Ggra890.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra890.t1
Unique NameGgra890.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length226
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000231_piloncontigtig00000231_pilon:50430..51107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S54_273V6.1
PFAMsCAS_CSE1,Cse1,IBN_N
Max annot lvl35493|Streptophyta
KEGG koko:K18423
Evalue6.57e-20
EggNOG OGsCOG5657@1|root,KOG1992@2759|Eukaryota,37PT8@33090|Viridiplantae,3G94N@35493|Streptophyta
DescriptionExportin-2
COG categoryUY
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra890Ggra890Gracilaria gracilis GNS1m malegenetig00000231_pilon 50430..51107 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra890.t1.start1Ggra890.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000231_pilon 50430..50432 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra890.t1.CDS1Ggra890.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000231_pilon 50430..51107 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra890.t1.exon1Ggra890.t1.exon1Gracilaria gracilis GNS1m maleexontig00000231_pilon 50430..51107 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra890.t1.stop1Ggra890.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000231_pilon 51105..51107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra890.t1Ggra890.t1Gracilaria gracilis GNS1m malepolypeptidetig00000231_pilon 50430..51107 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra890.t1 ID=Ggra890.t1|Name=Ggra890.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=226bp
MPRLRDSSCATPPTPAARSRRPFCAAHPSLVPRRASGIPPALPLRPPRYA
SGPAPLPWPPLRDSPLPSAPRVSSPCRRAPPPFLHRLRHKSSVANFGMAL
MEHLCNILMSDITEFGPYVFQVVSQLILAHDDQLPNTHDSLLPPLPAPQI
WERRSYIPGMTQFIDPYIRKSKRPVVEAKQLEQVLGIVQKLLASKATDHH
ASQLLATLLRAYDVPTLTLYVVKIF*
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spliced messenger RNA

>Ggra890.t1 ID=Ggra890.t1|Name=Ggra890.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00000231_pilon:50430..51107+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCGCCTCCGGGATTCCAGCTGCGCTACTCCTCCGACCCCCGCGGC
GCGCTCCCGACGTCCGTTTTGCGCCGCGCACCCGTCCCTTGTGCCACGCC
GCGCCTCCGGGATTCCACCTGCGCTACCTCTCCGGCCTCCGCGCTACGCC
TCCGGCCCCGCACCGCTCCCCTGGCCTCCGCTCCGTGACTCTCCTCTACC
CTCCGCGCCGCGCGTTTCCTCGCCGTGCCGCCGCGCGCCTCCGCCCTTCC
TGCACCGCCTCCGGCACAAATCATCGGTTGCAAACTTTGGTATGGCGTTA
ATGGAACATTTGTGTAATATTCTTATGTCAGATATAACTGAGTTCGGCCC
GTACGTATTTCAAGTAGTGAGTCAGCTTATCCTAGCTCATGATGACCAGC
TTCCGAATACACATGATAGCTTGCTTCCTCCACTACCAGCACCTCAGATA
TGGGAGAGACGATCTTATATTCCAGGAATGACTCAGTTCATCGACCCATA
CATCCGAAAGTCGAAGAGGCCAGTCGTTGAAGCAAAGCAACTAGAACAAG
TTCTAGGCATTGTTCAAAAGTTGCTGGCCTCCAAAGCAACAGACCATCAT
GCTTCGCAGCTACTAGCGACACTTTTAAGGGCCTATGATGTTCCCACTCT
CACTCTATACGTGGTGAAGATCTTCTAA
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protein sequence of Ggra890.t1

