Ggra8898.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8898.t1
Unique Name	Ggra8898.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	408

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:683776..684999 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4792.ETI50502
PFAMs	NIF
Max annot lvl	4776\|Peronosporales
KEGG ko	ko:K15731
Evalue	9.09e-59
EggNOG OGs	COG5190@1\|root,KOG1605@2759\|Eukaryota,3Q89F@4776\|Peronosporales
EC	3.1.3.16
Description	Nuclear LIM factor interactor-interacting protein
COG category	K
BRITE	ko00000,ko01000,ko01009,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8898	Ggra8898	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 683776..684999 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8898.t1.start1	Ggra8898.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 683776..683778 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8898.t1.CDS1	Ggra8898.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 683776..684999 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8898.t1.exon1	Ggra8898.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 683776..684999 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8898.t1.stop1	Ggra8898.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 684997..684999 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8898.t1	Ggra8898.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 683776..684999 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:683776..684999+
coding sequence from alignment at tig00000860_pilon:683776..684999+

mRNA sequence

>Ggra8898.t1 ID=Ggra8898.t1|Name=Ggra8898.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=408bp
MSDSPDAASKAASEAAQVATSAESHPISSSASTDFATIAADAAHSKTAPQ
PSVPITTPSSEPTAETNHDSFAEPSNSASRTPSSDSDDGDTIVDEPPTKQ
PVSPVSTASGQSPTPPLDIIHSVANTSPVPPLSPVGDTPSPTPRTGVFSI
FSPRNGKSTSPLRRLFSPRWFSAPPVERDTESTITNNPPRRMNVVCSCFA
RPQTVDESLPDYDYVEHIKSLEPTYEPEPPLLPTPSPHAEDRICLVLDLD
ETLVHSSFTPLPNADFEVPLDMQGEIHTVYVKKRPGVDNFLKKASEWFEI
VIFTASLALYANPVVDLLDPHNLVELRLYREHCVLIGGCYVKDIAKLGRD
LKRTVIIDNSPLSYVLQPENAIPISAFFTDDNDRELDKTLALLEQARNLE
DVRKALT*

spliced messenger RNA

>Ggra8898.t1 ID=Ggra8898.t1|Name=Ggra8898.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1224bp|location=Sequence derived from alignment at tig00000860_pilon:683776..684999+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGACTCGCCCGACGCGGCTTCCAAAGCCGCATCGGAAGCTGCCCA
AGTAGCGACTTCTGCCGAGAGTCACCCAATCTCTTCGTCCGCTTCAACCG
ACTTTGCTACTATTGCAGCCGATGCAGCCCACTCCAAAACAGCCCCGCAA
CCTTCTGTCCCGATAACCACTCCAAGCAGCGAACCCACCGCCGAAACAAA
CCACGATTCTTTTGCCGAACCATCCAACTCAGCCTCTCGGACGCCTTCAT
CCGATTCCGACGATGGCGACACCATTGTCGATGAGCCGCCGACCAAGCAA
CCAGTATCTCCTGTTTCGACCGCTAGTGGTCAATCCCCAACTCCTCCTCT
TGACATCATTCATTCCGTTGCGAATACATCCCCCGTGCCCCCGCTTTCAC
CAGTTGGTGATACCCCATCTCCAACCCCTCGCACAGGCGTGTTTTCGATC
TTTTCACCTCGTAATGGCAAGTCCACTTCCCCTCTGCGTCGCTTGTTCTC
TCCTCGTTGGTTCAGCGCACCCCCTGTTGAGCGTGACACAGAATCTACCA
TCACAAATAACCCCCCGCGAAGAATGAACGTCGTCTGCTCTTGTTTTGCC
CGCCCACAGACAGTGGACGAATCCTTGCCAGATTATGATTATGTGGAGCA
CATCAAAAGCCTCGAACCCACATATGAACCAGAACCGCCACTTCTTCCTA
CTCCATCACCGCATGCGGAGGATCGCATATGCCTGGTGCTTGACCTCGAC
GAGACACTTGTTCATAGCAGCTTCACGCCGTTACCAAATGCTGACTTTGA
GGTTCCTTTGGATATGCAGGGAGAGATACATACCGTGTACGTCAAGAAGC
GTCCTGGAGTAGATAACTTTCTTAAGAAGGCTAGTGAGTGGTTTGAGATC
GTCATTTTCACTGCTTCTCTCGCTTTGTACGCCAATCCTGTTGTTGATTT
GCTCGACCCTCACAACCTGGTGGAGCTGAGACTCTACCGTGAACACTGCG
TTCTGATAGGAGGTTGTTATGTGAAGGACATTGCCAAACTTGGTCGTGAT
TTGAAGAGAACGGTCATCATTGACAATAGCCCATTGAGTTACGTGCTTCA
GCCAGAGAATGCGATTCCCATATCGGCGTTCTTCACGGACGACAACGACA
GAGAACTTGACAAGACACTAGCACTTCTTGAACAAGCTAGGAATCTTGAA
GATGTCAGAAAAGCACTCACATAG

