Ggra8894.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8894.t1
Unique NameGgra8894.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length279
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:673555..674534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7719.XP_002129192.1
Preferred namePRKAB2
PFAMsAMPK1_CBM,AMPKBI
Max annot lvl33208|Metazoa
KEGG koko:K07199
KEGG Pathwayko04068,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,map04068,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004679,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0005952,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006914,GO:0007049,GO:0007050,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009889,GO:0009893,GO:0009987,GO:0010468,GO:0010565,GO:0010604,GO:0010628,GO:0016020,GO:0016043,GO:0016236,GO:0016301,GO:0016310,GO:0016324,GO:0016740,GO:0016772,GO:0016773,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0022402,GO:0022607,GO:0023052,GO:0031323,GO:0031326,GO:0031588,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0035878,GO:0036211,GO:0042304,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045177,GO:0045786,GO:0046890,GO:0048518,GO:0048519,GO:0048523,GO:0048736,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051259,GO:0051291,GO:0051716,GO:0051726,GO:0060173,GO:0060255,GO:0061695,GO:0061919,GO:0062012,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0098590,GO:0140096,GO:1901564,GO:1902494,GO:1902911,GO:1990234
Evalue2.8e-28
EggNOG OGsKOG1616@1|root,KOG1616@2759|Eukaryota,38HM7@33154|Opisthokonta,3BEI5@33208|Metazoa,3CRZR@33213|Bilateria,4856H@7711|Chordata
Descriptionnail development
COG categoryG
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8894Ggra8894Gracilaria gracilis GNS1m malegenetig00000860_pilon 673555..674534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8894.t1Ggra8894.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 673555..674534 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8894.t1.stop1Ggra8894.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 673555..673557 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8894.t1.CDS1Ggra8894.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 673555..674077 -
Ggra8894.t1.CDS2Ggra8894.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 674221..674534 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8894.t1.exon1Ggra8894.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 673555..674077 -
Ggra8894.t1.exon2Ggra8894.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 674221..674534 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8894.t1.intron1Ggra8894.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 674078..674220 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8894.t1.start1Ggra8894.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 674532..674534 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8894.t1 ID=Ggra8894.t1|Name=Ggra8894.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=279bp
MGGTASRPSELSTSEDHQSTSDATLPQESYSTLDIDDRNNSSTEHIVPTE
FKWNNGGYSVYITGAWDDWSRKTQLSRTHPAEFATVLALPVGTFQYKFIV
DGNWKHNPLDPTARDSHGNLNNVITITPQPPEYDSNEPLNIDDLSRSPVE
SYNYTLLAEEDHTTEAPSLPRILANAPIDHKLRSNTSGTDFVRLNHLFLI
NSDSSYGSAQTRTMAIERRFKDKVVTTILVTPKGRVGPDTMSEQQFGGTR
SEPIPIPTGSVQSMSESQSLLLDALNNV*
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spliced messenger RNA

>Ggra8894.t1 ID=Ggra8894.t1|Name=Ggra8894.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000860_pilon:673555..674534- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGGAACAGCATCACGTCCCAGTGAACTTTCGACTTCAGAAGACCA
TCAAAGCACAAGCGATGCTACTCTTCCTCAAGAATCGTACTCTACACTTG
ATATCGATGACCGGAACAACAGCAGTACCGAGCATATTGTGCCCACAGAA
TTTAAGTGGAACAATGGCGGATACTCTGTGTATATAACTGGCGCGTGGGA
TGATTGGAGCCGAAAAACTCAATTGAGTAGAACGCATCCGGCTGAGTTTG
CAACTGTTTTGGCCCTACCCGTTGGTACTTTTCAGTACAAGTTCATTGTT
GATGGCAACTGGAAACATAATCCGTTGGATCCAACAGCTCGAGACTCACA
TGGGAACCTTAATAACGTAATCACCATAACACCACAGCCCCCTGAGTATG
ATTCAAACGAACCGCTGAACATCGATGACCTCTCGCGATCACCCGTGGAA
TCATATAATTACACGTTACTTGCCGAAGAAGACCATACAACAGAGGCGCC
AAGCCTACCAAGAATACTTGCCAATGCTCCGATCGACCACAAACTACGGT
CCAACACGAGCGGTACAGATTTTGTACGTTTGAACCATCTCTTCCTAATT
AATAGCGATTCTTCGTATGGATCAGCACAGACTCGTACAATGGCCATCGA
ACGACGTTTCAAAGACAAAGTGGTCACGACAATCTTGGTGACACCAAAAG
GAAGAGTCGGACCTGACACTATGTCTGAGCAACAGTTCGGAGGCACGCGA
TCAGAGCCGATTCCCATCCCCACCGGGTCGGTGCAGTCCATGAGTGAATC
GCAATCACTTCTTCTTGACGCATTAAACAATGTTTGA
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protein sequence of Ggra8894.t1

