Ggra8909.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8909.t1
Unique Name	Ggra8909.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	339

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:782850..783866 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	35128.Thaps6122
Max annot lvl	2836\|Bacillariophyta
Evalue	1.66e-10
EggNOG OGs	2BY6X@1\|root,2T7VN@2759\|Eukaryota,2XG9I@2836\|Bacillariophyta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8909	Ggra8909	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 782850..783866 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8909.t1.start1	Ggra8909.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 782850..782852 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8909.t1.CDS1	Ggra8909.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 782850..783866 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8909.t1.exon1	Ggra8909.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 782850..783866 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8909.t1.stop1	Ggra8909.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 783864..783866 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8909.t1	Ggra8909.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 782850..783866 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:782850..783866+
coding sequence from alignment at tig00000860_pilon:782850..783866+

mRNA sequence

>Ggra8909.t1 ID=Ggra8909.t1|Name=Ggra8909.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=339bp
MTVPQLRCNGATFKFRRYHDATDRDQVKRICANLYNSQDYVPRLLPAYAS
SSRCEPYVLEGPTGVAAFIVARHRQVLADHNAPFYKEIFIEALRVREDLQ
GVGVATNILIEATNAVRCALGKQPDLHIFSTTIPENKAMTQVFRKAGWKP
LSNMIIWPKEDEIRSLQNTGRSMLESLDMAHKISPNAIALASKWRKINDS
EDICSLVDQLRGNSSQFLRPGYFVAEGLPSAALFLKDELSKREERSAWRL
DCDQRLLGLLFIRPHVLERSSNAPPNIVSACVDDTYSAESAVVFAGNLLK
KASFQVSFDVGINAEKMESSLLLSSLKATHFIVYKHSK*

spliced messenger RNA

>Ggra8909.t1 ID=Ggra8909.t1|Name=Ggra8909.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000860_pilon:782850..783866+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGTACCACAATTACGTTGCAATGGGGCGACCTTTAAATTCCGACG
ATACCACGATGCAACCGACCGAGACCAAGTCAAGCGAATTTGCGCCAATC
TTTACAACTCGCAAGATTACGTGCCTCGTCTTTTGCCGGCATATGCTTCT
TCCAGCCGATGTGAACCTTATGTCCTAGAAGGTCCCACTGGTGTAGCTGC
CTTCATCGTTGCGAGACATAGACAAGTCCTTGCGGACCACAATGCTCCCT
TCTACAAAGAAATCTTTATTGAAGCTTTGAGAGTGCGAGAAGATTTACAA
GGGGTTGGAGTGGCTACAAATATCCTGATAGAGGCAACAAACGCTGTCAG
ATGTGCTCTTGGCAAACAACCTGACCTACACATTTTCTCTACTACCATCC
CGGAAAACAAAGCCATGACTCAAGTTTTCCGCAAAGCTGGATGGAAACCT
CTGAGCAACATGATCATCTGGCCGAAAGAGGATGAAATTCGCAGCCTCCA
AAACACTGGCAGGTCGATGTTGGAATCTCTCGATATGGCTCACAAGATTT
CCCCAAACGCCATTGCCTTAGCATCAAAATGGCGGAAGATCAACGACTCA
GAAGACATCTGCTCACTTGTAGATCAACTACGGGGTAATAGTTCGCAGTT
TTTGCGTCCTGGCTATTTCGTTGCTGAAGGTTTACCTTCTGCTGCTCTCT
TCTTAAAAGATGAGCTTTCAAAGCGAGAAGAGCGATCAGCATGGCGACTG
GACTGTGATCAACGTCTATTAGGGTTACTGTTTATACGGCCTCATGTGCT
TGAACGATCGTCAAATGCACCCCCAAACATTGTCTCCGCTTGCGTAGATG
ATACCTATTCTGCTGAAAGTGCCGTAGTGTTTGCTGGAAACTTACTGAAG
AAGGCTAGCTTCCAAGTATCGTTTGATGTTGGCATAAACGCGGAGAAGAT
GGAAAGCTCACTGTTACTCTCAAGTTTGAAAGCTACACACTTCATTGTAT
ACAAGCACTCAAAATGA

protein sequence of Ggra8909.t1

>Ggra8909.t1 ID=Ggra8909.t1|Name=Ggra8909.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=339bp
MTVPQLRCNGATFKFRRYHDATDRDQVKRICANLYNSQDYVPRLLPAYAS
SSRCEPYVLEGPTGVAAFIVARHRQVLADHNAPFYKEIFIEALRVREDLQ
GVGVATNILIEATNAVRCALGKQPDLHIFSTTIPENKAMTQVFRKAGWKP
LSNMIIWPKEDEIRSLQNTGRSMLESLDMAHKISPNAIALASKWRKINDS
EDICSLVDQLRGNSSQFLRPGYFVAEGLPSAALFLKDELSKREERSAWRL
DCDQRLLGLLFIRPHVLERSSNAPPNIVSACVDDTYSAESAVVFAGNLLK
KASFQVSFDVGINAEKMESSLLLSSLKATHFIVYKHSK*