protein sequence of Ggra8898.t1

>Ggra8898.t1 ID=Ggra8898.t1|Name=Ggra8898.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=408bp
MSDSPDAASKAASEAAQVATSAESHPISSSASTDFATIAADAAHSKTAPQ
PSVPITTPSSEPTAETNHDSFAEPSNSASRTPSSDSDDGDTIVDEPPTKQ
PVSPVSTASGQSPTPPLDIIHSVANTSPVPPLSPVGDTPSPTPRTGVFSI
FSPRNGKSTSPLRRLFSPRWFSAPPVERDTESTITNNPPRRMNVVCSCFA
RPQTVDESLPDYDYVEHIKSLEPTYEPEPPLLPTPSPHAEDRICLVLDLD
ETLVHSSFTPLPNADFEVPLDMQGEIHTVYVKKRPGVDNFLKKASEWFEI
VIFTASLALYANPVVDLLDPHNLVELRLYREHCVLIGGCYVKDIAKLGRD
LKRTVIIDNSPLSYVLQPENAIPISAFFTDDNDRELDKTLALLEQARNLE
DVRKALT*

mRNA from alignment at tig00000860_pilon:683776..684999+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8898.t1 ID=Ggra8898.t1|Name=Ggra8898.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1224bp|location=Sequence derived from alignment at tig00000860_pilon:683776..684999+ (Gracilaria gracilis GNS1m male)
ATGAGCGACTCGCCCGACGCGGCTTCCAAAGCCGCATCGGAAGCTGCCCA
AGTAGCGACTTCTGCCGAGAGTCACCCAATCTCTTCGTCCGCTTCAACCG
ACTTTGCTACTATTGCAGCCGATGCAGCCCACTCCAAAACAGCCCCGCAA
CCTTCTGTCCCGATAACCACTCCAAGCAGCGAACCCACCGCCGAAACAAA
CCACGATTCTTTTGCCGAACCATCCAACTCAGCCTCTCGGACGCCTTCAT
CCGATTCCGACGATGGCGACACCATTGTCGATGAGCCGCCGACCAAGCAA
CCAGTATCTCCTGTTTCGACCGCTAGTGGTCAATCCCCAACTCCTCCTCT
TGACATCATTCATTCCGTTGCGAATACATCCCCCGTGCCCCCGCTTTCAC
CAGTTGGTGATACCCCATCTCCAACCCCTCGCACAGGCGTGTTTTCGATC
TTTTCACCTCGTAATGGCAAGTCCACTTCCCCTCTGCGTCGCTTGTTCTC
TCCTCGTTGGTTCAGCGCACCCCCTGTTGAGCGTGACACAGAATCTACCA
TCACAAATAACCCCCCGCGAAGAATGAACGTCGTCTGCTCTTGTTTTGCC
CGCCCACAGACAGTGGACGAATCCTTGCCAGATTATGATTATGTGGAGCA
CATCAAAAGCCTCGAACCCACATATGAACCAGAACCGCCACTTCTTCCTA
CTCCATCACCGCATGCGGAGGATCGCATATGCCTGGTGCTTGACCTCGAC
GAGACACTTGTTCATAGCAGCTTCACGCCGTTACCAAATGCTGACTTTGA
GGTTCCTTTGGATATGCAGGGAGAGATACATACCGTGTACGTCAAGAAGC
GTCCTGGAGTAGATAACTTTCTTAAGAAGGCTAGTGAGTGGTTTGAGATC
GTCATTTTCACTGCTTCTCTCGCTTTGTACGCCAATCCTGTTGTTGATTT
GCTCGACCCTCACAACCTGGTGGAGCTGAGACTCTACCGTGAACACTGCG
TTCTGATAGGAGGTTGTTATGTGAAGGACATTGCCAAACTTGGTCGTGAT
TTGAAGAGAACGGTCATCATTGACAATAGCCCATTGAGTTACGTGCTTCA
GCCAGAGAATGCGATTCCCATATCGGCGTTCTTCACGGACGACAACGACA
GAGAACTTGACAAGACACTAGCACTTCTTGAACAAGCTAGGAATCTTGAA
GATGTCAGAAAAGCACTCACATAG

