Ggra8911.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8911.t1
Unique Name	Ggra8911.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	425

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:786302..787576 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8911	Ggra8911	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 786302..787576 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8911.t1.stop1	Ggra8911.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 786302..786304 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8911.t1.CDS1	Ggra8911.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 786302..787576 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8911.t1.exon1	Ggra8911.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 786302..787576 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8911.t1.start1	Ggra8911.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 787574..787576 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8911.t1	Ggra8911.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 786302..787576 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:786302..787576-
coding sequence from alignment at tig00000860_pilon:786302..787576-

mRNA sequence

>Ggra8911.t1 ID=Ggra8911.t1|Name=Ggra8911.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=425bp
MAHVKWLSLVLLFNHAFAQTFCTSTIDLGTFLTRSFRANVDLVRMGVPSE
VVKSLYDKAIMDVTLSCNCSSSTIDSNCLSLFFTETMEVAYLRGLLDIDS
VTEEPTDSFGLLQPSLKLFPLFRANLTLHGLSVSQTEELNKGLDHLLLNS
KSVVSIQSRYWQKSRFPSDEEVLQDTFEAQKAACDAHQATVNLNNLTFPS
WAATAYVVGLVLEVRKAQGNETAAMMMLADHTSFVFNGVRCYRVSGSHLD
YPVSKMEQYMRTTRELLDETNAVFKPQVSDIRKISVIPSLYYSYLVATFS
SLSSGGDGKSILITDGTTVRRESVTNILQEDIVDTDTPNPNNIRQECPDG
YILVSRAVPIVSLDERCCSEKCEFAELSLVDPFSFAISQENCCAFCNYFD
CTDHGLLPESTPLKYSGTPTLISI*

spliced messenger RNA

>Ggra8911.t1 ID=Ggra8911.t1|Name=Ggra8911.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1275bp|location=Sequence derived from alignment at tig00000860_pilon:786302..787576- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCACGTTAAATGGCTGTCCCTGGTACTCCTCTTCAATCATGCCTT
TGCTCAAACGTTCTGCACTTCTACGATTGATCTTGGTACATTCTTAACGA
GATCCTTCCGCGCTAATGTAGATCTTGTACGCATGGGAGTACCGTCCGAA
GTTGTCAAGAGTTTATATGACAAGGCCATAATGGATGTAACGCTATCATG
CAATTGCTCTTCTTCGACAATTGACTCAAATTGCTTGTCTCTGTTCTTTA
CGGAGACAATGGAAGTTGCGTACCTGAGAGGTTTGCTGGACATAGACTCC
GTTACAGAGGAACCAACGGATAGCTTCGGGCTTTTGCAGCCTAGTCTGAA
GCTATTCCCCTTGTTTCGAGCAAACCTGACTCTGCATGGCTTATCTGTTT
CGCAAACAGAAGAGCTCAACAAAGGTCTTGATCATCTGCTTTTGAATTCG
AAGTCTGTGGTGAGCATCCAGTCTCGATATTGGCAAAAATCTCGGTTTCC
CTCAGACGAAGAGGTTCTTCAAGATACTTTCGAAGCTCAGAAAGCTGCGT
GTGATGCTCATCAAGCTACCGTCAATCTTAACAACCTTACATTCCCTTCT
TGGGCGGCAACCGCCTACGTCGTTGGCCTCGTTCTTGAGGTTCGCAAGGC
TCAAGGAAATGAAACAGCCGCGATGATGATGCTTGCAGATCATACGTCTT
TTGTTTTTAATGGCGTACGGTGTTATCGGGTGAGTGGATCTCATCTGGAC
TATCCAGTGAGCAAAATGGAGCAATACATGAGGACCACACGGGAGCTACT
AGACGAGACAAACGCGGTTTTCAAGCCGCAGGTGAGTGATATTCGGAAGA
TTTCTGTCATTCCTTCTCTGTATTACTCTTACTTGGTGGCCACCTTTTCA
TCTCTTAGCTCAGGCGGCGACGGTAAGAGCATACTAATCACGGACGGTAC
GACAGTCAGACGGGAGTCTGTGACTAATATTCTGCAAGAGGACATTGTCG
ACACCGATACTCCAAATCCGAACAATATACGCCAAGAGTGTCCAGATGGA
TACATTTTGGTATCGAGAGCCGTGCCTATCGTGAGTTTGGACGAGAGGTG
CTGTTCCGAGAAATGTGAGTTCGCTGAACTGTCATTAGTCGATCCATTCT
CCTTTGCGATCAGCCAAGAAAACTGCTGCGCATTCTGCAACTATTTCGAT
TGTACTGATCATGGTCTTCTCCCGGAATCAACGCCTCTCAAGTACTCGGG
AACCCCCACGTTGATTTCCATTTAG