>Ggra8894.t1 ID=Ggra8894.t1|Name=Ggra8894.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=279bp
MGGTASRPSELSTSEDHQSTSDATLPQESYSTLDIDDRNNSSTEHIVPTE
FKWNNGGYSVYITGAWDDWSRKTQLSRTHPAEFATVLALPVGTFQYKFIV
DGNWKHNPLDPTARDSHGNLNNVITITPQPPEYDSNEPLNIDDLSRSPVE
SYNYTLLAEEDHTTEAPSLPRILANAPIDHKLRSNTSGTDFVRLNHLFLI
NSDSSYGSAQTRTMAIERRFKDKVVTTILVTPKGRVGPDTMSEQQFGGTR
SEPIPIPTGSVQSMSESQSLLLDALNNV*
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mRNA from alignment at tig00000860_pilon:673555..674534-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8894.t1 ID=Ggra8894.t1|Name=Ggra8894.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=980bp|location=Sequence derived from alignment at tig00000860_pilon:673555..674534- (Gracilaria gracilis GNS1m male)
ATGGGAGGAACAGCATCACGTCCCAGTGAACTTTCGACTTCAGAAGACCA
TCAAAGCACAAGCGATGCTACTCTTCCTCAAGAATCGTACTCTACACTTG
ATATCGATGACCGGAACAACAGCAGTACCGAGCATATTGTGCCCACAGAA
TTTAAGTGGAACAATGGCGGATACTCTGTGTATATAACTGGCGCGTGGGA
TGATTGGAGCCGAAAAACTCAATTGAGTAGAACGCATCCGGCTGAGTTTG
CAACTGTTTTGGCCCTACCCGTTGGTACTTTTCAGTACAAGTTCATTGTT
GATGGCAACTGGAAGTAAGAAAATTGCAATCTTGTTTCTCGTCTTACTCT
GACGAAACGCACTATATATACGAAGCGATTCAAATCGCGAACCAAGTAAC
GGAATTCTAACCTCGTTCTTTTTGTTCATGTACGGTTTCGTTCGCTTAAC
TAAACAGACATAATCCGTTGGATCCAACAGCTCGAGACTCACATGGGAAC
CTTAATAACGTAATCACCATAACACCACAGCCCCCTGAGTATGATTCAAA
CGAACCGCTGAACATCGATGACCTCTCGCGATCACCCGTGGAATCATATA
ATTACACGTTACTTGCCGAAGAAGACCATACAACAGAGGCGCCAAGCCTA
CCAAGAATACTTGCCAATGCTCCGATCGACCACAAACTACGGTCCAACAC
GAGCGGTACAGATTTTGTACGTTTGAACCATCTCTTCCTAATTAATAGCG
ATTCTTCGTATGGATCAGCACAGACTCGTACAATGGCCATCGAACGACGT
TTCAAAGACAAAGTGGTCACGACAATCTTGGTGACACCAAAAGGAAGAGT
CGGACCTGACACTATGTCTGAGCAACAGTTCGGAGGCACGCGATCAGAGC
CGATTCCCATCCCCACCGGGTCGGTGCAGTCCATGAGTGAATCGCAATCA
CTTCTTCTTGACGCATTAAACAATGTTTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:673555..674534-

>Ggra8894.t1 ID=Ggra8894.t1|Name=Ggra8894.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=837bp|location=Sequence derived from alignment at tig00000860_pilon:673555..674534- (Gracilaria gracilis GNS1m male)
ATGGGAGGAACAGCATCACGTCCCAGTGAACTTTCGACTTCAGAAGACCA
TCAAAGCACAAGCGATGCTACTCTTCCTCAAGAATCGTACTCTACACTTG
ATATCGATGACCGGAACAACAGCAGTACCGAGCATATTGTGCCCACAGAA
TTTAAGTGGAACAATGGCGGATACTCTGTGTATATAACTGGCGCGTGGGA
TGATTGGAGCCGAAAAACTCAATTGAGTAGAACGCATCCGGCTGAGTTTG
CAACTGTTTTGGCCCTACCCGTTGGTACTTTTCAGTACAAGTTCATTGTT
GATGGCAACTGGAAACATAATCCGTTGGATCCAACAGCTCGAGACTCACA
TGGGAACCTTAATAACGTAATCACCATAACACCACAGCCCCCTGAGTATG
ATTCAAACGAACCGCTGAACATCGATGACCTCTCGCGATCACCCGTGGAA
TCATATAATTACACGTTACTTGCCGAAGAAGACCATACAACAGAGGCGCC
AAGCCTACCAAGAATACTTGCCAATGCTCCGATCGACCACAAACTACGGT
CCAACACGAGCGGTACAGATTTTGTACGTTTGAACCATCTCTTCCTAATT
AATAGCGATTCTTCGTATGGATCAGCACAGACTCGTACAATGGCCATCGA
ACGACGTTTCAAAGACAAAGTGGTCACGACAATCTTGGTGACACCAAAAG
GAAGAGTCGGACCTGACACTATGTCTGAGCAACAGTTCGGAGGCACGCGA
TCAGAGCCGATTCCCATCCCCACCGGGTCGGTGCAGTCCATGAGTGAATC
GCAATCACTTCTTCTTGACGCATTAAACAATGTTTGA
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