mRNA from alignment at tig00000860_pilon:782850..783866+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8909.t1 ID=Ggra8909.t1|Name=Ggra8909.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000860_pilon:782850..783866+ (Gracilaria gracilis GNS1m male)
ATGACTGTACCACAATTACGTTGCAATGGGGCGACCTTTAAATTCCGACG
ATACCACGATGCAACCGACCGAGACCAAGTCAAGCGAATTTGCGCCAATC
TTTACAACTCGCAAGATTACGTGCCTCGTCTTTTGCCGGCATATGCTTCT
TCCAGCCGATGTGAACCTTATGTCCTAGAAGGTCCCACTGGTGTAGCTGC
CTTCATCGTTGCGAGACATAGACAAGTCCTTGCGGACCACAATGCTCCCT
TCTACAAAGAAATCTTTATTGAAGCTTTGAGAGTGCGAGAAGATTTACAA
GGGGTTGGAGTGGCTACAAATATCCTGATAGAGGCAACAAACGCTGTCAG
ATGTGCTCTTGGCAAACAACCTGACCTACACATTTTCTCTACTACCATCC
CGGAAAACAAAGCCATGACTCAAGTTTTCCGCAAAGCTGGATGGAAACCT
CTGAGCAACATGATCATCTGGCCGAAAGAGGATGAAATTCGCAGCCTCCA
AAACACTGGCAGGTCGATGTTGGAATCTCTCGATATGGCTCACAAGATTT
CCCCAAACGCCATTGCCTTAGCATCAAAATGGCGGAAGATCAACGACTCA
GAAGACATCTGCTCACTTGTAGATCAACTACGGGGTAATAGTTCGCAGTT
TTTGCGTCCTGGCTATTTCGTTGCTGAAGGTTTACCTTCTGCTGCTCTCT
TCTTAAAAGATGAGCTTTCAAAGCGAGAAGAGCGATCAGCATGGCGACTG
GACTGTGATCAACGTCTATTAGGGTTACTGTTTATACGGCCTCATGTGCT
TGAACGATCGTCAAATGCACCCCCAAACATTGTCTCCGCTTGCGTAGATG
ATACCTATTCTGCTGAAAGTGCCGTAGTGTTTGCTGGAAACTTACTGAAG
AAGGCTAGCTTCCAAGTATCGTTTGATGTTGGCATAAACGCGGAGAAGAT
GGAAAGCTCACTGTTACTCTCAAGTTTGAAAGCTACACACTTCATTGTAT
ACAAGCACTCAAAATGA

Coding sequence (CDS) from alignment at tig00000860_pilon:782850..783866+

>Ggra8909.t1 ID=Ggra8909.t1|Name=Ggra8909.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1017bp|location=Sequence derived from alignment at tig00000860_pilon:782850..783866+ (Gracilaria gracilis GNS1m male)
ATGACTGTACCACAATTACGTTGCAATGGGGCGACCTTTAAATTCCGACG
ATACCACGATGCAACCGACCGAGACCAAGTCAAGCGAATTTGCGCCAATC
TTTACAACTCGCAAGATTACGTGCCTCGTCTTTTGCCGGCATATGCTTCT
TCCAGCCGATGTGAACCTTATGTCCTAGAAGGTCCCACTGGTGTAGCTGC
CTTCATCGTTGCGAGACATAGACAAGTCCTTGCGGACCACAATGCTCCCT
TCTACAAAGAAATCTTTATTGAAGCTTTGAGAGTGCGAGAAGATTTACAA
GGGGTTGGAGTGGCTACAAATATCCTGATAGAGGCAACAAACGCTGTCAG
ATGTGCTCTTGGCAAACAACCTGACCTACACATTTTCTCTACTACCATCC
CGGAAAACAAAGCCATGACTCAAGTTTTCCGCAAAGCTGGATGGAAACCT
CTGAGCAACATGATCATCTGGCCGAAAGAGGATGAAATTCGCAGCCTCCA
AAACACTGGCAGGTCGATGTTGGAATCTCTCGATATGGCTCACAAGATTT
CCCCAAACGCCATTGCCTTAGCATCAAAATGGCGGAAGATCAACGACTCA
GAAGACATCTGCTCACTTGTAGATCAACTACGGGGTAATAGTTCGCAGTT
TTTGCGTCCTGGCTATTTCGTTGCTGAAGGTTTACCTTCTGCTGCTCTCT
TCTTAAAAGATGAGCTTTCAAAGCGAGAAGAGCGATCAGCATGGCGACTG
GACTGTGATCAACGTCTATTAGGGTTACTGTTTATACGGCCTCATGTGCT
TGAACGATCGTCAAATGCACCCCCAAACATTGTCTCCGCTTGCGTAGATG
ATACCTATTCTGCTGAAAGTGCCGTAGTGTTTGCTGGAAACTTACTGAAG
AAGGCTAGCTTCCAAGTATCGTTTGATGTTGGCATAAACGCGGAGAAGAT
GGAAAGCTCACTGTTACTCTCAAGTTTGAAAGCTACACACTTCATTGTAT
ACAAGCACTCAAAATGA