protein sequence of Ggra8911.t1

>Ggra8911.t1 ID=Ggra8911.t1|Name=Ggra8911.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=425bp
MAHVKWLSLVLLFNHAFAQTFCTSTIDLGTFLTRSFRANVDLVRMGVPSE
VVKSLYDKAIMDVTLSCNCSSSTIDSNCLSLFFTETMEVAYLRGLLDIDS
VTEEPTDSFGLLQPSLKLFPLFRANLTLHGLSVSQTEELNKGLDHLLLNS
KSVVSIQSRYWQKSRFPSDEEVLQDTFEAQKAACDAHQATVNLNNLTFPS
WAATAYVVGLVLEVRKAQGNETAAMMMLADHTSFVFNGVRCYRVSGSHLD
YPVSKMEQYMRTTRELLDETNAVFKPQVSDIRKISVIPSLYYSYLVATFS
SLSSGGDGKSILITDGTTVRRESVTNILQEDIVDTDTPNPNNIRQECPDG
YILVSRAVPIVSLDERCCSEKCEFAELSLVDPFSFAISQENCCAFCNYFD
CTDHGLLPESTPLKYSGTPTLISI*

mRNA from alignment at tig00000860_pilon:786302..787576-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8911.t1 ID=Ggra8911.t1|Name=Ggra8911.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1275bp|location=Sequence derived from alignment at tig00000860_pilon:786302..787576- (Gracilaria gracilis GNS1m male)
ATGGCGCACGTTAAATGGCTGTCCCTGGTACTCCTCTTCAATCATGCCTT
TGCTCAAACGTTCTGCACTTCTACGATTGATCTTGGTACATTCTTAACGA
GATCCTTCCGCGCTAATGTAGATCTTGTACGCATGGGAGTACCGTCCGAA
GTTGTCAAGAGTTTATATGACAAGGCCATAATGGATGTAACGCTATCATG
CAATTGCTCTTCTTCGACAATTGACTCAAATTGCTTGTCTCTGTTCTTTA
CGGAGACAATGGAAGTTGCGTACCTGAGAGGTTTGCTGGACATAGACTCC
GTTACAGAGGAACCAACGGATAGCTTCGGGCTTTTGCAGCCTAGTCTGAA
GCTATTCCCCTTGTTTCGAGCAAACCTGACTCTGCATGGCTTATCTGTTT
CGCAAACAGAAGAGCTCAACAAAGGTCTTGATCATCTGCTTTTGAATTCG
AAGTCTGTGGTGAGCATCCAGTCTCGATATTGGCAAAAATCTCGGTTTCC
CTCAGACGAAGAGGTTCTTCAAGATACTTTCGAAGCTCAGAAAGCTGCGT
GTGATGCTCATCAAGCTACCGTCAATCTTAACAACCTTACATTCCCTTCT
TGGGCGGCAACCGCCTACGTCGTTGGCCTCGTTCTTGAGGTTCGCAAGGC
TCAAGGAAATGAAACAGCCGCGATGATGATGCTTGCAGATCATACGTCTT
TTGTTTTTAATGGCGTACGGTGTTATCGGGTGAGTGGATCTCATCTGGAC
TATCCAGTGAGCAAAATGGAGCAATACATGAGGACCACACGGGAGCTACT
AGACGAGACAAACGCGGTTTTCAAGCCGCAGGTGAGTGATATTCGGAAGA
TTTCTGTCATTCCTTCTCTGTATTACTCTTACTTGGTGGCCACCTTTTCA
TCTCTTAGCTCAGGCGGCGACGGTAAGAGCATACTAATCACGGACGGTAC
GACAGTCAGACGGGAGTCTGTGACTAATATTCTGCAAGAGGACATTGTCG
ACACCGATACTCCAAATCCGAACAATATACGCCAAGAGTGTCCAGATGGA
TACATTTTGGTATCGAGAGCCGTGCCTATCGTGAGTTTGGACGAGAGGTG
CTGTTCCGAGAAATGTGAGTTCGCTGAACTGTCATTAGTCGATCCATTCT
CCTTTGCGATCAGCCAAGAAAACTGCTGCGCATTCTGCAACTATTTCGAT
TGTACTGATCATGGTCTTCTCCCGGAATCAACGCCTCTCAAGTACTCGGG
AACCCCCACGTTGATTTCCATTTAG

