Ggra891.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra891.t1
Unique NameGgra891.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length255
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000231_piloncontigtig00000231_pilon:62964..63728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra891Ggra891Gracilaria gracilis GNS1m malegenetig00000231_pilon 62964..63728 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra891.t1.start1Ggra891.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000231_pilon 62964..62966 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra891.t1.CDS1Ggra891.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000231_pilon 62964..63728 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra891.t1.exon1Ggra891.t1.exon1Gracilaria gracilis GNS1m maleexontig00000231_pilon 62964..63728 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra891.t1.stop1Ggra891.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000231_pilon 63726..63728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra891.t1Ggra891.t1Gracilaria gracilis GNS1m malepolypeptidetig00000231_pilon 62964..63728 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra891.t1 ID=Ggra891.t1|Name=Ggra891.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=255bp
MAFKPKARRTVSAQPKSPAFCCIQTTRKRNPAPRPEIDEVIDLISEAESV
PCIGLKLREHSRSMLEEDRVECRFPVEALWKICVKKLERSDLNFFHSRAA
KLMVRVKARQGRSAYRGIGATEKNCDGLRYVLNFCQASGSWRNESLKNRR
MKELSTTVSQFLRWCVASSSCEKHDVWKKECLFHNISKLHLVEKLMDYFI
DCCERSTVKKKAEALLCVCQAAVEFERTSAPHPELSEVILLLESFISTKA
TGDF*
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spliced messenger RNA

>Ggra891.t1 ID=Ggra891.t1|Name=Ggra891.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=765bp|location=Sequence derived from alignment at tig00000231_pilon:62964..63728+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTCAAGCCAAAAGCAAGGCGAACAGTTTCAGCCCAACCGAAGTC
GCCAGCATTTTGTTGCATTCAGACTACAAGAAAGCGTAATCCTGCACCCA
GACCAGAAATTGATGAGGTGATTGACTTGATATCTGAAGCGGAATCAGTC
CCGTGCATTGGGCTCAAACTACGAGAGCATAGCAGAAGCATGCTTGAAGA
AGATCGGGTCGAGTGTCGTTTTCCCGTTGAAGCGCTCTGGAAAATTTGTG
TCAAGAAACTAGAGCGTTCAGATTTGAACTTCTTCCACTCTCGTGCGGCC
AAGCTTATGGTCCGCGTGAAAGCCAGGCAAGGCAGATCCGCTTACCGCGG
CATTGGGGCGACAGAGAAGAATTGTGATGGATTGCGATACGTTCTCAATT
TTTGTCAAGCTTCAGGAAGTTGGAGAAACGAGAGTTTGAAGAACAGAAGA
ATGAAAGAATTGTCCACCACGGTATCCCAATTCCTTCGATGGTGTGTTGC
AAGCTCTTCTTGTGAGAAACATGATGTGTGGAAGAAAGAGTGCCTCTTTC
ATAACATATCCAAACTACATCTCGTAGAAAAATTAATGGATTACTTCATC
GATTGTTGTGAAAGGTCCACAGTCAAGAAGAAGGCAGAGGCTCTACTCTG
CGTTTGTCAAGCGGCTGTTGAGTTTGAACGCACTTCGGCACCACACCCAG
AACTGAGTGAAGTAATTCTGCTTCTGGAGAGTTTCATTTCCACGAAAGCA
ACAGGAGACTTCTGA
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protein sequence of Ggra891.t1

