Ggra8913.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8913.t1
Unique Name	Ggra8913.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	442

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:790264..791589 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8913	Ggra8913	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 790264..791589 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8913.t1.start1	Ggra8913.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 790264..790266 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8913.t1.CDS1	Ggra8913.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 790264..791589 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8913.t1.exon1	Ggra8913.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 790264..791589 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8913.t1.stop1	Ggra8913.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 791587..791589 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8913.t1	Ggra8913.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 790264..791589 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:790264..791589+
coding sequence from alignment at tig00000860_pilon:790264..791589+

mRNA sequence

>Ggra8913.t1 ID=Ggra8913.t1|Name=Ggra8913.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=442bp
MDMRRGMLFAVHCVLFLSRLANAQPLCNTQLQLSLFLDESYSANANLIRF
GVPSEAVGVFYNDALRYLAQHCKCGSTLLDETCVDTKFNSDKEVSSLRAV
VDSDEGIANASKLFRLYDSQKTLYDLTKTQEESFKLGLELVNLNTHDLDI
ILSLGWQGVQFPSDDSFFQDDSLAQKTACSSYSPVTLRDEFKYPASAATA
YVLSLVQNVRRAGGNLTIAYELLANHTSLVFNGVRCQKLSGDKLKIPIEY
MRDYKNQAQKLLDESKGETSSVDLNDVRGVSSDAKLYLHPLVQKFSSLIS
YGDSETVLYTRSGLLGGELVERISVDTVLQNDLSLIASSSLLGSIVSGIS
ATTQNAHRGTCSAGWIFVSRAVSLMSADEECCSDKCELLGLSLSDPFLWS
IEQEDCCANCNLFVCQHQTLLPESIPLNLAPPTSYPTSVDL*

spliced messenger RNA

>Ggra8913.t1 ID=Ggra8913.t1|Name=Ggra8913.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1326bp|location=Sequence derived from alignment at tig00000860_pilon:790264..791589+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATGAGGAGAGGAATGCTTTTTGCTGTCCATTGTGTTCTCTTTCT
TTCCAGATTGGCAAATGCACAGCCTCTTTGCAACACTCAACTTCAACTAT
CGCTATTCTTAGATGAATCTTATTCGGCAAACGCAAACCTTATTCGGTTC
GGAGTTCCTTCCGAAGCGGTCGGCGTTTTCTATAATGATGCTTTGAGGTA
TCTCGCCCAGCACTGCAAATGTGGTTCTACTCTGCTTGATGAAACCTGTG
TGGATACTAAGTTCAATTCCGACAAAGAGGTGTCTTCCTTGCGGGCAGTG
GTGGACAGTGATGAAGGCATTGCAAATGCTTCAAAGCTCTTTCGACTGTA
TGACTCGCAGAAGACTCTCTATGATTTGACTAAAACCCAAGAGGAAAGCT
TTAAACTCGGATTAGAGCTGGTGAACTTGAATACCCATGATTTGGACATC
ATACTTTCCTTGGGATGGCAGGGTGTGCAATTCCCTTCAGATGATTCTTT
CTTCCAAGATGACAGCTTAGCCCAAAAAACTGCGTGCAGTTCTTATAGCC
CAGTTACTCTCCGGGATGAATTTAAATATCCTGCCTCCGCTGCCACTGCA
TACGTTCTTAGTCTCGTGCAGAATGTGAGAAGAGCTGGGGGCAATTTGAC
AATCGCATATGAACTCTTGGCCAACCACACATCCTTAGTATTCAATGGAG
TTCGTTGTCAGAAGTTAAGTGGTGATAAGTTGAAGATCCCTATTGAATAC
ATGAGAGATTACAAGAACCAAGCTCAGAAGCTGTTGGACGAGTCCAAAGG
CGAGACTTCATCCGTGGACTTGAACGATGTTCGTGGGGTTTCTTCGGACG
CAAAACTCTATCTTCATCCGCTGGTCCAAAAGTTTTCGTCTTTAATATCA
TACGGAGATAGCGAAACAGTTCTCTACACGCGCTCTGGACTGCTAGGAGG
TGAATTGGTTGAGCGAATTTCAGTGGACACAGTGCTTCAAAATGACCTTA
GTCTAATTGCGAGCAGTTCTCTATTGGGTTCCATAGTTTCAGGGATCTCT
GCAACGACTCAGAACGCTCACCGCGGAACATGCTCTGCAGGATGGATCTT
CGTTTCCAGAGCAGTTTCACTGATGAGCGCAGACGAGGAATGCTGTTCAG
ACAAATGTGAGCTATTGGGGCTTTCCTTAAGCGACCCTTTCCTTTGGAGC
ATAGAGCAGGAAGATTGTTGTGCGAACTGCAATCTCTTTGTCTGCCAGCA
TCAGACTCTGCTCCCAGAATCTATTCCCCTGAATCTAGCTCCACCGACAT
CCTACCCGACTAGTGTTGACTTGTGA

