location=Sequence derived from alignment at tig00000860_pilon:795639..797603+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAGTCCGGAGATGTCGGAACCCACACCTACAAACGACGATCAATC
CTCTCGTCGACTCCGCCTTCTTGAGGCTCGTCTAAGCGCTGCACCTGCAA
GCCCACCACAGATGCGCAGTGGAACTGGTCCGTCAGAAGTTCCACCTCGG
ACGCCACCACCAACCGATGAGATAGAGGATGTGCGCAGTTTTTCCTCTGA
CTCTATGTCTCGACCAGCCACCCCAGCACCAGTCACGAACAATGTGCGCA
GGAAATATGCCCCGGCTCCGAAATCGAAAATGAAGAAACGCAAGCGACAA
TCTCCGGCCTTCAAATCTGGGAGACTGGACGAGTTCTTCAAGCCAATGGG
CGACTCTCCGCCTAGGAAGAAAGATGTTCCTATCGACCCACCCGAATCTC
CGAAGCAGGATGATTATGCCTATTTGCGCGCGATGATTGAGCGCTTAAAG
ACGGATAATGAAACTCTCAAGAAGGCTGCAGGTGATGCTGAGAACTTAGT
TGTTCAGAATGAGGATTTGCGTACCCAGATTGAGGTCGAGATGCCGTCTC
TACGAGAGCAGTTAGAAGAACGGGAAGCAGAACTTCTACGCGAGCGTGAA
TGTGCTGAACGCACCAAGGAAGATCTACGATCTGTTTTAGTTTCTTTGGC
TAGACACGAACGTCGCGAAGCCGCTCGGAAAGCCTCTGATGATGGTGAGC
GACTAGGAAAACCAGTTGTTCAGCGCACGAGAACTTCGATTCATGAGGCC
TGGCAAGATGGTCATCAGTGGAAACAGATCCTGAATGACCTGGAGTCGAT
ACAGAGCGAAAAGGAAAGCTTAGAGAAGAGAAAGAAGGAACTCATGAAAA
GACGTTCTCAATTGCAGAAGAAAGAGAGTGCTCAGGAGGGAGAAATGCCT
CCACCTCCACCTGTGCATAAGACAAGTGTTCCTTTCGAAGAAACTGTTGA
ATACCATCAAGAGATGGAAGATGTATGCCGAGTGCAGATGCAGGTTCTGA
AGAAGCAAGAGACCATTTTGTTGGAAACAAGGCAAAGCGTATTGAAAGAG
AGAGAAATTCTTGTTCGTGAGATGAGACGACAATCCGATGAACGGGATTC
CAAGTTTTCACAGTTTCCTGTCCTTAGTGAACGATACCAGCTCCTGAATC
TACTTGGGAGAGGTGGGTTTAGCGAAGTTTTTAAGGCCTATGACTTGCGC
GATGGAACATATGTTGCTTGCAAAATCCATCAGCTTGCAAGCAACTGGAA
AGAGGAGAAGAAGCGGAGCTTCATAAGGCATGCAATGCGGGAATATGATA
TCCACAAGTCTCTGAAGCATCCAAGGGTAGTCCAGCTCATTGATATATTT
GAAATCGACGAGAACACTTTTTGCACGGTATTGGAATATTGTGAGGGTAG
TGACCTTGATTCGTATCTGCGTGCACAAAAAACTCTACCAGAGAAAGAAG
CCCGGTCCATTACTGCACAAGTGTGTTCTGGTTTGCTATATCTCGCAGAG
CAAGAACGCCGAATTATTCATTACGATCTCAAACCCGGAAATATCCTGTT
GCGTAAGGGAGAGGTTCAAATCACGGACTTTGGTCTCTCTAAGATTATGA
GTGAAGGCAGTTCTACCGTTGATGTTATGGAGCTGACATCTCAAGGGGCC
GGAACGATGTGGTATCTTCCTCCTGAATGTTTTGATACTGGTGGTAATGC
TAGAATTAGTGTCAAGGTTGACGTCTGGAGTACGGGGGTAATTCTGTTTC
