Ggra8908.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8908.t1
Unique Name	Ggra8908.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	608

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:774015..775838 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMR346CT
PFAMs	Alpha-amylase,Alpha-amylase_C,Glyco_transf_4,Glycos_transf_1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03857
KEGG Reaction	R05916
KEGG Pathway	ko00563,ko01100,map00563,map01100
KEGG Module	M00065
Evalue	2.4e-200
EggNOG OGs	COG0438@1\|root,KOG1111@2759\|Eukaryota
EC	2.4.1.198
Description	phosphatidylinositol N-acetylglucosaminyltransferase activity
COG category	M
CAZy	GT4
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8908	Ggra8908	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 774015..775838 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8908.t1.stop1	Ggra8908.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 774015..774017 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8908.t1.CDS1	Ggra8908.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 774015..775838 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8908.t1.exon1	Ggra8908.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 774015..775838 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8908.t1.start1	Ggra8908.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 775836..775838 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8908.t1	Ggra8908.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 774015..775838 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:774015..775838-
coding sequence from alignment at tig00000860_pilon:774015..775838-

mRNA sequence

>Ggra8908.t1 ID=Ggra8908.t1|Name=Ggra8908.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=608bp
MAPPRNSATALSKLESAQVLENNASRTVLSAPSVPKQSTTTSTASKPSAT
KPAATKPTATKPIATKPTATKPTATKPTATKPTATKPTATKPTATKPTAT
KPTATKPTVTKPPATKPSEATAHDRVKLALQQTDIPVYEQKSPYAFDDVH
DALLGVEGAPEQKMANRRFKIALFAWESLHSIAVGGVAPHLTELAAGLER
RGHEVHAYVRTGAGQPSYERIDGVHLHRISFELSPDFVQEVTNMCNAMVH
FMLETEAFMNAQFDVCHAHDWLAASALINIKRNHNRRCVFTVHSTEFGRC
GNNIYGGQSERIRNIEAEAIGLADKVIGVSGVLCDEIKAHYSFDWDKLRC
VYNGINCLRYDGNLWDPAEVRSKYGVGPMDPMVLFVGRMATQKGPDILVE
AIPNILVTRPDAKFVLVGDGYMKTGLIARVHDLGVAGSVCFTGSMSGQSL
VDLFKATDLVAIPSRNEPFGIVTLEAWASNKPVVVTKSGGPREFVWHDND
GYLVDTSAEGIAWGICNAFNNFEHMRYMGERGRVKAAYQFSWDNIAENTN
NVYDELLPDHPGHAVLKDATAESVVGAVDSKDTIKLAAKTAPVAGVTTET
VQRVANV*