>Ggra890.t1 ID=Ggra890.t1|Name=Ggra890.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=226bp
MPRLRDSSCATPPTPAARSRRPFCAAHPSLVPRRASGIPPALPLRPPRYA
SGPAPLPWPPLRDSPLPSAPRVSSPCRRAPPPFLHRLRHKSSVANFGMAL
MEHLCNILMSDITEFGPYVFQVVSQLILAHDDQLPNTHDSLLPPLPAPQI
WERRSYIPGMTQFIDPYIRKSKRPVVEAKQLEQVLGIVQKLLASKATDHH
ASQLLATLLRAYDVPTLTLYVVKIF*
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mRNA from alignment at tig00000231_pilon:50430..51107+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra890.t1 ID=Ggra890.t1|Name=Ggra890.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00000231_pilon:50430..51107+ (Gracilaria gracilis GNS1m male)
ATGCCGCGCCTCCGGGATTCCAGCTGCGCTACTCCTCCGACCCCCGCGGC
GCGCTCCCGACGTCCGTTTTGCGCCGCGCACCCGTCCCTTGTGCCACGCC
GCGCCTCCGGGATTCCACCTGCGCTACCTCTCCGGCCTCCGCGCTACGCC
TCCGGCCCCGCACCGCTCCCCTGGCCTCCGCTCCGTGACTCTCCTCTACC
CTCCGCGCCGCGCGTTTCCTCGCCGTGCCGCCGCGCGCCTCCGCCCTTCC
TGCACCGCCTCCGGCACAAATCATCGGTTGCAAACTTTGGTATGGCGTTA
ATGGAACATTTGTGTAATATTCTTATGTCAGATATAACTGAGTTCGGCCC
GTACGTATTTCAAGTAGTGAGTCAGCTTATCCTAGCTCATGATGACCAGC
TTCCGAATACACATGATAGCTTGCTTCCTCCACTACCAGCACCTCAGATA
TGGGAGAGACGATCTTATATTCCAGGAATGACTCAGTTCATCGACCCATA
CATCCGAAAGTCGAAGAGGCCAGTCGTTGAAGCAAAGCAACTAGAACAAG
TTCTAGGCATTGTTCAAAAGTTGCTGGCCTCCAAAGCAACAGACCATCAT
GCTTCGCAGCTACTAGCGACACTTTTAAGGGCCTATGATGTTCCCACTCT
CACTCTATACGTGGTGAAGATCTTCTAA
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Coding sequence (CDS) from alignment at tig00000231_pilon:50430..51107+

>Ggra890.t1 ID=Ggra890.t1|Name=Ggra890.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=678bp|location=Sequence derived from alignment at tig00000231_pilon:50430..51107+ (Gracilaria gracilis GNS1m male)
ATGCCGCGCCTCCGGGATTCCAGCTGCGCTACTCCTCCGACCCCCGCGGC
GCGCTCCCGACGTCCGTTTTGCGCCGCGCACCCGTCCCTTGTGCCACGCC
GCGCCTCCGGGATTCCACCTGCGCTACCTCTCCGGCCTCCGCGCTACGCC
TCCGGCCCCGCACCGCTCCCCTGGCCTCCGCTCCGTGACTCTCCTCTACC
CTCCGCGCCGCGCGTTTCCTCGCCGTGCCGCCGCGCGCCTCCGCCCTTCC
TGCACCGCCTCCGGCACAAATCATCGGTTGCAAACTTTGGTATGGCGTTA
ATGGAACATTTGTGTAATATTCTTATGTCAGATATAACTGAGTTCGGCCC
GTACGTATTTCAAGTAGTGAGTCAGCTTATCCTAGCTCATGATGACCAGC
TTCCGAATACACATGATAGCTTGCTTCCTCCACTACCAGCACCTCAGATA
TGGGAGAGACGATCTTATATTCCAGGAATGACTCAGTTCATCGACCCATA
CATCCGAAAGTCGAAGAGGCCAGTCGTTGAAGCAAAGCAACTAGAACAAG
TTCTAGGCATTGTTCAAAAGTTGCTGGCCTCCAAAGCAACAGACCATCAT
GCTTCGCAGCTACTAGCGACACTTTTAAGGGCCTATGATGTTCCCACTCT
CACTCTATACGTGGTGAAGATCTTCTAA
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