AAATGTTGTACGGAAGGAAGCCGTTCGGTCATGACCAAACTCAAGAAAAG
ATGTTCCGTGAGAAAACTGTTCAGCATCAGGAATTGCAATTCCCGCAAAA
GCCCCAAGTTTCGGATCTAGCAAAGGATTTCATGAAGAGGTGTCTCACAA
GGAAAGCGTCAGCTAGACCCGATGTTCGGCAAGCCCTTATGCACCCATTC
CTGAGGAAGAGATAA

protein sequence of Ggra8916.t1

>Ggra8916.t1 ID=Ggra8916.t1|Name=Ggra8916.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=655bp
MASPEMSEPTPTNDDQSSRRLRLLEARLSAAPASPPQMRSGTGPSEVPPR
TPPPTDEIEDVRSFSSDSMSRPATPAPVTNNVRRKYAPAPKSKMKKRKRQ
SPAFKSGRLDEFFKPMGDSPPRKKDVPIDPPESPKQDDYAYLRAMIERLK
TDNETLKKAAGDAENLVVQNEDLRTQIEVEMPSLREQLEEREAELLRERE
CAERTKEDLRSVLVSLARHERREAARKASDDGERLGKPVVQRTRTSIHEA
WQDGHQWKQILNDLESIQSEKESLEKRKKELMKRRSQLQKKESAQEGEMP
PPPPVHKTSVPFEETVEYHQEMEDVCRVQMQVLKKQETILLETRQSVLKE
REILVREMRRQSDERDSKFSQFPVLSERYQLLNLLGRGGFSEVFKAYDLR
DGTYVACKIHQLASNWKEEKKRSFIRHAMREYDIHKSLKHPRVVQLIDIF
EIDENTFCTVLEYCEGSDLDSYLRAQKTLPEKEARSITAQVCSGLLYLAE
QERRIIHYDLKPGNILLRKGEVQITDFGLSKIMSEGSSTVDVMELTSQGA
GTMWYLPPECFDTGGNARISVKVDVWSTGVILFQMLYGRKPFGHDQTQEK
MFREKTVQHQELQFPQKPQVSDLAKDFMKRCLTRKASARPDVRQALMHPF
LRKR*

mRNA from alignment at tig00000860_pilon:795639..797603+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8916.t1 ID=Ggra8916.t1|Name=Ggra8916.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1965bp|location=Sequence derived from alignment at tig00000860_pilon:795639..797603+ (Gracilaria gracilis GNS1m male)
ATGGCCAGTCCGGAGATGTCGGAACCCACACCTACAAACGACGATCAATC
CTCTCGTCGACTCCGCCTTCTTGAGGCTCGTCTAAGCGCTGCACCTGCAA
GCCCACCACAGATGCGCAGTGGAACTGGTCCGTCAGAAGTTCCACCTCGG
ACGCCACCACCAACCGATGAGATAGAGGATGTGCGCAGTTTTTCCTCTGA
CTCTATGTCTCGACCAGCCACCCCAGCACCAGTCACGAACAATGTGCGCA
GGAAATATGCCCCGGCTCCGAAATCGAAAATGAAGAAACGCAAGCGACAA
TCTCCGGCCTTCAAATCTGGGAGACTGGACGAGTTCTTCAAGCCAATGGG
CGACTCTCCGCCTAGGAAGAAAGATGTTCCTATCGACCCACCCGAATCTC
CGAAGCAGGATGATTATGCCTATTTGCGCGCGATGATTGAGCGCTTAAAG
ACGGATAATGAAACTCTCAAGAAGGCTGCAGGTGATGCTGAGAACTTAGT