spliced messenger RNA

>Ggra8908.t1 ID=Ggra8908.t1|Name=Ggra8908.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1824bp|location=Sequence derived from alignment at tig00000860_pilon:774015..775838- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCCGCCACGCAATTCTGCTACTGCTTTGTCGAAGCTTGAAAGCGC
CCAGGTGCTTGAGAACAATGCGTCGCGTACCGTTCTTTCCGCACCGTCTG
TGCCAAAGCAGTCTACAACAACGTCAACTGCATCAAAGCCGTCTGCAACA
AAGCCCGCGGCGACAAAGCCCACGGCGACAAAGCCTATAGCGACAAAGCC
CACCGCTACCAAGCCCACCGCTACCAAGCCCACCGCTACCAAGCCCACCG
CTACCAAGCCAACCGCTACCAAGCCAACCGCTACCAAGCCAACCGCTACC
AAGCCAACCGCTACTAAGCCCACCGTTACTAAGCCCCCCGCCACGAAGCC
GTCTGAAGCTACTGCCCACGACAGAGTTAAACTCGCTTTGCAACAAACCG
ATATTCCAGTGTATGAGCAAAAGTCTCCATATGCCTTCGATGATGTACAC
GACGCACTTCTCGGCGTGGAAGGCGCCCCGGAGCAGAAGATGGCAAATAG
GCGATTTAAGATTGCCCTGTTTGCTTGGGAGTCTCTACATTCGATTGCCG
TTGGTGGCGTTGCGCCCCACTTGACCGAGCTGGCCGCCGGTCTGGAACGT
CGTGGACATGAAGTGCACGCTTATGTTCGGACTGGAGCTGGTCAACCGTC
GTACGAACGTATTGATGGTGTTCATTTGCACCGCATATCGTTTGAACTTT
CTCCGGATTTTGTGCAGGAGGTGACAAACATGTGTAATGCCATGGTGCAC
TTCATGTTGGAGACGGAGGCCTTTATGAACGCCCAGTTTGATGTTTGTCA
TGCACATGATTGGCTTGCTGCTTCTGCTCTTATTAACATTAAGAGGAATC
ATAATCGTCGATGTGTGTTCACTGTGCATTCTACAGAGTTTGGACGATGC
GGTAATAATATTTACGGCGGACAATCTGAACGAATTCGCAACATTGAGGC
GGAGGCTATCGGCCTTGCGGACAAGGTGATTGGCGTTTCAGGCGTGTTGT
GTGATGAAATCAAGGCACATTATAGTTTTGATTGGGATAAGCTTCGATGT
GTTTACAACGGCATCAATTGCTTGCGATATGATGGTAATCTATGGGACCC
TGCAGAGGTCCGTTCCAAGTATGGTGTGGGTCCCATGGATCCTATGGTTT
TGTTCGTGGGTCGAATGGCAACGCAGAAAGGACCTGATATTCTTGTTGAA
GCTATTCCAAACATTCTTGTAACTCGCCCTGACGCGAAGTTCGTGTTGGT
TGGAGACGGTTACATGAAAACCGGTTTAATCGCACGAGTACATGATTTGG
GCGTTGCTGGGTCTGTTTGTTTCACTGGAAGTATGAGTGGTCAGAGCCTT
GTTGATCTGTTCAAGGCTACTGACTTGGTTGCTATACCCAGCCGCAATGA
ACCATTTGGAATCGTTACATTGGAGGCTTGGGCTTCAAACAAACCTGTAG
TTGTGACGAAAAGTGGCGGACCGCGAGAGTTTGTGTGGCACGACAATGAT
GGGTACCTGGTTGATACAAGCGCAGAAGGTATAGCGTGGGGTATTTGCAA
CGCGTTTAATAACTTTGAGCATATGCGCTATATGGGGGAGAGAGGCCGTG
TAAAGGCGGCTTATCAGTTCTCTTGGGATAATATTGCAGAGAATACGAAC
AACGTGTACGATGAGCTCTTGCCTGATCACCCTGGGCACGCCGTCCTCAA
AGATGCGACGGCTGAAAGTGTGGTTGGCGCTGTGGACTCCAAGGACACCA
TTAAGCTTGCAGCGAAGACCGCTCCTGTGGCGGGAGTGACAACGGAGACA
GTGCAGCGTGTTGCCAATGTGTAG

protein sequence of Ggra8908.t1

>Ggra8908.t1 ID=Ggra8908.t1|Name=Ggra8908.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=608bp
MAPPRNSATALSKLESAQVLENNASRTVLSAPSVPKQSTTTSTASKPSAT
KPAATKPTATKPIATKPTATKPTATKPTATKPTATKPTATKPTATKPTAT
KPTATKPTVTKPPATKPSEATAHDRVKLALQQTDIPVYEQKSPYAFDDVH
DALLGVEGAPEQKMANRRFKIALFAWESLHSIAVGGVAPHLTELAAGLER
RGHEVHAYVRTGAGQPSYERIDGVHLHRISFELSPDFVQEVTNMCNAMVH
FMLETEAFMNAQFDVCHAHDWLAASALINIKRNHNRRCVFTVHSTEFGRC
GNNIYGGQSERIRNIEAEAIGLADKVIGVSGVLCDEIKAHYSFDWDKLRC
VYNGINCLRYDGNLWDPAEVRSKYGVGPMDPMVLFVGRMATQKGPDILVE
AIPNILVTRPDAKFVLVGDGYMKTGLIARVHDLGVAGSVCFTGSMSGQSL
VDLFKATDLVAIPSRNEPFGIVTLEAWASNKPVVVTKSGGPREFVWHDND
GYLVDTSAEGIAWGICNAFNNFEHMRYMGERGRVKAAYQFSWDNIAENTN
NVYDELLPDHPGHAVLKDATAESVVGAVDSKDTIKLAAKTAPVAGVTTET
VQRVANV*