protein sequence of Ggra8913.t1

>Ggra8913.t1 ID=Ggra8913.t1|Name=Ggra8913.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=442bp
MDMRRGMLFAVHCVLFLSRLANAQPLCNTQLQLSLFLDESYSANANLIRF
GVPSEAVGVFYNDALRYLAQHCKCGSTLLDETCVDTKFNSDKEVSSLRAV
VDSDEGIANASKLFRLYDSQKTLYDLTKTQEESFKLGLELVNLNTHDLDI
ILSLGWQGVQFPSDDSFFQDDSLAQKTACSSYSPVTLRDEFKYPASAATA
YVLSLVQNVRRAGGNLTIAYELLANHTSLVFNGVRCQKLSGDKLKIPIEY
MRDYKNQAQKLLDESKGETSSVDLNDVRGVSSDAKLYLHPLVQKFSSLIS
YGDSETVLYTRSGLLGGELVERISVDTVLQNDLSLIASSSLLGSIVSGIS
ATTQNAHRGTCSAGWIFVSRAVSLMSADEECCSDKCELLGLSLSDPFLWS
IEQEDCCANCNLFVCQHQTLLPESIPLNLAPPTSYPTSVDL*

mRNA from alignment at tig00000860_pilon:790264..791589+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8913.t1 ID=Ggra8913.t1|Name=Ggra8913.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1326bp|location=Sequence derived from alignment at tig00000860_pilon:790264..791589+ (Gracilaria gracilis GNS1m male)
ATGGACATGAGGAGAGGAATGCTTTTTGCTGTCCATTGTGTTCTCTTTCT
TTCCAGATTGGCAAATGCACAGCCTCTTTGCAACACTCAACTTCAACTAT
CGCTATTCTTAGATGAATCTTATTCGGCAAACGCAAACCTTATTCGGTTC
GGAGTTCCTTCCGAAGCGGTCGGCGTTTTCTATAATGATGCTTTGAGGTA
TCTCGCCCAGCACTGCAAATGTGGTTCTACTCTGCTTGATGAAACCTGTG
TGGATACTAAGTTCAATTCCGACAAAGAGGTGTCTTCCTTGCGGGCAGTG
GTGGACAGTGATGAAGGCATTGCAAATGCTTCAAAGCTCTTTCGACTGTA
TGACTCGCAGAAGACTCTCTATGATTTGACTAAAACCCAAGAGGAAAGCT
TTAAACTCGGATTAGAGCTGGTGAACTTGAATACCCATGATTTGGACATC
ATACTTTCCTTGGGATGGCAGGGTGTGCAATTCCCTTCAGATGATTCTTT
CTTCCAAGATGACAGCTTAGCCCAAAAAACTGCGTGCAGTTCTTATAGCC
CAGTTACTCTCCGGGATGAATTTAAATATCCTGCCTCCGCTGCCACTGCA
TACGTTCTTAGTCTCGTGCAGAATGTGAGAAGAGCTGGGGGCAATTTGAC
AATCGCATATGAACTCTTGGCCAACCACACATCCTTAGTATTCAATGGAG
TTCGTTGTCAGAAGTTAAGTGGTGATAAGTTGAAGATCCCTATTGAATAC
ATGAGAGATTACAAGAACCAAGCTCAGAAGCTGTTGGACGAGTCCAAAGG
CGAGACTTCATCCGTGGACTTGAACGATGTTCGTGGGGTTTCTTCGGACG
CAAAACTCTATCTTCATCCGCTGGTCCAAAAGTTTTCGTCTTTAATATCA
TACGGAGATAGCGAAACAGTTCTCTACACGCGCTCTGGACTGCTAGGAGG
TGAATTGGTTGAGCGAATTTCAGTGGACACAGTGCTTCAAAATGACCTTA
GTCTAATTGCGAGCAGTTCTCTATTGGGTTCCATAGTTTCAGGGATCTCT
GCAACGACTCAGAACGCTCACCGCGGAACATGCTCTGCAGGATGGATCTT
CGTTTCCAGAGCAGTTTCACTGATGAGCGCAGACGAGGAATGCTGTTCAG
ACAAATGTGAGCTATTGGGGCTTTCCTTAAGCGACCCTTTCCTTTGGAGC
ATAGAGCAGGAAGATTGTTGTGCGAACTGCAATCTCTTTGTCTGCCAGCA
TCAGACTCTGCTCCCAGAATCTATTCCCCTGAATCTAGCTCCACCGACAT
CCTACCCGACTAGTGTTGACTTGTGA

