Ggra8895.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8895.t1
Unique NameGgra8895.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length159
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:676307..676881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8090.ENSORLP00000010428
Preferred nameISCU
PFAMsNifU_N
Max annot lvl33208|Metazoa
KEGG koko:K22068
GOsGO:0003674,GO:0003824,GO:0005198,GO:0005488,GO:0005506,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006790,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0008150,GO:0008152,GO:0008198,GO:0009987,GO:0010467,GO:0016043,GO:0016226,GO:0016740,GO:0016782,GO:0019538,GO:0019725,GO:0022607,GO:0030003,GO:0031163,GO:0031974,GO:0032947,GO:0032991,GO:0036455,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0046916,GO:0048037,GO:0048878,GO:0050801,GO:0051186,GO:0051536,GO:0051537,GO:0051539,GO:0051540,GO:0051604,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0097428,GO:0098771,GO:1901564,GO:1990221
Evalue5.6e-70
EggNOG OGsCOG0822@1|root,KOG3361@2759|Eukaryota,3A1JG@33154|Opisthokonta,3BPFS@33208|Metazoa,3D6D7@33213|Bilateria,48E6G@7711|Chordata,4959C@7742|Vertebrata,4A39R@7898|Actinopterygii
DescriptionScaffold protein for the de novo synthesis of iron- sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic 2Fe-2S and 4Fe-4S proteins
COG categoryC
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8895Ggra8895Gracilaria gracilis GNS1m malegenetig00000860_pilon 676307..676881 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8895.t1Ggra8895.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 676307..676881 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8895.t1.stop1Ggra8895.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 676307..676309 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8895.t1.CDS1Ggra8895.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 676307..676667 -
Ggra8895.t1.CDS2Ggra8895.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 676766..676881 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8895.t1.exon1Ggra8895.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 676307..676667 -
Ggra8895.t1.exon2Ggra8895.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 676766..676881 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8895.t1.intron1Ggra8895.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 676668..676765 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8895.t1.start1Ggra8895.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 676879..676881 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8895.t1 ID=Ggra8895.t1|Name=Ggra8895.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=159bp
MIRTTASTLQRTQAYALNALANRTRCYHDKVIDHYENPRNVGSLDKKDKN
VGTGLVGAPACGDVMKLQIRVNEDGEIVESAFKTFGCGSAIASSSLATEW
VKGRNVDDAKKIKNSDIAKELKLPPVKLHCSMLAEDAIKAAIKDLKQKRD
GQDSAPPS*
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spliced messenger RNA

>Ggra8895.t1 ID=Ggra8895.t1|Name=Ggra8895.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00000860_pilon:676307..676881- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTAGAACTACTGCGAGCACGCTTCAAAGGACACAAGCTTACGCTCT
CAATGCATTGGCCAACCGCACCCGTTGCTACCACGACAAGGTAATTGACC
ACTACGAAAACCCAAGAAACGTAGGGAGCCTTGACAAGAAAGACAAAAAC
GTCGGCACTGGTCTGGTGGGAGCCCCTGCCTGTGGCGATGTAATGAAGCT
TCAGATCCGAGTCAACGAAGATGGCGAAATCGTCGAGTCGGCATTTAAAA
CATTTGGGTGCGGGTCCGCCATTGCATCGTCTTCTCTCGCCACTGAATGG
GTCAAGGGAAGGAACGTCGATGACGCGAAGAAGATAAAGAACAGCGATAT
AGCGAAGGAACTCAAACTACCGCCTGTCAAATTGCATTGTTCTATGCTGG
CGGAGGATGCCATCAAGGCCGCTATTAAGGACCTTAAGCAAAAGCGGGAT
GGACAGGACAGTGCGCCACCTTCCTAG
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protein sequence of Ggra8895.t1

>Ggra8895.t1 ID=Ggra8895.t1|Name=Ggra8895.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=159bp
MIRTTASTLQRTQAYALNALANRTRCYHDKVIDHYENPRNVGSLDKKDKN
VGTGLVGAPACGDVMKLQIRVNEDGEIVESAFKTFGCGSAIASSSLATEW
VKGRNVDDAKKIKNSDIAKELKLPPVKLHCSMLAEDAIKAAIKDLKQKRD
GQDSAPPS*
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mRNA from alignment at tig00000860_pilon:676307..676881-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8895.t1 ID=Ggra8895.t1|Name=Ggra8895.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=575bp|location=Sequence derived from alignment at tig00000860_pilon:676307..676881- (Gracilaria gracilis GNS1m male)
ATGATTAGAACTACTGCGAGCACGCTTCAAAGGACACAAGCTTACGCTCT
CAATGCATTGGCCAACCGCACCCGTTGCTACCACGACAAGGTAATTGACC
ACTACGAAAACCCAAGGTAAGTGCATATGTATAAATATCACCGCTGCTTC
AACCAAGCAACTACGTAATGCCTAACAGCTTTTTCCTGCCAAAAAAAAAA
AAAAAAAAAAACAGAAACGTAGGGAGCCTTGACAAGAAAGACAAAAACGT
CGGCACTGGTCTGGTGGGAGCCCCTGCCTGTGGCGATGTAATGAAGCTTC
AGATCCGAGTCAACGAAGATGGCGAAATCGTCGAGTCGGCATTTAAAACA
TTTGGGTGCGGGTCCGCCATTGCATCGTCTTCTCTCGCCACTGAATGGGT
CAAGGGAAGGAACGTCGATGACGCGAAGAAGATAAAGAACAGCGATATAG
CGAAGGAACTCAAACTACCGCCTGTCAAATTGCATTGTTCTATGCTGGCG
GAGGATGCCATCAAGGCCGCTATTAAGGACCTTAAGCAAAAGCGGGATGG
ACAGGACAGTGCGCCACCTTCCTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:676307..676881-

>Ggra8895.t1 ID=Ggra8895.t1|Name=Ggra8895.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=477bp|location=Sequence derived from alignment at tig00000860_pilon:676307..676881- (Gracilaria gracilis GNS1m male)
ATGATTAGAACTACTGCGAGCACGCTTCAAAGGACACAAGCTTACGCTCT
CAATGCATTGGCCAACCGCACCCGTTGCTACCACGACAAGGTAATTGACC
ACTACGAAAACCCAAGAAACGTAGGGAGCCTTGACAAGAAAGACAAAAAC
GTCGGCACTGGTCTGGTGGGAGCCCCTGCCTGTGGCGATGTAATGAAGCT
TCAGATCCGAGTCAACGAAGATGGCGAAATCGTCGAGTCGGCATTTAAAA
CATTTGGGTGCGGGTCCGCCATTGCATCGTCTTCTCTCGCCACTGAATGG
GTCAAGGGAAGGAACGTCGATGACGCGAAGAAGATAAAGAACAGCGATAT
AGCGAAGGAACTCAAACTACCGCCTGTCAAATTGCATTGTTCTATGCTGG
CGGAGGATGCCATCAAGGCCGCTATTAAGGACCTTAAGCAAAAGCGGGAT
GGACAGGACAGTGCGCCACCTTCCTAG
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