Ggra8910.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8910.t1
Unique NameGgra8910.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length296
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:784780..785667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8910Ggra8910Gracilaria gracilis GNS1m malegenetig00000860_pilon 784780..785667 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8910.t1.stop1Ggra8910.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 784780..784782 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8910.t1.CDS1Ggra8910.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 784780..785667 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8910.t1.exon1Ggra8910.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 784780..785667 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8910.t1.start1Ggra8910.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 785665..785667 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8910.t1Ggra8910.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 784780..785667 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8910.t1 ID=Ggra8910.t1|Name=Ggra8910.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=296bp
MAFITALPVGVKSTSSTLRSSFVCNQVVSGNASTSNTLRMGYGDYSYSTD
KTKGHVNQYYVDKFRIVTDFAKGIPASLADAKLGRDQKGRVVVPTGGIPQ
PVDPALPPRDETATPDPRIAEAEGVLYPWDPNYVDPKFAPETFADCEDDA
IADDAFQKFRSSVFEQRNSVLTEMDFGAVAHKQRIRAGFDEKYLLCLEGA
LDAAYARLQDITDPMMFTPYGEPQTEIPGQPFTKSVGAMDFQITPGEKIN
FWSSETPKSAPYKKPSGAQTPELPYNVSPTVEEMKEAQKARGLLP*
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spliced messenger RNA

>Ggra8910.t1 ID=Ggra8910.t1|Name=Ggra8910.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00000860_pilon:784780..785667- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATTCATCACTGCGTTGCCCGTCGGCGTCAAAAGCACGTCGTCGAC
GCTCCGTTCTTCATTTGTATGCAATCAAGTTGTTTCCGGCAATGCCTCCA
CCTCTAACACCCTGCGTATGGGTTACGGAGACTATAGCTACAGCACGGAT
AAAACCAAAGGCCATGTTAATCAATACTACGTCGACAAGTTCCGCATAGT
AACCGATTTTGCAAAGGGGATTCCCGCTAGCCTTGCAGACGCCAAACTCG
GTCGGGACCAGAAGGGCCGTGTCGTGGTACCAACCGGAGGTATCCCGCAA
CCTGTTGACCCAGCATTACCACCTCGCGATGAAACTGCTACCCCAGACCC
TCGTATCGCAGAAGCTGAGGGTGTTCTTTACCCTTGGGACCCCAACTACG
TGGACCCCAAGTTTGCTCCGGAAACATTTGCTGATTGTGAAGATGATGCA
ATCGCTGATGATGCGTTCCAGAAATTCCGTTCTTCCGTTTTCGAACAGCG
TAATTCGGTTTTGACGGAAATGGACTTTGGCGCTGTCGCGCATAAACAGC
GTATTAGAGCCGGTTTCGATGAAAAGTATTTGCTCTGTCTTGAGGGAGCT
CTCGATGCTGCTTACGCGCGTCTCCAAGATATCACAGATCCGATGATGTT
CACGCCGTACGGGGAGCCGCAGACCGAGATTCCTGGTCAGCCCTTTACTA
AAAGTGTCGGTGCTATGGACTTCCAAATCACCCCTGGTGAGAAGATCAAC
TTCTGGTCTAGTGAAACTCCTAAGAGTGCTCCGTATAAGAAGCCTTCTGG
GGCTCAGACGCCGGAACTACCCTACAACGTCAGTCCAACCGTAGAGGAGA
TGAAGGAAGCTCAGAAGGCTCGGGGCCTTCTTCCTTGA
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protein sequence of Ggra8910.t1