mRNA from alignment at tig00000860_pilon:774015..775838-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8908.t1 ID=Ggra8908.t1|Name=Ggra8908.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1824bp|location=Sequence derived from alignment at tig00000860_pilon:774015..775838- (Gracilaria gracilis GNS1m male)
ATGGCCCCGCCACGCAATTCTGCTACTGCTTTGTCGAAGCTTGAAAGCGC
CCAGGTGCTTGAGAACAATGCGTCGCGTACCGTTCTTTCCGCACCGTCTG
TGCCAAAGCAGTCTACAACAACGTCAACTGCATCAAAGCCGTCTGCAACA
AAGCCCGCGGCGACAAAGCCCACGGCGACAAAGCCTATAGCGACAAAGCC
CACCGCTACCAAGCCCACCGCTACCAAGCCCACCGCTACCAAGCCCACCG
CTACCAAGCCAACCGCTACCAAGCCAACCGCTACCAAGCCAACCGCTACC
AAGCCAACCGCTACTAAGCCCACCGTTACTAAGCCCCCCGCCACGAAGCC
GTCTGAAGCTACTGCCCACGACAGAGTTAAACTCGCTTTGCAACAAACCG
ATATTCCAGTGTATGAGCAAAAGTCTCCATATGCCTTCGATGATGTACAC
GACGCACTTCTCGGCGTGGAAGGCGCCCCGGAGCAGAAGATGGCAAATAG
GCGATTTAAGATTGCCCTGTTTGCTTGGGAGTCTCTACATTCGATTGCCG
TTGGTGGCGTTGCGCCCCACTTGACCGAGCTGGCCGCCGGTCTGGAACGT
CGTGGACATGAAGTGCACGCTTATGTTCGGACTGGAGCTGGTCAACCGTC
GTACGAACGTATTGATGGTGTTCATTTGCACCGCATATCGTTTGAACTTT
CTCCGGATTTTGTGCAGGAGGTGACAAACATGTGTAATGCCATGGTGCAC
TTCATGTTGGAGACGGAGGCCTTTATGAACGCCCAGTTTGATGTTTGTCA
TGCACATGATTGGCTTGCTGCTTCTGCTCTTATTAACATTAAGAGGAATC
ATAATCGTCGATGTGTGTTCACTGTGCATTCTACAGAGTTTGGACGATGC
GGTAATAATATTTACGGCGGACAATCTGAACGAATTCGCAACATTGAGGC
GGAGGCTATCGGCCTTGCGGACAAGGTGATTGGCGTTTCAGGCGTGTTGT
GTGATGAAATCAAGGCACATTATAGTTTTGATTGGGATAAGCTTCGATGT
GTTTACAACGGCATCAATTGCTTGCGATATGATGGTAATCTATGGGACCC
TGCAGAGGTCCGTTCCAAGTATGGTGTGGGTCCCATGGATCCTATGGTTT
TGTTCGTGGGTCGAATGGCAACGCAGAAAGGACCTGATATTCTTGTTGAA
GCTATTCCAAACATTCTTGTAACTCGCCCTGACGCGAAGTTCGTGTTGGT
TGGAGACGGTTACATGAAAACCGGTTTAATCGCACGAGTACATGATTTGG
GCGTTGCTGGGTCTGTTTGTTTCACTGGAAGTATGAGTGGTCAGAGCCTT
GTTGATCTGTTCAAGGCTACTGACTTGGTTGCTATACCCAGCCGCAATGA
ACCATTTGGAATCGTTACATTGGAGGCTTGGGCTTCAAACAAACCTGTAG
TTGTGACGAAAAGTGGCGGACCGCGAGAGTTTGTGTGGCACGACAATGAT
GGGTACCTGGTTGATACAAGCGCAGAAGGTATAGCGTGGGGTATTTGCAA
CGCGTTTAATAACTTTGAGCATATGCGCTATATGGGGGAGAGAGGCCGTG
TAAAGGCGGCTTATCAGTTCTCTTGGGATAATATTGCAGAGAATACGAAC
AACGTGTACGATGAGCTCTTGCCTGATCACCCTGGGCACGCCGTCCTCAA
AGATGCGACGGCTGAAAGTGTGGTTGGCGCTGTGGACTCCAAGGACACCA
TTAAGCTTGCAGCGAAGACCGCTCCTGTGGCGGGAGTGACAACGGAGACA
GTGCAGCGTGTTGCCAATGTGTAG

