Ggra8915.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8915.t1
Unique NameGgra8915.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length455
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:793228..794592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G6E1
Preferred nameCCDC25
PFAMsDUF814,GPS,Lectin_C,PKD_channel,PLAT
Max annot lvl2759|Eukaryota
KEGG koko:K04989
KEGG TC1.A.5.1.2
KEGG Pathwayko04742,map04742
GOsGO:0001581,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005261,GO:0005262,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0007600,GO:0007606,GO:0008150,GO:0008324,GO:0009268,GO:0009581,GO:0009582,GO:0009593,GO:0009605,GO:0009612,GO:0009628,GO:0009987,GO:0010447,GO:0015075,GO:0015085,GO:0015267,GO:0015318,GO:0016020,GO:0016021,GO:0022803,GO:0022838,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0032501,GO:0032991,GO:0034220,GO:0034702,GO:0034703,GO:0042221,GO:0043235,GO:0044424,GO:0044425,GO:0044464,GO:0046873,GO:0050877,GO:0050896,GO:0050906,GO:0050907,GO:0050909,GO:0050912,GO:0050915,GO:0050982,GO:0051179,GO:0051234,GO:0051606,GO:0051716,GO:0055085,GO:0070588,GO:0070838,GO:0071214,GO:0071467,GO:0071468,GO:0071944,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0104004,GO:1902495,GO:1990351
Evalue0.000307
EggNOG OGsKOG3272@1|root,KOG3272@2759|Eukaryota
DescriptionDomain of unknown function (DUF814)
COG categoryS
BRITEko00000,ko00001,ko04040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8915Ggra8915Gracilaria gracilis GNS1m malegenetig00000860_pilon 793228..794592 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8915.t1.start1Ggra8915.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 793228..793230 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8915.t1.CDS1Ggra8915.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 793228..794592 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8915.t1.exon1Ggra8915.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 793228..794592 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8915.t1.stop1Ggra8915.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 794590..794592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8915.t1Ggra8915.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 793228..794592 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8915.t1 ID=Ggra8915.t1|Name=Ggra8915.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=455bp
MRSVLSSQGFLIYIGDTDDENASLCRHAYPDDLWIHLSERASPHALVSIG
DLKLLPGQEDRYRRTPDGRKMLDLGPTIYEAALLVKFLSDSREDEETNAV
FTRADSLFLNEVNRGSRGSVFDILSGITSHNDDDLDEIPGRVFLIRMPHF
YRIEHDEHKSLQLLARSERSGSLGNMDREYTAWKEIMLRRETTNRRDWYM
RRSYGEQIFHDDSDDESEAENGDIADLHNMEQNGDDDEHDDAHDDAHEDI
DDMSVEQKDVSISDSEEPHNCDDNEKRTCDTKPEKKNDMKAEPTEEVDVL
KVKEIKTYQTRQPEDCKTDDSKNVSMPTTEKEEASTEPCVGRVERDDDNT
EVQKVNVNCSDVNYLEPSKEGNLGVVTDELADDKNLDQDKNVSKKPPSLN
VVPEKRPNQDQNEKSRNVVRAIERKTNEDQTENAKSTCEVLEKKILDGTE