Coding sequence (CDS) from alignment at tig00000860_pilon:790264..791589+

>Ggra8913.t1 ID=Ggra8913.t1|Name=Ggra8913.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1326bp|location=Sequence derived from alignment at tig00000860_pilon:790264..791589+ (Gracilaria gracilis GNS1m male)
ATGGACATGAGGAGAGGAATGCTTTTTGCTGTCCATTGTGTTCTCTTTCT
TTCCAGATTGGCAAATGCACAGCCTCTTTGCAACACTCAACTTCAACTAT
CGCTATTCTTAGATGAATCTTATTCGGCAAACGCAAACCTTATTCGGTTC
GGAGTTCCTTCCGAAGCGGTCGGCGTTTTCTATAATGATGCTTTGAGGTA
TCTCGCCCAGCACTGCAAATGTGGTTCTACTCTGCTTGATGAAACCTGTG
TGGATACTAAGTTCAATTCCGACAAAGAGGTGTCTTCCTTGCGGGCAGTG
GTGGACAGTGATGAAGGCATTGCAAATGCTTCAAAGCTCTTTCGACTGTA
TGACTCGCAGAAGACTCTCTATGATTTGACTAAAACCCAAGAGGAAAGCT
TTAAACTCGGATTAGAGCTGGTGAACTTGAATACCCATGATTTGGACATC
ATACTTTCCTTGGGATGGCAGGGTGTGCAATTCCCTTCAGATGATTCTTT
CTTCCAAGATGACAGCTTAGCCCAAAAAACTGCGTGCAGTTCTTATAGCC
CAGTTACTCTCCGGGATGAATTTAAATATCCTGCCTCCGCTGCCACTGCA
TACGTTCTTAGTCTCGTGCAGAATGTGAGAAGAGCTGGGGGCAATTTGAC
AATCGCATATGAACTCTTGGCCAACCACACATCCTTAGTATTCAATGGAG
TTCGTTGTCAGAAGTTAAGTGGTGATAAGTTGAAGATCCCTATTGAATAC
ATGAGAGATTACAAGAACCAAGCTCAGAAGCTGTTGGACGAGTCCAAAGG
CGAGACTTCATCCGTGGACTTGAACGATGTTCGTGGGGTTTCTTCGGACG
CAAAACTCTATCTTCATCCGCTGGTCCAAAAGTTTTCGTCTTTAATATCA
TACGGAGATAGCGAAACAGTTCTCTACACGCGCTCTGGACTGCTAGGAGG
TGAATTGGTTGAGCGAATTTCAGTGGACACAGTGCTTCAAAATGACCTTA
GTCTAATTGCGAGCAGTTCTCTATTGGGTTCCATAGTTTCAGGGATCTCT
GCAACGACTCAGAACGCTCACCGCGGAACATGCTCTGCAGGATGGATCTT
CGTTTCCAGAGCAGTTTCACTGATGAGCGCAGACGAGGAATGCTGTTCAG
ACAAATGTGAGCTATTGGGGCTTTCCTTAAGCGACCCTTTCCTTTGGAGC
ATAGAGCAGGAAGATTGTTGTGCGAACTGCAATCTCTTTGTCTGCCAGCA
TCAGACTCTGCTCCCAGAATCTATTCCCCTGAATCTAGCTCCACCGACAT
CCTACCCGACTAGTGTTGACTTGTGA