Ggra8912.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8912.t1
Unique NameGgra8912.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length367
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:788322..789422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR475CT
PFAMsGFO_IDH_MocA,GFO_IDH_MocA_C
Max annot lvl2759|Eukaryota
KEGG rclassRC00182
KEGG koko:K00010
KEGG ReactionR01183,R09951
KEGG Pathwayko00521,ko00562,ko01100,ko01120,ko01130,map00521,map00562,map01100,map01120,map01130
Evalue1.48e-140
EggNOG OGsCOG0673@1|root,KOG2741@2759|Eukaryota
EC1.1.1.18,1.1.1.369
DescriptionD-xylose 1-dehydrogenase (NADP ) activity
COG categoryV
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8912Ggra8912Gracilaria gracilis GNS1m malegenetig00000860_pilon 788322..789422 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8912.t1.stop1Ggra8912.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 788322..788324 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8912.t1.CDS1Ggra8912.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 788322..789422 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8912.t1.exon1Ggra8912.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 788322..789422 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8912.t1.start1Ggra8912.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 789420..789422 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8912.t1Ggra8912.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 788322..789422 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8912.t1 ID=Ggra8912.t1|Name=Ggra8912.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=367bp
MSLLSRAAIAGASLRRALSTSAAPVRVGIIGAGRIGQVHAKAITAMHGAE
VATIADPFEKFGLAAAETFNTKYTPNWEDMLSDETIDGIVIGSPTPFHAE
QIVKSAEAGKAIMCEKPISNDLATIDKCLDVVEKTKARLLIGFQRRFDAN
FKEVSKQVTDGVIGEVRMFQINSRDPAPPPAEYLANSGGIFLDMMSHDFD
QARFCTGAEIEEVFVAGKAFEEAAQQADDLDTVLVMLKMSNGAIGTIGNS
RRCAYGYDQRIEVFGSSGMLSSNNRTPHTVNISNESSVSSPLPYSFFMDR
YALAYSGVMEAFVKMIREGTPPPVTGADGRAPIVAAMAANKSVKEGRPVR
LAEVDITDASAQSAQA*
back to top

spliced messenger RNA

>Ggra8912.t1 ID=Ggra8912.t1|Name=Ggra8912.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1101bp|location=Sequence derived from alignment at tig00000860_pilon:788322..789422- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCTGCTTTCCCGTGCTGCTATAGCCGGAGCTTCTCTGCGCCGCGC
TTTGTCTACATCAGCCGCCCCTGTCCGCGTCGGAATCATAGGTGCTGGCC
GAATCGGTCAAGTGCATGCTAAGGCGATTACCGCAATGCACGGTGCAGAG
GTTGCCACCATCGCTGACCCATTCGAAAAGTTTGGTTTGGCCGCAGCGGA
GACCTTCAACACGAAGTATACTCCGAATTGGGAGGACATGCTTTCTGACG
AGACAATTGACGGTATCGTCATTGGATCTCCCACTCCTTTCCATGCGGAG
CAAATCGTGAAGAGCGCAGAAGCCGGGAAAGCAATCATGTGCGAGAAGCC
TATCTCCAATGACCTTGCCACTATCGACAAGTGCCTTGATGTCGTTGAAA
AGACGAAAGCACGTTTGCTTATTGGCTTCCAGCGTCGTTTTGACGCAAAC
TTTAAGGAAGTGAGCAAGCAAGTGACTGATGGAGTCATTGGCGAGGTGCG
AATGTTCCAGATCAACTCTCGCGACCCTGCACCCCCACCAGCTGAATACC
TTGCTAATTCTGGAGGTATCTTCCTTGACATGATGAGCCACGATTTCGAC
CAGGCCAGATTCTGCACTGGGGCTGAAATCGAAGAAGTATTCGTTGCGGG
AAAGGCATTTGAAGAGGCTGCGCAACAGGCAGACGACTTGGATACCGTCC
TTGTAATGCTCAAGATGTCTAACGGAGCCATTGGTACAATTGGCAACTCA
CGTCGTTGTGCTTACGGTTATGATCAACGCATTGAAGTGTTCGGCAGCAG
CGGAATGCTCTCTAGCAACAACAGAACTCCCCACACCGTGAACATTAGCA
ATGAGAGCTCTGTTTCTTCCCCGCTCCCCTATTCATTTTTCATGGACAGA
TACGCCCTTGCCTATTCAGGTGTCATGGAAGCATTCGTGAAGATGATTCG
TGAAGGTACACCACCTCCGGTCACAGGTGCGGATGGTCGGGCACCCATTG
TAGCTGCGATGGCCGCTAACAAATCTGTCAAAGAGGGACGTCCAGTGCGT
CTGGCAGAGGTAGACATTACGGATGCGTCTGCGCAATCGGCGCAAGCGTA
G
back to top

protein sequence of Ggra8912.t1

>Ggra8912.t1 ID=Ggra8912.t1|Name=Ggra8912.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=367bp
MSLLSRAAIAGASLRRALSTSAAPVRVGIIGAGRIGQVHAKAITAMHGAE
VATIADPFEKFGLAAAETFNTKYTPNWEDMLSDETIDGIVIGSPTPFHAE
QIVKSAEAGKAIMCEKPISNDLATIDKCLDVVEKTKARLLIGFQRRFDAN
FKEVSKQVTDGVIGEVRMFQINSRDPAPPPAEYLANSGGIFLDMMSHDFD
QARFCTGAEIEEVFVAGKAFEEAAQQADDLDTVLVMLKMSNGAIGTIGNS
RRCAYGYDQRIEVFGSSGMLSSNNRTPHTVNISNESSVSSPLPYSFFMDR
YALAYSGVMEAFVKMIREGTPPPVTGADGRAPIVAAMAANKSVKEGRPVR
LAEVDITDASAQSAQA*
back to top