Coding sequence (CDS) from alignment at tig00000860_pilon:683776..684999+

>Ggra8898.t1 ID=Ggra8898.t1|Name=Ggra8898.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1224bp|location=Sequence derived from alignment at tig00000860_pilon:683776..684999+ (Gracilaria gracilis GNS1m male)
ATGAGCGACTCGCCCGACGCGGCTTCCAAAGCCGCATCGGAAGCTGCCCA
AGTAGCGACTTCTGCCGAGAGTCACCCAATCTCTTCGTCCGCTTCAACCG
ACTTTGCTACTATTGCAGCCGATGCAGCCCACTCCAAAACAGCCCCGCAA
CCTTCTGTCCCGATAACCACTCCAAGCAGCGAACCCACCGCCGAAACAAA
CCACGATTCTTTTGCCGAACCATCCAACTCAGCCTCTCGGACGCCTTCAT
CCGATTCCGACGATGGCGACACCATTGTCGATGAGCCGCCGACCAAGCAA
CCAGTATCTCCTGTTTCGACCGCTAGTGGTCAATCCCCAACTCCTCCTCT
TGACATCATTCATTCCGTTGCGAATACATCCCCCGTGCCCCCGCTTTCAC
CAGTTGGTGATACCCCATCTCCAACCCCTCGCACAGGCGTGTTTTCGATC
TTTTCACCTCGTAATGGCAAGTCCACTTCCCCTCTGCGTCGCTTGTTCTC
TCCTCGTTGGTTCAGCGCACCCCCTGTTGAGCGTGACACAGAATCTACCA
TCACAAATAACCCCCCGCGAAGAATGAACGTCGTCTGCTCTTGTTTTGCC
CGCCCACAGACAGTGGACGAATCCTTGCCAGATTATGATTATGTGGAGCA
CATCAAAAGCCTCGAACCCACATATGAACCAGAACCGCCACTTCTTCCTA
CTCCATCACCGCATGCGGAGGATCGCATATGCCTGGTGCTTGACCTCGAC
GAGACACTTGTTCATAGCAGCTTCACGCCGTTACCAAATGCTGACTTTGA
GGTTCCTTTGGATATGCAGGGAGAGATACATACCGTGTACGTCAAGAAGC
GTCCTGGAGTAGATAACTTTCTTAAGAAGGCTAGTGAGTGGTTTGAGATC
GTCATTTTCACTGCTTCTCTCGCTTTGTACGCCAATCCTGTTGTTGATTT
GCTCGACCCTCACAACCTGGTGGAGCTGAGACTCTACCGTGAACACTGCG
TTCTGATAGGAGGTTGTTATGTGAAGGACATTGCCAAACTTGGTCGTGAT
TTGAAGAGAACGGTCATCATTGACAATAGCCCATTGAGTTACGTGCTTCA
GCCAGAGAATGCGATTCCCATATCGGCGTTCTTCACGGACGACAACGACA
GAGAACTTGACAAGACACTAGCACTTCTTGAACAAGCTAGGAATCTTGAA
GATGTCAGAAAAGCACTCACATAG