NKPS*
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spliced messenger RNA

>Ggra8915.t1 ID=Ggra8915.t1|Name=Ggra8915.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00000860_pilon:793228..794592+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAAGTGTTCTATCATCCCAGGGGTTTCTAATCTACATCGGCGACAC
TGATGACGAGAATGCTTCCCTGTGCCGCCACGCGTACCCTGATGACTTAT
GGATACATTTGAGCGAACGTGCGTCTCCGCACGCCCTTGTATCAATTGGC
GACCTCAAGCTTCTCCCGGGCCAGGAAGATCGCTATCGACGAACTCCGGA
TGGAAGGAAGATGCTGGATCTGGGACCAACCATTTATGAGGCAGCCTTGC
TCGTCAAGTTCCTGTCAGACTCCCGCGAAGACGAAGAGACAAATGCTGTC
TTTACTCGAGCTGATTCTTTATTTCTAAATGAAGTGAATAGAGGCTCCAG
AGGTTCGGTGTTTGATATTCTGTCTGGTATCACAAGCCATAATGATGATG
ACCTGGATGAAATACCAGGCAGAGTGTTTCTTATCAGAATGCCACACTTC
TACCGTATCGAACACGATGAACACAAGTCCTTACAGCTGCTCGCAAGGTC
AGAAAGATCCGGTTCTCTTGGAAACATGGATCGAGAGTATACAGCATGGA
AAGAGATAATGCTTCGTAGAGAAACTACTAACAGACGCGACTGGTACATG
AGACGGTCTTACGGGGAACAAATCTTTCACGATGATTCTGATGATGAAAG
CGAGGCGGAAAACGGGGACATTGCAGACCTACACAATATGGAACAAAATG
GTGACGATGACGAGCATGATGACGCTCACGACGATGCACACGAGGACATT
GATGACATGAGCGTGGAACAGAAGGATGTGAGTATTTCTGATTCTGAGGA
ACCTCATAATTGCGACGACAATGAAAAGAGGACCTGCGACACAAAACCTG
AAAAGAAGAATGACATGAAAGCCGAACCAACAGAAGAGGTTGATGTCCTG
AAAGTGAAAGAAATTAAGACGTACCAAACTCGACAACCTGAAGACTGCAA
GACCGACGACTCAAAGAACGTGTCCATGCCTACCACCGAAAAGGAAGAAG
CGAGCACAGAACCATGTGTTGGTCGAGTAGAGCGTGATGACGACAACACC
GAAGTGCAGAAAGTCAATGTCAATTGCAGCGATGTTAACTATTTAGAGCC
ATCTAAGGAGGGCAATCTAGGCGTGGTTACGGATGAGTTGGCTGATGACA
AGAACCTGGATCAGGACAAGAACGTTAGTAAGAAACCGCCGAGCCTAAAT
GTCGTACCGGAAAAGAGGCCCAATCAAGATCAGAATGAAAAGAGCAGAAA
CGTAGTCAGAGCGATAGAGAGGAAAACTAATGAGGATCAAACTGAGAATG
CTAAAAGCACTTGTGAAGTTTTGGAGAAAAAGATCCTGGATGGAACGGAG
AACAAACCTTCGTAA
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protein sequence of Ggra8915.t1

>Ggra8915.t1 ID=Ggra8915.t1|Name=Ggra8915.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=455bp
MRSVLSSQGFLIYIGDTDDENASLCRHAYPDDLWIHLSERASPHALVSIG
DLKLLPGQEDRYRRTPDGRKMLDLGPTIYEAALLVKFLSDSREDEETNAV
FTRADSLFLNEVNRGSRGSVFDILSGITSHNDDDLDEIPGRVFLIRMPHF
YRIEHDEHKSLQLLARSERSGSLGNMDREYTAWKEIMLRRETTNRRDWYM
RRSYGEQIFHDDSDDESEAENGDIADLHNMEQNGDDDEHDDAHDDAHEDI
DDMSVEQKDVSISDSEEPHNCDDNEKRTCDTKPEKKNDMKAEPTEEVDVL
KVKEIKTYQTRQPEDCKTDDSKNVSMPTTEKEEASTEPCVGRVERDDDNT
EVQKVNVNCSDVNYLEPSKEGNLGVVTDELADDKNLDQDKNVSKKPPSLN
VVPEKRPNQDQNEKSRNVVRAIERKTNEDQTENAKSTCEVLEKKILDGTE
NKPS*
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mRNA from alignment at tig00000860_pilon:793228..794592+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8915.t1 ID=Ggra8915.t1|Name=Ggra8915.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00000860_pilon:793228..794592+ (Gracilaria gracilis GNS1m male)
ATGCGAAGTGTTCTATCATCCCAGGGGTTTCTAATCTACATCGGCGACAC
TGATGACGAGAATGCTTCCCTGTGCCGCCACGCGTACCCTGATGACTTAT
GGATACATTTGAGCGAACGTGCGTCTCCGCACGCCCTTGTATCAATTGGC
GACCTCAAGCTTCTCCCGGGCCAGGAAGATCGCTATCGACGAACTCCGGA
TGGAAGGAAGATGCTGGATCTGGGACCAACCATTTATGAGGCAGCCTTGC