mRNA from alignment at tig00000860_pilon:788322..789422-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8912.t1 ID=Ggra8912.t1|Name=Ggra8912.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1101bp|location=Sequence derived from alignment at tig00000860_pilon:788322..789422- (Gracilaria gracilis GNS1m male)
ATGTCTCTGCTTTCCCGTGCTGCTATAGCCGGAGCTTCTCTGCGCCGCGC
TTTGTCTACATCAGCCGCCCCTGTCCGCGTCGGAATCATAGGTGCTGGCC
GAATCGGTCAAGTGCATGCTAAGGCGATTACCGCAATGCACGGTGCAGAG
GTTGCCACCATCGCTGACCCATTCGAAAAGTTTGGTTTGGCCGCAGCGGA
GACCTTCAACACGAAGTATACTCCGAATTGGGAGGACATGCTTTCTGACG
AGACAATTGACGGTATCGTCATTGGATCTCCCACTCCTTTCCATGCGGAG
CAAATCGTGAAGAGCGCAGAAGCCGGGAAAGCAATCATGTGCGAGAAGCC
TATCTCCAATGACCTTGCCACTATCGACAAGTGCCTTGATGTCGTTGAAA
AGACGAAAGCACGTTTGCTTATTGGCTTCCAGCGTCGTTTTGACGCAAAC
TTTAAGGAAGTGAGCAAGCAAGTGACTGATGGAGTCATTGGCGAGGTGCG
AATGTTCCAGATCAACTCTCGCGACCCTGCACCCCCACCAGCTGAATACC
TTGCTAATTCTGGAGGTATCTTCCTTGACATGATGAGCCACGATTTCGAC
CAGGCCAGATTCTGCACTGGGGCTGAAATCGAAGAAGTATTCGTTGCGGG
AAAGGCATTTGAAGAGGCTGCGCAACAGGCAGACGACTTGGATACCGTCC
TTGTAATGCTCAAGATGTCTAACGGAGCCATTGGTACAATTGGCAACTCA
CGTCGTTGTGCTTACGGTTATGATCAACGCATTGAAGTGTTCGGCAGCAG
CGGAATGCTCTCTAGCAACAACAGAACTCCCCACACCGTGAACATTAGCA
ATGAGAGCTCTGTTTCTTCCCCGCTCCCCTATTCATTTTTCATGGACAGA
TACGCCCTTGCCTATTCAGGTGTCATGGAAGCATTCGTGAAGATGATTCG
TGAAGGTACACCACCTCCGGTCACAGGTGCGGATGGTCGGGCACCCATTG
TAGCTGCGATGGCCGCTAACAAATCTGTCAAAGAGGGACGTCCAGTGCGT
CTGGCAGAGGTAGACATTACGGATGCGTCTGCGCAATCGGCGCAAGCGTA
G
back to top

Coding sequence (CDS) from alignment at tig00000860_pilon:788322..789422-

>Ggra8912.t1 ID=Ggra8912.t1|Name=Ggra8912.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1101bp|location=Sequence derived from alignment at tig00000860_pilon:788322..789422- (Gracilaria gracilis GNS1m male)
ATGTCTCTGCTTTCCCGTGCTGCTATAGCCGGAGCTTCTCTGCGCCGCGC
TTTGTCTACATCAGCCGCCCCTGTCCGCGTCGGAATCATAGGTGCTGGCC
GAATCGGTCAAGTGCATGCTAAGGCGATTACCGCAATGCACGGTGCAGAG
GTTGCCACCATCGCTGACCCATTCGAAAAGTTTGGTTTGGCCGCAGCGGA
GACCTTCAACACGAAGTATACTCCGAATTGGGAGGACATGCTTTCTGACG
AGACAATTGACGGTATCGTCATTGGATCTCCCACTCCTTTCCATGCGGAG
CAAATCGTGAAGAGCGCAGAAGCCGGGAAAGCAATCATGTGCGAGAAGCC
TATCTCCAATGACCTTGCCACTATCGACAAGTGCCTTGATGTCGTTGAAA
AGACGAAAGCACGTTTGCTTATTGGCTTCCAGCGTCGTTTTGACGCAAAC
TTTAAGGAAGTGAGCAAGCAAGTGACTGATGGAGTCATTGGCGAGGTGCG
AATGTTCCAGATCAACTCTCGCGACCCTGCACCCCCACCAGCTGAATACC
TTGCTAATTCTGGAGGTATCTTCCTTGACATGATGAGCCACGATTTCGAC
CAGGCCAGATTCTGCACTGGGGCTGAAATCGAAGAAGTATTCGTTGCGGG
AAAGGCATTTGAAGAGGCTGCGCAACAGGCAGACGACTTGGATACCGTCC
TTGTAATGCTCAAGATGTCTAACGGAGCCATTGGTACAATTGGCAACTCA
CGTCGTTGTGCTTACGGTTATGATCAACGCATTGAAGTGTTCGGCAGCAG
CGGAATGCTCTCTAGCAACAACAGAACTCCCCACACCGTGAACATTAGCA
ATGAGAGCTCTGTTTCTTCCCCGCTCCCCTATTCATTTTTCATGGACAGA
TACGCCCTTGCCTATTCAGGTGTCATGGAAGCATTCGTGAAGATGATTCG
TGAAGGTACACCACCTCCGGTCACAGGTGCGGATGGTCGGGCACCCATTG
TAGCTGCGATGGCCGCTAACAAATCTGTCAAAGAGGGACGTCCAGTGCGT
CTGGCAGAGGTAGACATTACGGATGCGTCTGCGCAATCGGCGCAAGCGTA
G
back to top