>Ggra8910.t1 ID=Ggra8910.t1|Name=Ggra8910.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=296bp
MAFITALPVGVKSTSSTLRSSFVCNQVVSGNASTSNTLRMGYGDYSYSTD
KTKGHVNQYYVDKFRIVTDFAKGIPASLADAKLGRDQKGRVVVPTGGIPQ
PVDPALPPRDETATPDPRIAEAEGVLYPWDPNYVDPKFAPETFADCEDDA
IADDAFQKFRSSVFEQRNSVLTEMDFGAVAHKQRIRAGFDEKYLLCLEGA
LDAAYARLQDITDPMMFTPYGEPQTEIPGQPFTKSVGAMDFQITPGEKIN
FWSSETPKSAPYKKPSGAQTPELPYNVSPTVEEMKEAQKARGLLP*
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mRNA from alignment at tig00000860_pilon:784780..785667-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8910.t1 ID=Ggra8910.t1|Name=Ggra8910.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00000860_pilon:784780..785667- (Gracilaria gracilis GNS1m male)
ATGGCATTCATCACTGCGTTGCCCGTCGGCGTCAAAAGCACGTCGTCGAC
GCTCCGTTCTTCATTTGTATGCAATCAAGTTGTTTCCGGCAATGCCTCCA
CCTCTAACACCCTGCGTATGGGTTACGGAGACTATAGCTACAGCACGGAT
AAAACCAAAGGCCATGTTAATCAATACTACGTCGACAAGTTCCGCATAGT
AACCGATTTTGCAAAGGGGATTCCCGCTAGCCTTGCAGACGCCAAACTCG
GTCGGGACCAGAAGGGCCGTGTCGTGGTACCAACCGGAGGTATCCCGCAA
CCTGTTGACCCAGCATTACCACCTCGCGATGAAACTGCTACCCCAGACCC
TCGTATCGCAGAAGCTGAGGGTGTTCTTTACCCTTGGGACCCCAACTACG
TGGACCCCAAGTTTGCTCCGGAAACATTTGCTGATTGTGAAGATGATGCA
ATCGCTGATGATGCGTTCCAGAAATTCCGTTCTTCCGTTTTCGAACAGCG
TAATTCGGTTTTGACGGAAATGGACTTTGGCGCTGTCGCGCATAAACAGC
GTATTAGAGCCGGTTTCGATGAAAAGTATTTGCTCTGTCTTGAGGGAGCT
CTCGATGCTGCTTACGCGCGTCTCCAAGATATCACAGATCCGATGATGTT
CACGCCGTACGGGGAGCCGCAGACCGAGATTCCTGGTCAGCCCTTTACTA
AAAGTGTCGGTGCTATGGACTTCCAAATCACCCCTGGTGAGAAGATCAAC
TTCTGGTCTAGTGAAACTCCTAAGAGTGCTCCGTATAAGAAGCCTTCTGG
GGCTCAGACGCCGGAACTACCCTACAACGTCAGTCCAACCGTAGAGGAGA
TGAAGGAAGCTCAGAAGGCTCGGGGCCTTCTTCCTTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:784780..785667-

>Ggra8910.t1 ID=Ggra8910.t1|Name=Ggra8910.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=888bp|location=Sequence derived from alignment at tig00000860_pilon:784780..785667- (Gracilaria gracilis GNS1m male)
ATGGCATTCATCACTGCGTTGCCCGTCGGCGTCAAAAGCACGTCGTCGAC
GCTCCGTTCTTCATTTGTATGCAATCAAGTTGTTTCCGGCAATGCCTCCA
CCTCTAACACCCTGCGTATGGGTTACGGAGACTATAGCTACAGCACGGAT
AAAACCAAAGGCCATGTTAATCAATACTACGTCGACAAGTTCCGCATAGT
AACCGATTTTGCAAAGGGGATTCCCGCTAGCCTTGCAGACGCCAAACTCG
GTCGGGACCAGAAGGGCCGTGTCGTGGTACCAACCGGAGGTATCCCGCAA
CCTGTTGACCCAGCATTACCACCTCGCGATGAAACTGCTACCCCAGACCC
TCGTATCGCAGAAGCTGAGGGTGTTCTTTACCCTTGGGACCCCAACTACG
TGGACCCCAAGTTTGCTCCGGAAACATTTGCTGATTGTGAAGATGATGCA
ATCGCTGATGATGCGTTCCAGAAATTCCGTTCTTCCGTTTTCGAACAGCG
TAATTCGGTTTTGACGGAAATGGACTTTGGCGCTGTCGCGCATAAACAGC
GTATTAGAGCCGGTTTCGATGAAAAGTATTTGCTCTGTCTTGAGGGAGCT
CTCGATGCTGCTTACGCGCGTCTCCAAGATATCACAGATCCGATGATGTT
CACGCCGTACGGGGAGCCGCAGACCGAGATTCCTGGTCAGCCCTTTACTA
AAAGTGTCGGTGCTATGGACTTCCAAATCACCCCTGGTGAGAAGATCAAC
TTCTGGTCTAGTGAAACTCCTAAGAGTGCTCCGTATAAGAAGCCTTCTGG
GGCTCAGACGCCGGAACTACCCTACAACGTCAGTCCAACCGTAGAGGAGA
TGAAGGAAGCTCAGAAGGCTCGGGGCCTTCTTCCTTGA
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