TGTTCAGAATGAGGATTTGCGTACCCAGATTGAGGTCGAGATGCCGTCTC
TACGAGAGCAGTTAGAAGAACGGGAAGCAGAACTTCTACGCGAGCGTGAA
TGTGCTGAACGCACCAAGGAAGATCTACGATCTGTTTTAGTTTCTTTGGC
TAGACACGAACGTCGCGAAGCCGCTCGGAAAGCCTCTGATGATGGTGAGC
GACTAGGAAAACCAGTTGTTCAGCGCACGAGAACTTCGATTCATGAGGCC
TGGCAAGATGGTCATCAGTGGAAACAGATCCTGAATGACCTGGAGTCGAT
ACAGAGCGAAAAGGAAAGCTTAGAGAAGAGAAAGAAGGAACTCATGAAAA
GACGTTCTCAATTGCAGAAGAAAGAGAGTGCTCAGGAGGGAGAAATGCCT
CCACCTCCACCTGTGCATAAGACAAGTGTTCCTTTCGAAGAAACTGTTGA
ATACCATCAAGAGATGGAAGATGTATGCCGAGTGCAGATGCAGGTTCTGA
AGAAGCAAGAGACCATTTTGTTGGAAACAAGGCAAAGCGTATTGAAAGAG
AGAGAAATTCTTGTTCGTGAGATGAGACGACAATCCGATGAACGGGATTC
CAAGTTTTCACAGTTTCCTGTCCTTAGTGAACGATACCAGCTCCTGAATC
TACTTGGGAGAGGTGGGTTTAGCGAAGTTTTTAAGGCCTATGACTTGCGC
GATGGAACATATGTTGCTTGCAAAATCCATCAGCTTGCAAGCAACTGGAA
AGAGGAGAAGAAGCGGAGCTTCATAAGGCATGCAATGCGGGAATATGATA
TCCACAAGTCTCTGAAGCATCCAAGGGTAGTCCAGCTCATTGATATATTT
GAAATCGACGAGAACACTTTTTGCACGGTATTGGAATATTGTGAGGGTAG
TGACCTTGATTCGTATCTGCGTGCACAAAAAACTCTACCAGAGAAAGAAG
CCCGGTCCATTACTGCACAAGTGTGTTCTGGTTTGCTATATCTCGCAGAG
CAAGAACGCCGAATTATTCATTACGATCTCAAACCCGGAAATATCCTGTT
GCGTAAGGGAGAGGTTCAAATCACGGACTTTGGTCTCTCTAAGATTATGA
GTGAAGGCAGTTCTACCGTTGATGTTATGGAGCTGACATCTCAAGGGGCC
GGAACGATGTGGTATCTTCCTCCTGAATGTTTTGATACTGGTGGTAATGC
TAGAATTAGTGTCAAGGTTGACGTCTGGAGTACGGGGGTAATTCTGTTTC
AAATGTTGTACGGAAGGAAGCCGTTCGGTCATGACCAAACTCAAGAAAAG
ATGTTCCGTGAGAAAACTGTTCAGCATCAGGAATTGCAATTCCCGCAAAA
GCCCCAAGTTTCGGATCTAGCAAAGGATTTCATGAAGAGGTGTCTCACAA
GGAAAGCGTCAGCTAGACCCGATGTTCGGCAAGCCCTTATGCACCCATTC
CTGAGGAAGAGATAA

Coding sequence (CDS) from alignment at tig00000860_pilon:795639..797603+

>Ggra8916.t1 ID=Ggra8916.t1|Name=Ggra8916.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1965bp|location=Sequence derived from alignment at tig00000860_pilon:795639..797603+ (Gracilaria gracilis GNS1m male)
ATGGCCAGTCCGGAGATGTCGGAACCCACACCTACAAACGACGATCAATC
CTCTCGTCGACTCCGCCTTCTTGAGGCTCGTCTAAGCGCTGCACCTGCAA
