Ggra8906.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8906.t1
Unique NameGgra8906.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length382
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:768911..770056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5811.TGME49_045610
Max annot lvl5794|Apicomplexa
Evalue3.4e-43
EggNOG OGs2B5H6@1|root,2S0J1@2759|Eukaryota,3YBH5@5794|Apicomplexa,3YJM9@5796|Coccidia,3YQTB@5809|Sarcocystidae
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8906Ggra8906Gracilaria gracilis GNS1m malegenetig00000860_pilon 768911..770056 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8906.t1.start1Ggra8906.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 768911..768913 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8906.t1.CDS1Ggra8906.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 768911..770056 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8906.t1.exon1Ggra8906.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 768911..770056 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8906.t1.stop1Ggra8906.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 770054..770056 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8906.t1Ggra8906.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 768911..770056 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8906.t1 ID=Ggra8906.t1|Name=Ggra8906.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=382bp
MQRERNPLLTSTNMHPDMRRTNHSLLRTCCLLGIGWLGGMLMSSRSNMDM
DNQVRIIHQKEASGHQMDCSSKKLKQHTLKLVHNQAYANLFGQSRLRVFE
ASDIAGHPNGDGLYTVFDNSYMISRTTQTLGNFKSNMTLKQDALLNWEGE
TTMRSNFEFIAYNESSNSYIVGQEAVEMEDGSIRAQTMDIRFSDSQVIVG
EKCDCDFKFTHQNKGFEGALVITSTTSRSLLLALCEGNYCRGGKKGRRSG
NGRIVVMERTYTLGKCTFRAINIVALPRSIDFQDYSAMAVWNRSTIAITS
QENAAVYIGKLSATADSVQISDGRIYDFPRSDDCEVQFCNVEGAYFLEEK
LLLLASDSMKGKKQPFGCRRRDESLHVMVIP*
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spliced messenger RNA

>Ggra8906.t1 ID=Ggra8906.t1|Name=Ggra8906.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00000860_pilon:768911..770056+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACGAGAACGCAATCCACTTCTGACTTCTACGAATATGCATCCAGA
TATGCGGCGAACAAACCATTCGTTACTCCGGACATGTTGTCTATTGGGAA
TTGGCTGGCTTGGAGGTATGTTAATGTCCTCTCGCAGCAACATGGATATG
GACAATCAGGTTCGAATTATTCATCAAAAAGAAGCTAGCGGTCATCAAAT
GGATTGCTCCTCAAAGAAGTTGAAGCAACACACTTTGAAACTGGTGCACA
ACCAAGCATATGCAAATCTGTTTGGACAATCACGACTTAGAGTATTCGAA
GCTTCCGATATAGCAGGGCACCCAAACGGCGATGGTCTATACACAGTTTT
CGACAATTCATATATGATCTCTCGTACAACTCAGACATTAGGAAACTTCA
AGAGCAATATGACGCTGAAACAAGACGCTCTTTTGAATTGGGAGGGTGAG
ACCACAATGCGCAGTAACTTCGAATTCATCGCGTACAACGAAAGTTCTAA
CTCGTACATAGTGGGCCAGGAAGCCGTAGAAATGGAGGACGGAAGCATTC
GTGCGCAGACAATGGACATACGTTTCAGCGACAGCCAGGTAATCGTGGGC
GAAAAGTGCGACTGCGACTTCAAATTCACGCACCAAAACAAGGGATTTGA
AGGCGCATTGGTGATCACGAGCACGACATCTCGATCGCTCCTACTAGCGC
TGTGCGAGGGGAACTATTGCAGAGGAGGAAAGAAGGGAAGGAGAAGCGGT
AATGGACGTATCGTAGTAATGGAGCGCACATATACGCTAGGCAAGTGTAC
GTTTCGGGCGATCAACATAGTGGCGTTACCGCGCTCAATCGACTTCCAAG
ACTACTCGGCAATGGCGGTGTGGAATAGATCAACGATAGCGATCACCTCG
CAGGAAAACGCCGCCGTGTACATCGGGAAACTGTCAGCCACGGCAGACAG
TGTGCAGATCAGCGACGGAAGGATTTACGACTTCCCTCGCTCGGACGACT
GCGAGGTGCAATTCTGCAACGTCGAAGGCGCATACTTTCTGGAGGAGAAG
CTGCTGTTGCTGGCAAGCGACTCGATGAAGGGCAAGAAGCAGCCGTTCGG
CTGCCGTCGTCGAGACGAGTCGCTGCACGTGATGGTGATCCCGTAG
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protein sequence of Ggra8906.t1

