Ggra8897.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8897.t1
Unique NameGgra8897.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length273
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:681054..681872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8897Ggra8897Gracilaria gracilis GNS1m malegenetig00000860_pilon 681054..681872 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8897.t1.stop1Ggra8897.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 681054..681056 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8897.t1.CDS1Ggra8897.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 681054..681872 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8897.t1.exon1Ggra8897.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 681054..681872 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8897.t1.start1Ggra8897.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 681870..681872 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8897.t1Ggra8897.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 681054..681872 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8897.t1 ID=Ggra8897.t1|Name=Ggra8897.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=273bp
MAFVITPNSLLRTTAFKGDVISQRPVTQTARVRMAVKEDPDSLWTSVGKS
DFKENVFTGGMPGGEAFYKAWVEDGMTKDFPDVPTKFQPKADYKPKKEVK
TGLIADLDKTEFFEGFTMPTEEEDKEGGEEKVEETDTEPSVSTTTGSDLP
SPALYEQYFPADRLNKAPEIKIVYENDYLLDRVSLAMTEVTASATDLYYP
KEMKDKAPIIDISYNGNLATASVSVSFEYIEGLPTLPAPPKAEGDTITSL
VPGPGGGLKLEFEAAGQGVVGV*
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spliced messenger RNA

>Ggra8897.t1 ID=Ggra8897.t1|Name=Ggra8897.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00000860_pilon:681054..681872- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTTGTAATTACTCCGAACTCTTTACTGCGTACAACAGCCTTTAA
AGGTGATGTCATAAGTCAGCGGCCCGTTACGCAGACTGCACGCGTGCGAA
TGGCTGTCAAGGAAGATCCGGATTCCTTGTGGACTTCAGTCGGTAAATCC
GACTTCAAGGAGAATGTGTTTACAGGCGGAATGCCGGGTGGGGAGGCATT
CTACAAGGCATGGGTTGAGGATGGCATGACAAAAGACTTTCCAGACGTCC
CAACCAAGTTTCAGCCCAAAGCTGACTATAAGCCCAAGAAAGAAGTGAAG
ACAGGTCTTATTGCTGATCTGGATAAGACAGAGTTCTTTGAGGGATTCAC
AATGCCCACTGAGGAGGAAGACAAGGAAGGCGGTGAGGAGAAAGTTGAGG
AAACAGACACAGAGCCATCCGTATCTACGACAACCGGTTCTGACCTTCCA
TCACCGGCTTTGTACGAGCAGTACTTTCCTGCGGATCGACTGAACAAGGC
TCCGGAAATCAAGATTGTCTATGAGAACGACTATTTACTAGACCGTGTTT
CGCTTGCTATGACCGAAGTCACGGCCTCTGCTACAGATTTGTACTACCCA
AAGGAAATGAAGGACAAGGCCCCCATAATCGATATTTCATACAACGGCAA
CCTTGCTACTGCTTCCGTGTCCGTATCCTTTGAGTATATCGAAGGTCTTC
CTACTTTGCCTGCACCTCCAAAAGCCGAAGGGGATACGATTACCTCCCTG
GTTCCAGGCCCAGGTGGTGGGCTCAAGCTGGAATTCGAAGCAGCAGGTCA
AGGTGTAGTGGGAGTATAA
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protein sequence of Ggra8897.t1

