Ggra8905.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8905.t1
Unique NameGgra8905.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length208
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:766059..766682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_143542
PFAMsSulfotransfer_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00007,RC00128
KEGG koko:K01014
KEGG ReactionR01242
KEGG Pathwayko05204,map05204
Evalue7.59e-08
EggNOG OGsKOG1584@1|root,KOG1584@2759|Eukaryota
EC2.8.2.1
Descriptionsulfotransferase activity
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8905Ggra8905Gracilaria gracilis GNS1m malegenetig00000860_pilon 766059..766682 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8905.t1.start1Ggra8905.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 766059..766061 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8905.t1.CDS1Ggra8905.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 766059..766682 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8905.t1.exon1Ggra8905.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 766059..766682 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8905.t1.stop1Ggra8905.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 766680..766682 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8905.t1Ggra8905.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 766059..766682 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8905.t1 ID=Ggra8905.t1|Name=Ggra8905.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=208bp
MCWKSHADASHFSGWDVKFLYGVRNPIHATRSFLDFVYNWLLEDPPQSPL
VLEKVYAKFVERFLLTDPDRQIADWFTHTQSFLQLDGEVLFLVFEDVIRD
IGGTVRQIARFLDIEMSDEQVEYVIRKCDRKSMANDLRFNDLSISRLMGW
KIFEGRRVREEHDGLFKRIKLDPVVEQKVWKKFEKVFGMKSHAELVAELR
RRNSLLP*
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spliced messenger RNA

>Ggra8905.t1 ID=Ggra8905.t1|Name=Ggra8905.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=624bp|location=Sequence derived from alignment at tig00000860_pilon:766059..766682+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCTGGAAGTCTCATGCTGACGCATCGCACTTCTCAGGATGGGATGT
GAAGTTCTTGTACGGTGTCCGGAATCCTATTCATGCCACAAGGAGTTTTC
TCGACTTCGTGTACAACTGGTTGCTAGAAGACCCACCCCAGTCTCCTCTT
GTACTAGAGAAAGTATATGCTAAGTTCGTGGAGCGCTTTTTGCTCACTGA
CCCCGATAGACAGATAGCGGACTGGTTCACTCATACTCAATCTTTTCTCC
AGTTAGATGGAGAAGTGCTCTTCTTAGTTTTCGAAGACGTCATTAGAGAT
ATTGGTGGAACCGTTCGACAAATAGCTCGTTTTCTTGATATAGAAATGAG
TGACGAACAAGTGGAATATGTTATACGAAAGTGCGATAGGAAATCTATGG
CGAATGATCTGCGATTCAATGATCTCTCAATTTCCAGGTTGATGGGCTGG
AAAATATTCGAAGGGAGAAGAGTAAGGGAAGAACACGACGGCCTATTCAA
ACGGATAAAACTAGATCCTGTCGTCGAGCAGAAGGTGTGGAAGAAGTTCG
AAAAAGTCTTCGGTATGAAAAGCCACGCTGAGTTAGTGGCTGAGTTGCGA
AGGAGAAATTCTTTGCTCCCTTAG
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protein sequence of Ggra8905.t1

>Ggra8905.t1 ID=Ggra8905.t1|Name=Ggra8905.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=208bp
MCWKSHADASHFSGWDVKFLYGVRNPIHATRSFLDFVYNWLLEDPPQSPL
VLEKVYAKFVERFLLTDPDRQIADWFTHTQSFLQLDGEVLFLVFEDVIRD
IGGTVRQIARFLDIEMSDEQVEYVIRKCDRKSMANDLRFNDLSISRLMGW
KIFEGRRVREEHDGLFKRIKLDPVVEQKVWKKFEKVFGMKSHAELVAELR
RRNSLLP*
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mRNA from alignment at tig00000860_pilon:766059..766682+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8905.t1 ID=Ggra8905.t1|Name=Ggra8905.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=624bp|location=Sequence derived from alignment at tig00000860_pilon:766059..766682+ (Gracilaria gracilis GNS1m male)
ATGTGCTGGAAGTCTCATGCTGACGCATCGCACTTCTCAGGATGGGATGT
GAAGTTCTTGTACGGTGTCCGGAATCCTATTCATGCCACAAGGAGTTTTC
TCGACTTCGTGTACAACTGGTTGCTAGAAGACCCACCCCAGTCTCCTCTT
GTACTAGAGAAAGTATATGCTAAGTTCGTGGAGCGCTTTTTGCTCACTGA
CCCCGATAGACAGATAGCGGACTGGTTCACTCATACTCAATCTTTTCTCC
AGTTAGATGGAGAAGTGCTCTTCTTAGTTTTCGAAGACGTCATTAGAGAT
ATTGGTGGAACCGTTCGACAAATAGCTCGTTTTCTTGATATAGAAATGAG
TGACGAACAAGTGGAATATGTTATACGAAAGTGCGATAGGAAATCTATGG
CGAATGATCTGCGATTCAATGATCTCTCAATTTCCAGGTTGATGGGCTGG
AAAATATTCGAAGGGAGAAGAGTAAGGGAAGAACACGACGGCCTATTCAA
ACGGATAAAACTAGATCCTGTCGTCGAGCAGAAGGTGTGGAAGAAGTTCG
AAAAAGTCTTCGGTATGAAAAGCCACGCTGAGTTAGTGGCTGAGTTGCGA
AGGAGAAATTCTTTGCTCCCTTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:766059..766682+

>Ggra8905.t1 ID=Ggra8905.t1|Name=Ggra8905.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=624bp|location=Sequence derived from alignment at tig00000860_pilon:766059..766682+ (Gracilaria gracilis GNS1m male)
ATGTGCTGGAAGTCTCATGCTGACGCATCGCACTTCTCAGGATGGGATGT
GAAGTTCTTGTACGGTGTCCGGAATCCTATTCATGCCACAAGGAGTTTTC
TCGACTTCGTGTACAACTGGTTGCTAGAAGACCCACCCCAGTCTCCTCTT
GTACTAGAGAAAGTATATGCTAAGTTCGTGGAGCGCTTTTTGCTCACTGA
CCCCGATAGACAGATAGCGGACTGGTTCACTCATACTCAATCTTTTCTCC
AGTTAGATGGAGAAGTGCTCTTCTTAGTTTTCGAAGACGTCATTAGAGAT
ATTGGTGGAACCGTTCGACAAATAGCTCGTTTTCTTGATATAGAAATGAG
TGACGAACAAGTGGAATATGTTATACGAAAGTGCGATAGGAAATCTATGG
CGAATGATCTGCGATTCAATGATCTCTCAATTTCCAGGTTGATGGGCTGG
AAAATATTCGAAGGGAGAAGAGTAAGGGAAGAACACGACGGCCTATTCAA
ACGGATAAAACTAGATCCTGTCGTCGAGCAGAAGGTGTGGAAGAAGTTCG
AAAAAGTCTTCGGTATGAAAAGCCACGCTGAGTTAGTGGCTGAGTTGCGA
AGGAGAAATTCTTTGCTCCCTTAG
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