>Ggra8906.t1 ID=Ggra8906.t1|Name=Ggra8906.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=382bp
MQRERNPLLTSTNMHPDMRRTNHSLLRTCCLLGIGWLGGMLMSSRSNMDM
DNQVRIIHQKEASGHQMDCSSKKLKQHTLKLVHNQAYANLFGQSRLRVFE
ASDIAGHPNGDGLYTVFDNSYMISRTTQTLGNFKSNMTLKQDALLNWEGE
TTMRSNFEFIAYNESSNSYIVGQEAVEMEDGSIRAQTMDIRFSDSQVIVG
EKCDCDFKFTHQNKGFEGALVITSTTSRSLLLALCEGNYCRGGKKGRRSG
NGRIVVMERTYTLGKCTFRAINIVALPRSIDFQDYSAMAVWNRSTIAITS
QENAAVYIGKLSATADSVQISDGRIYDFPRSDDCEVQFCNVEGAYFLEEK
LLLLASDSMKGKKQPFGCRRRDESLHVMVIP*
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mRNA from alignment at tig00000860_pilon:768911..770056+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8906.t1 ID=Ggra8906.t1|Name=Ggra8906.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00000860_pilon:768911..770056+ (Gracilaria gracilis GNS1m male)
ATGCAACGAGAACGCAATCCACTTCTGACTTCTACGAATATGCATCCAGA
TATGCGGCGAACAAACCATTCGTTACTCCGGACATGTTGTCTATTGGGAA
TTGGCTGGCTTGGAGGTATGTTAATGTCCTCTCGCAGCAACATGGATATG
GACAATCAGGTTCGAATTATTCATCAAAAAGAAGCTAGCGGTCATCAAAT
GGATTGCTCCTCAAAGAAGTTGAAGCAACACACTTTGAAACTGGTGCACA
ACCAAGCATATGCAAATCTGTTTGGACAATCACGACTTAGAGTATTCGAA
GCTTCCGATATAGCAGGGCACCCAAACGGCGATGGTCTATACACAGTTTT
CGACAATTCATATATGATCTCTCGTACAACTCAGACATTAGGAAACTTCA
AGAGCAATATGACGCTGAAACAAGACGCTCTTTTGAATTGGGAGGGTGAG
ACCACAATGCGCAGTAACTTCGAATTCATCGCGTACAACGAAAGTTCTAA
CTCGTACATAGTGGGCCAGGAAGCCGTAGAAATGGAGGACGGAAGCATTC
GTGCGCAGACAATGGACATACGTTTCAGCGACAGCCAGGTAATCGTGGGC
GAAAAGTGCGACTGCGACTTCAAATTCACGCACCAAAACAAGGGATTTGA
AGGCGCATTGGTGATCACGAGCACGACATCTCGATCGCTCCTACTAGCGC
TGTGCGAGGGGAACTATTGCAGAGGAGGAAAGAAGGGAAGGAGAAGCGGT
AATGGACGTATCGTAGTAATGGAGCGCACATATACGCTAGGCAAGTGTAC
GTTTCGGGCGATCAACATAGTGGCGTTACCGCGCTCAATCGACTTCCAAG
ACTACTCGGCAATGGCGGTGTGGAATAGATCAACGATAGCGATCACCTCG
CAGGAAAACGCCGCCGTGTACATCGGGAAACTGTCAGCCACGGCAGACAG
TGTGCAGATCAGCGACGGAAGGATTTACGACTTCCCTCGCTCGGACGACT
GCGAGGTGCAATTCTGCAACGTCGAAGGCGCATACTTTCTGGAGGAGAAG
CTGCTGTTGCTGGCAAGCGACTCGATGAAGGGCAAGAAGCAGCCGTTCGG
CTGCCGTCGTCGAGACGAGTCGCTGCACGTGATGGTGATCCCGTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:768911..770056+

>Ggra8906.t1 ID=Ggra8906.t1|Name=Ggra8906.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1146bp|location=Sequence derived from alignment at tig00000860_pilon:768911..770056+ (Gracilaria gracilis GNS1m male)
ATGCAACGAGAACGCAATCCACTTCTGACTTCTACGAATATGCATCCAGA
TATGCGGCGAACAAACCATTCGTTACTCCGGACATGTTGTCTATTGGGAA
TTGGCTGGCTTGGAGGTATGTTAATGTCCTCTCGCAGCAACATGGATATG
GACAATCAGGTTCGAATTATTCATCAAAAAGAAGCTAGCGGTCATCAAAT
GGATTGCTCCTCAAAGAAGTTGAAGCAACACACTTTGAAACTGGTGCACA
ACCAAGCATATGCAAATCTGTTTGGACAATCACGACTTAGAGTATTCGAA
GCTTCCGATATAGCAGGGCACCCAAACGGCGATGGTCTATACACAGTTTT
CGACAATTCATATATGATCTCTCGTACAACTCAGACATTAGGAAACTTCA
AGAGCAATATGACGCTGAAACAAGACGCTCTTTTGAATTGGGAGGGTGAG
ACCACAATGCGCAGTAACTTCGAATTCATCGCGTACAACGAAAGTTCTAA
CTCGTACATAGTGGGCCAGGAAGCCGTAGAAATGGAGGACGGAAGCATTC
GTGCGCAGACAATGGACATACGTTTCAGCGACAGCCAGGTAATCGTGGGC
GAAAAGTGCGACTGCGACTTCAAATTCACGCACCAAAACAAGGGATTTGA
AGGCGCATTGGTGATCACGAGCACGACATCTCGATCGCTCCTACTAGCGC
TGTGCGAGGGGAACTATTGCAGAGGAGGAAAGAAGGGAAGGAGAAGCGGT
AATGGACGTATCGTAGTAATGGAGCGCACATATACGCTAGGCAAGTGTAC
GTTTCGGGCGATCAACATAGTGGCGTTACCGCGCTCAATCGACTTCCAAG
ACTACTCGGCAATGGCGGTGTGGAATAGATCAACGATAGCGATCACCTCG
CAGGAAAACGCCGCCGTGTACATCGGGAAACTGTCAGCCACGGCAGACAG
TGTGCAGATCAGCGACGGAAGGATTTACGACTTCCCTCGCTCGGACGACT
GCGAGGTGCAATTCTGCAACGTCGAAGGCGCATACTTTCTGGAGGAGAAG
CTGCTGTTGCTGGCAAGCGACTCGATGAAGGGCAAGAAGCAGCCGTTCGG
CTGCCGTCGTCGAGACGAGTCGCTGCACGTGATGGTGATCCCGTAG
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