TCGTCAAGTTCCTGTCAGACTCCCGCGAAGACGAAGAGACAAATGCTGTC
TTTACTCGAGCTGATTCTTTATTTCTAAATGAAGTGAATAGAGGCTCCAG
AGGTTCGGTGTTTGATATTCTGTCTGGTATCACAAGCCATAATGATGATG
ACCTGGATGAAATACCAGGCAGAGTGTTTCTTATCAGAATGCCACACTTC
TACCGTATCGAACACGATGAACACAAGTCCTTACAGCTGCTCGCAAGGTC
AGAAAGATCCGGTTCTCTTGGAAACATGGATCGAGAGTATACAGCATGGA
AAGAGATAATGCTTCGTAGAGAAACTACTAACAGACGCGACTGGTACATG
AGACGGTCTTACGGGGAACAAATCTTTCACGATGATTCTGATGATGAAAG
CGAGGCGGAAAACGGGGACATTGCAGACCTACACAATATGGAACAAAATG
GTGACGATGACGAGCATGATGACGCTCACGACGATGCACACGAGGACATT
GATGACATGAGCGTGGAACAGAAGGATGTGAGTATTTCTGATTCTGAGGA
ACCTCATAATTGCGACGACAATGAAAAGAGGACCTGCGACACAAAACCTG
AAAAGAAGAATGACATGAAAGCCGAACCAACAGAAGAGGTTGATGTCCTG
AAAGTGAAAGAAATTAAGACGTACCAAACTCGACAACCTGAAGACTGCAA
GACCGACGACTCAAAGAACGTGTCCATGCCTACCACCGAAAAGGAAGAAG
CGAGCACAGAACCATGTGTTGGTCGAGTAGAGCGTGATGACGACAACACC
GAAGTGCAGAAAGTCAATGTCAATTGCAGCGATGTTAACTATTTAGAGCC
ATCTAAGGAGGGCAATCTAGGCGTGGTTACGGATGAGTTGGCTGATGACA
AGAACCTGGATCAGGACAAGAACGTTAGTAAGAAACCGCCGAGCCTAAAT
GTCGTACCGGAAAAGAGGCCCAATCAAGATCAGAATGAAAAGAGCAGAAA
CGTAGTCAGAGCGATAGAGAGGAAAACTAATGAGGATCAAACTGAGAATG
CTAAAAGCACTTGTGAAGTTTTGGAGAAAAAGATCCTGGATGGAACGGAG
AACAAACCTTCGTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:793228..794592+

>Ggra8915.t1 ID=Ggra8915.t1|Name=Ggra8915.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1365bp|location=Sequence derived from alignment at tig00000860_pilon:793228..794592+ (Gracilaria gracilis GNS1m male)
ATGCGAAGTGTTCTATCATCCCAGGGGTTTCTAATCTACATCGGCGACAC
TGATGACGAGAATGCTTCCCTGTGCCGCCACGCGTACCCTGATGACTTAT
GGATACATTTGAGCGAACGTGCGTCTCCGCACGCCCTTGTATCAATTGGC
GACCTCAAGCTTCTCCCGGGCCAGGAAGATCGCTATCGACGAACTCCGGA
TGGAAGGAAGATGCTGGATCTGGGACCAACCATTTATGAGGCAGCCTTGC
TCGTCAAGTTCCTGTCAGACTCCCGCGAAGACGAAGAGACAAATGCTGTC
TTTACTCGAGCTGATTCTTTATTTCTAAATGAAGTGAATAGAGGCTCCAG
AGGTTCGGTGTTTGATATTCTGTCTGGTATCACAAGCCATAATGATGATG
ACCTGGATGAAATACCAGGCAGAGTGTTTCTTATCAGAATGCCACACTTC
TACCGTATCGAACACGATGAACACAAGTCCTTACAGCTGCTCGCAAGGTC
AGAAAGATCCGGTTCTCTTGGAAACATGGATCGAGAGTATACAGCATGGA
AAGAGATAATGCTTCGTAGAGAAACTACTAACAGACGCGACTGGTACATG
AGACGGTCTTACGGGGAACAAATCTTTCACGATGATTCTGATGATGAAAG
CGAGGCGGAAAACGGGGACATTGCAGACCTACACAATATGGAACAAAATG
GTGACGATGACGAGCATGATGACGCTCACGACGATGCACACGAGGACATT
GATGACATGAGCGTGGAACAGAAGGATGTGAGTATTTCTGATTCTGAGGA
ACCTCATAATTGCGACGACAATGAAAAGAGGACCTGCGACACAAAACCTG
AAAAGAAGAATGACATGAAAGCCGAACCAACAGAAGAGGTTGATGTCCTG
AAAGTGAAAGAAATTAAGACGTACCAAACTCGACAACCTGAAGACTGCAA
GACCGACGACTCAAAGAACGTGTCCATGCCTACCACCGAAAAGGAAGAAG
CGAGCACAGAACCATGTGTTGGTCGAGTAGAGCGTGATGACGACAACACC
GAAGTGCAGAAAGTCAATGTCAATTGCAGCGATGTTAACTATTTAGAGCC
ATCTAAGGAGGGCAATCTAGGCGTGGTTACGGATGAGTTGGCTGATGACA
AGAACCTGGATCAGGACAAGAACGTTAGTAAGAAACCGCCGAGCCTAAAT
GTCGTACCGGAAAAGAGGCCCAATCAAGATCAGAATGAAAAGAGCAGAAA
CGTAGTCAGAGCGATAGAGAGGAAAACTAATGAGGATCAAACTGAGAATG
CTAAAAGCACTTGTGAAGTTTTGGAGAAAAAGATCCTGGATGGAACGGAG
AACAAACCTTCGTAA
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