GCCCACCACAGATGCGCAGTGGAACTGGTCCGTCAGAAGTTCCACCTCGG
ACGCCACCACCAACCGATGAGATAGAGGATGTGCGCAGTTTTTCCTCTGA
CTCTATGTCTCGACCAGCCACCCCAGCACCAGTCACGAACAATGTGCGCA
GGAAATATGCCCCGGCTCCGAAATCGAAAATGAAGAAACGCAAGCGACAA
TCTCCGGCCTTCAAATCTGGGAGACTGGACGAGTTCTTCAAGCCAATGGG
CGACTCTCCGCCTAGGAAGAAAGATGTTCCTATCGACCCACCCGAATCTC
CGAAGCAGGATGATTATGCCTATTTGCGCGCGATGATTGAGCGCTTAAAG
ACGGATAATGAAACTCTCAAGAAGGCTGCAGGTGATGCTGAGAACTTAGT
TGTTCAGAATGAGGATTTGCGTACCCAGATTGAGGTCGAGATGCCGTCTC
TACGAGAGCAGTTAGAAGAACGGGAAGCAGAACTTCTACGCGAGCGTGAA
TGTGCTGAACGCACCAAGGAAGATCTACGATCTGTTTTAGTTTCTTTGGC
TAGACACGAACGTCGCGAAGCCGCTCGGAAAGCCTCTGATGATGGTGAGC
GACTAGGAAAACCAGTTGTTCAGCGCACGAGAACTTCGATTCATGAGGCC
TGGCAAGATGGTCATCAGTGGAAACAGATCCTGAATGACCTGGAGTCGAT
ACAGAGCGAAAAGGAAAGCTTAGAGAAGAGAAAGAAGGAACTCATGAAAA
GACGTTCTCAATTGCAGAAGAAAGAGAGTGCTCAGGAGGGAGAAATGCCT
CCACCTCCACCTGTGCATAAGACAAGTGTTCCTTTCGAAGAAACTGTTGA
ATACCATCAAGAGATGGAAGATGTATGCCGAGTGCAGATGCAGGTTCTGA
AGAAGCAAGAGACCATTTTGTTGGAAACAAGGCAAAGCGTATTGAAAGAG
AGAGAAATTCTTGTTCGTGAGATGAGACGACAATCCGATGAACGGGATTC
CAAGTTTTCACAGTTTCCTGTCCTTAGTGAACGATACCAGCTCCTGAATC
TACTTGGGAGAGGTGGGTTTAGCGAAGTTTTTAAGGCCTATGACTTGCGC
GATGGAACATATGTTGCTTGCAAAATCCATCAGCTTGCAAGCAACTGGAA
AGAGGAGAAGAAGCGGAGCTTCATAAGGCATGCAATGCGGGAATATGATA
TCCACAAGTCTCTGAAGCATCCAAGGGTAGTCCAGCTCATTGATATATTT
GAAATCGACGAGAACACTTTTTGCACGGTATTGGAATATTGTGAGGGTAG
TGACCTTGATTCGTATCTGCGTGCACAAAAAACTCTACCAGAGAAAGAAG
CCCGGTCCATTACTGCACAAGTGTGTTCTGGTTTGCTATATCTCGCAGAG
CAAGAACGCCGAATTATTCATTACGATCTCAAACCCGGAAATATCCTGTT
GCGTAAGGGAGAGGTTCAAATCACGGACTTTGGTCTCTCTAAGATTATGA
GTGAAGGCAGTTCTACCGTTGATGTTATGGAGCTGACATCTCAAGGGGCC
GGAACGATGTGGTATCTTCCTCCTGAATGTTTTGATACTGGTGGTAATGC
TAGAATTAGTGTCAAGGTTGACGTCTGGAGTACGGGGGTAATTCTGTTTC
AAATGTTGTACGGAAGGAAGCCGTTCGGTCATGACCAAACTCAAGAAAAG
ATGTTCCGTGAGAAAACTGTTCAGCATCAGGAATTGCAATTCCCGCAAAA
GCCCCAAGTTTCGGATCTAGCAAAGGATTTCATGAAGAGGTGTCTCACAA
GGAAAGCGTCAGCTAGACCCGATGTTCGGCAAGCCCTTATGCACCCATTC
CTGAGGAAGAGATAA