Coding sequence (CDS) from alignment at tig00000860_pilon:774015..775838-

>Ggra8908.t1 ID=Ggra8908.t1|Name=Ggra8908.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1824bp|location=Sequence derived from alignment at tig00000860_pilon:774015..775838- (Gracilaria gracilis GNS1m male)
ATGGCCCCGCCACGCAATTCTGCTACTGCTTTGTCGAAGCTTGAAAGCGC
CCAGGTGCTTGAGAACAATGCGTCGCGTACCGTTCTTTCCGCACCGTCTG
TGCCAAAGCAGTCTACAACAACGTCAACTGCATCAAAGCCGTCTGCAACA
AAGCCCGCGGCGACAAAGCCCACGGCGACAAAGCCTATAGCGACAAAGCC
CACCGCTACCAAGCCCACCGCTACCAAGCCCACCGCTACCAAGCCCACCG
CTACCAAGCCAACCGCTACCAAGCCAACCGCTACCAAGCCAACCGCTACC
AAGCCAACCGCTACTAAGCCCACCGTTACTAAGCCCCCCGCCACGAAGCC
GTCTGAAGCTACTGCCCACGACAGAGTTAAACTCGCTTTGCAACAAACCG
ATATTCCAGTGTATGAGCAAAAGTCTCCATATGCCTTCGATGATGTACAC
GACGCACTTCTCGGCGTGGAAGGCGCCCCGGAGCAGAAGATGGCAAATAG
GCGATTTAAGATTGCCCTGTTTGCTTGGGAGTCTCTACATTCGATTGCCG
TTGGTGGCGTTGCGCCCCACTTGACCGAGCTGGCCGCCGGTCTGGAACGT
CGTGGACATGAAGTGCACGCTTATGTTCGGACTGGAGCTGGTCAACCGTC
GTACGAACGTATTGATGGTGTTCATTTGCACCGCATATCGTTTGAACTTT
CTCCGGATTTTGTGCAGGAGGTGACAAACATGTGTAATGCCATGGTGCAC
TTCATGTTGGAGACGGAGGCCTTTATGAACGCCCAGTTTGATGTTTGTCA
TGCACATGATTGGCTTGCTGCTTCTGCTCTTATTAACATTAAGAGGAATC
ATAATCGTCGATGTGTGTTCACTGTGCATTCTACAGAGTTTGGACGATGC
GGTAATAATATTTACGGCGGACAATCTGAACGAATTCGCAACATTGAGGC
GGAGGCTATCGGCCTTGCGGACAAGGTGATTGGCGTTTCAGGCGTGTTGT
GTGATGAAATCAAGGCACATTATAGTTTTGATTGGGATAAGCTTCGATGT
GTTTACAACGGCATCAATTGCTTGCGATATGATGGTAATCTATGGGACCC
TGCAGAGGTCCGTTCCAAGTATGGTGTGGGTCCCATGGATCCTATGGTTT
TGTTCGTGGGTCGAATGGCAACGCAGAAAGGACCTGATATTCTTGTTGAA
GCTATTCCAAACATTCTTGTAACTCGCCCTGACGCGAAGTTCGTGTTGGT
TGGAGACGGTTACATGAAAACCGGTTTAATCGCACGAGTACATGATTTGG
GCGTTGCTGGGTCTGTTTGTTTCACTGGAAGTATGAGTGGTCAGAGCCTT
GTTGATCTGTTCAAGGCTACTGACTTGGTTGCTATACCCAGCCGCAATGA
ACCATTTGGAATCGTTACATTGGAGGCTTGGGCTTCAAACAAACCTGTAG
TTGTGACGAAAAGTGGCGGACCGCGAGAGTTTGTGTGGCACGACAATGAT
GGGTACCTGGTTGATACAAGCGCAGAAGGTATAGCGTGGGGTATTTGCAA
CGCGTTTAATAACTTTGAGCATATGCGCTATATGGGGGAGAGAGGCCGTG
TAAAGGCGGCTTATCAGTTCTCTTGGGATAATATTGCAGAGAATACGAAC
AACGTGTACGATGAGCTCTTGCCTGATCACCCTGGGCACGCCGTCCTCAA
AGATGCGACGGCTGAAAGTGTGGTTGGCGCTGTGGACTCCAAGGACACCA
TTAAGCTTGCAGCGAAGACCGCTCCTGTGGCGGGAGTGACAACGGAGACA
GTGCAGCGTGTTGCCAATGTGTAG