>Ggra8897.t1 ID=Ggra8897.t1|Name=Ggra8897.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=273bp
MAFVITPNSLLRTTAFKGDVISQRPVTQTARVRMAVKEDPDSLWTSVGKS
DFKENVFTGGMPGGEAFYKAWVEDGMTKDFPDVPTKFQPKADYKPKKEVK
TGLIADLDKTEFFEGFTMPTEEEDKEGGEEKVEETDTEPSVSTTTGSDLP
SPALYEQYFPADRLNKAPEIKIVYENDYLLDRVSLAMTEVTASATDLYYP
KEMKDKAPIIDISYNGNLATASVSVSFEYIEGLPTLPAPPKAEGDTITSL
VPGPGGGLKLEFEAAGQGVVGV*
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mRNA from alignment at tig00000860_pilon:681054..681872-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8897.t1 ID=Ggra8897.t1|Name=Ggra8897.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00000860_pilon:681054..681872- (Gracilaria gracilis GNS1m male)
ATGGCTTTTGTAATTACTCCGAACTCTTTACTGCGTACAACAGCCTTTAA
AGGTGATGTCATAAGTCAGCGGCCCGTTACGCAGACTGCACGCGTGCGAA
TGGCTGTCAAGGAAGATCCGGATTCCTTGTGGACTTCAGTCGGTAAATCC
GACTTCAAGGAGAATGTGTTTACAGGCGGAATGCCGGGTGGGGAGGCATT
CTACAAGGCATGGGTTGAGGATGGCATGACAAAAGACTTTCCAGACGTCC
CAACCAAGTTTCAGCCCAAAGCTGACTATAAGCCCAAGAAAGAAGTGAAG
ACAGGTCTTATTGCTGATCTGGATAAGACAGAGTTCTTTGAGGGATTCAC
AATGCCCACTGAGGAGGAAGACAAGGAAGGCGGTGAGGAGAAAGTTGAGG
AAACAGACACAGAGCCATCCGTATCTACGACAACCGGTTCTGACCTTCCA
TCACCGGCTTTGTACGAGCAGTACTTTCCTGCGGATCGACTGAACAAGGC
TCCGGAAATCAAGATTGTCTATGAGAACGACTATTTACTAGACCGTGTTT
CGCTTGCTATGACCGAAGTCACGGCCTCTGCTACAGATTTGTACTACCCA
AAGGAAATGAAGGACAAGGCCCCCATAATCGATATTTCATACAACGGCAA
CCTTGCTACTGCTTCCGTGTCCGTATCCTTTGAGTATATCGAAGGTCTTC
CTACTTTGCCTGCACCTCCAAAAGCCGAAGGGGATACGATTACCTCCCTG
GTTCCAGGCCCAGGTGGTGGGCTCAAGCTGGAATTCGAAGCAGCAGGTCA
AGGTGTAGTGGGAGTATAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:681054..681872-

>Ggra8897.t1 ID=Ggra8897.t1|Name=Ggra8897.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=819bp|location=Sequence derived from alignment at tig00000860_pilon:681054..681872- (Gracilaria gracilis GNS1m male)
ATGGCTTTTGTAATTACTCCGAACTCTTTACTGCGTACAACAGCCTTTAA
AGGTGATGTCATAAGTCAGCGGCCCGTTACGCAGACTGCACGCGTGCGAA
TGGCTGTCAAGGAAGATCCGGATTCCTTGTGGACTTCAGTCGGTAAATCC
GACTTCAAGGAGAATGTGTTTACAGGCGGAATGCCGGGTGGGGAGGCATT
CTACAAGGCATGGGTTGAGGATGGCATGACAAAAGACTTTCCAGACGTCC
CAACCAAGTTTCAGCCCAAAGCTGACTATAAGCCCAAGAAAGAAGTGAAG
ACAGGTCTTATTGCTGATCTGGATAAGACAGAGTTCTTTGAGGGATTCAC
AATGCCCACTGAGGAGGAAGACAAGGAAGGCGGTGAGGAGAAAGTTGAGG
AAACAGACACAGAGCCATCCGTATCTACGACAACCGGTTCTGACCTTCCA
TCACCGGCTTTGTACGAGCAGTACTTTCCTGCGGATCGACTGAACAAGGC
TCCGGAAATCAAGATTGTCTATGAGAACGACTATTTACTAGACCGTGTTT
CGCTTGCTATGACCGAAGTCACGGCCTCTGCTACAGATTTGTACTACCCA
AAGGAAATGAAGGACAAGGCCCCCATAATCGATATTTCATACAACGGCAA
CCTTGCTACTGCTTCCGTGTCCGTATCCTTTGAGTATATCGAAGGTCTTC
CTACTTTGCCTGCACCTCCAAAAGCCGAAGGGGATACGATTACCTCCCTG
GTTCCAGGCCCAGGTGGTGGGCTCAAGCTGGAATTCGAAGCAGCAGGTCA
AGGTGTAGTGGGAGTATAA
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