>Ggra891.t1 ID=Ggra891.t1|Name=Ggra891.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=255bp
MAFKPKARRTVSAQPKSPAFCCIQTTRKRNPAPRPEIDEVIDLISEAESV
PCIGLKLREHSRSMLEEDRVECRFPVEALWKICVKKLERSDLNFFHSRAA
KLMVRVKARQGRSAYRGIGATEKNCDGLRYVLNFCQASGSWRNESLKNRR
MKELSTTVSQFLRWCVASSSCEKHDVWKKECLFHNISKLHLVEKLMDYFI
DCCERSTVKKKAEALLCVCQAAVEFERTSAPHPELSEVILLLESFISTKA
TGDF*
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mRNA from alignment at tig00000231_pilon:62964..63728+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra891.t1 ID=Ggra891.t1|Name=Ggra891.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=765bp|location=Sequence derived from alignment at tig00000231_pilon:62964..63728+ (Gracilaria gracilis GNS1m male)
ATGGCGTTCAAGCCAAAAGCAAGGCGAACAGTTTCAGCCCAACCGAAGTC
GCCAGCATTTTGTTGCATTCAGACTACAAGAAAGCGTAATCCTGCACCCA
GACCAGAAATTGATGAGGTGATTGACTTGATATCTGAAGCGGAATCAGTC
CCGTGCATTGGGCTCAAACTACGAGAGCATAGCAGAAGCATGCTTGAAGA
AGATCGGGTCGAGTGTCGTTTTCCCGTTGAAGCGCTCTGGAAAATTTGTG
TCAAGAAACTAGAGCGTTCAGATTTGAACTTCTTCCACTCTCGTGCGGCC
AAGCTTATGGTCCGCGTGAAAGCCAGGCAAGGCAGATCCGCTTACCGCGG
CATTGGGGCGACAGAGAAGAATTGTGATGGATTGCGATACGTTCTCAATT
TTTGTCAAGCTTCAGGAAGTTGGAGAAACGAGAGTTTGAAGAACAGAAGA
ATGAAAGAATTGTCCACCACGGTATCCCAATTCCTTCGATGGTGTGTTGC
AAGCTCTTCTTGTGAGAAACATGATGTGTGGAAGAAAGAGTGCCTCTTTC
ATAACATATCCAAACTACATCTCGTAGAAAAATTAATGGATTACTTCATC
GATTGTTGTGAAAGGTCCACAGTCAAGAAGAAGGCAGAGGCTCTACTCTG
CGTTTGTCAAGCGGCTGTTGAGTTTGAACGCACTTCGGCACCACACCCAG
AACTGAGTGAAGTAATTCTGCTTCTGGAGAGTTTCATTTCCACGAAAGCA
ACAGGAGACTTCTGA
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Coding sequence (CDS) from alignment at tig00000231_pilon:62964..63728+

>Ggra891.t1 ID=Ggra891.t1|Name=Ggra891.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=765bp|location=Sequence derived from alignment at tig00000231_pilon:62964..63728+ (Gracilaria gracilis GNS1m male)
ATGGCGTTCAAGCCAAAAGCAAGGCGAACAGTTTCAGCCCAACCGAAGTC
GCCAGCATTTTGTTGCATTCAGACTACAAGAAAGCGTAATCCTGCACCCA
GACCAGAAATTGATGAGGTGATTGACTTGATATCTGAAGCGGAATCAGTC
CCGTGCATTGGGCTCAAACTACGAGAGCATAGCAGAAGCATGCTTGAAGA
AGATCGGGTCGAGTGTCGTTTTCCCGTTGAAGCGCTCTGGAAAATTTGTG
TCAAGAAACTAGAGCGTTCAGATTTGAACTTCTTCCACTCTCGTGCGGCC
AAGCTTATGGTCCGCGTGAAAGCCAGGCAAGGCAGATCCGCTTACCGCGG
CATTGGGGCGACAGAGAAGAATTGTGATGGATTGCGATACGTTCTCAATT
TTTGTCAAGCTTCAGGAAGTTGGAGAAACGAGAGTTTGAAGAACAGAAGA
ATGAAAGAATTGTCCACCACGGTATCCCAATTCCTTCGATGGTGTGTTGC
AAGCTCTTCTTGTGAGAAACATGATGTGTGGAAGAAAGAGTGCCTCTTTC
ATAACATATCCAAACTACATCTCGTAGAAAAATTAATGGATTACTTCATC
GATTGTTGTGAAAGGTCCACAGTCAAGAAGAAGGCAGAGGCTCTACTCTG
CGTTTGTCAAGCGGCTGTTGAGTTTGAACGCACTTCGGCACCACACCCAG
AACTGAGTGAAGTAATTCTGCTTCTGGAGAGTTTCATTTCCACGAAAGCA
ACAGGAGACTTCTGA
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