Coding sequence (CDS) from alignment at tig00000860_pilon:786302..787576-

>Ggra8911.t1 ID=Ggra8911.t1|Name=Ggra8911.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1275bp|location=Sequence derived from alignment at tig00000860_pilon:786302..787576- (Gracilaria gracilis GNS1m male)
ATGGCGCACGTTAAATGGCTGTCCCTGGTACTCCTCTTCAATCATGCCTT
TGCTCAAACGTTCTGCACTTCTACGATTGATCTTGGTACATTCTTAACGA
GATCCTTCCGCGCTAATGTAGATCTTGTACGCATGGGAGTACCGTCCGAA
GTTGTCAAGAGTTTATATGACAAGGCCATAATGGATGTAACGCTATCATG
CAATTGCTCTTCTTCGACAATTGACTCAAATTGCTTGTCTCTGTTCTTTA
CGGAGACAATGGAAGTTGCGTACCTGAGAGGTTTGCTGGACATAGACTCC
GTTACAGAGGAACCAACGGATAGCTTCGGGCTTTTGCAGCCTAGTCTGAA
GCTATTCCCCTTGTTTCGAGCAAACCTGACTCTGCATGGCTTATCTGTTT
CGCAAACAGAAGAGCTCAACAAAGGTCTTGATCATCTGCTTTTGAATTCG
AAGTCTGTGGTGAGCATCCAGTCTCGATATTGGCAAAAATCTCGGTTTCC
CTCAGACGAAGAGGTTCTTCAAGATACTTTCGAAGCTCAGAAAGCTGCGT
GTGATGCTCATCAAGCTACCGTCAATCTTAACAACCTTACATTCCCTTCT
TGGGCGGCAACCGCCTACGTCGTTGGCCTCGTTCTTGAGGTTCGCAAGGC
TCAAGGAAATGAAACAGCCGCGATGATGATGCTTGCAGATCATACGTCTT
TTGTTTTTAATGGCGTACGGTGTTATCGGGTGAGTGGATCTCATCTGGAC
TATCCAGTGAGCAAAATGGAGCAATACATGAGGACCACACGGGAGCTACT
AGACGAGACAAACGCGGTTTTCAAGCCGCAGGTGAGTGATATTCGGAAGA
TTTCTGTCATTCCTTCTCTGTATTACTCTTACTTGGTGGCCACCTTTTCA
TCTCTTAGCTCAGGCGGCGACGGTAAGAGCATACTAATCACGGACGGTAC
GACAGTCAGACGGGAGTCTGTGACTAATATTCTGCAAGAGGACATTGTCG
ACACCGATACTCCAAATCCGAACAATATACGCCAAGAGTGTCCAGATGGA
TACATTTTGGTATCGAGAGCCGTGCCTATCGTGAGTTTGGACGAGAGGTG
CTGTTCCGAGAAATGTGAGTTCGCTGAACTGTCATTAGTCGATCCATTCT
CCTTTGCGATCAGCCAAGAAAACTGCTGCGCATTCTGCAACTATTTCGAT
TGTACTGATCATGGTCTTCTCCCGGAATCAACGCCTCTCAAGTACTCGGG
AACCCCCACGTTGATTTCCATTTAG