Ggra8892.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8892.t1
Unique Name	Ggra8892.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	583

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:669013..670761 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	329726.AM1_4318
PFAMs	Pkinase
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K00870
Evalue	1.72e-94
EggNOG OGs	COG0515@1\|root,COG0515@2\|Bacteria,1G28A@1117\|Cyanobacteria
EC	2.7.1.37
Description	PFAM Protein kinase domain
COG category	KLT
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8892	Ggra8892	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 669013..670761 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8892.t1.stop1	Ggra8892.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 669013..669015 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8892.t1.CDS1	Ggra8892.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 669013..670761 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8892.t1.exon1	Ggra8892.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 669013..670761 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8892.t1.start1	Ggra8892.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 670759..670761 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8892.t1	Ggra8892.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 669013..670761 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:669013..670761-
coding sequence from alignment at tig00000860_pilon:669013..670761-

mRNA sequence

>Ggra8892.t1 ID=Ggra8892.t1|Name=Ggra8892.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=583bp
MGHLWREQTRTENAVTDPQKPCAVAFQVPISLSTYQSLYISKKCAHRKPK
VPKRPRCCPYRRLRLSSSFERDEVINDYRVVDVIGRGTTGLTYEAIATRG
PYRSKRLALKALSVRSLTNWKTLDLFQREARTLKSLSHPSIPNYVDFFEF
ETEKDTAYILVQKKAEGTALQTLIDEGYRFSTEQVKQTFIKLLEVLSYLA
SLNPPVLHCDIKPANIIVDLSNSDVALSLVDFGGVRTGVTTPGSTLVGTY
GFMAPEQFTGLADVRSDMYAAAATILCMLTSQPPSALPQKRLKIDLATVI
PKREQVKLGNIYSVMAKLLEPAPEDRYDSPSEALAVLNGTTIDRVSSLHS
VPNLLKVTSSLSPEDTTSLQDALANMNTSEPKSNALQMLSMLTRRRVRRR
KPAGSRIVLERDRNNRLLTVSIPPKGISSEALSRGAFTVAWTGFTAFWTL
GVLTGGAPIIFSLFSLPFWAAGYRFARSTADEITGSTDIVISFGGGDRKV
FYFGLSSKSALGQGVFVEGDARDLDRTSMETEMYVNGRPVAELVLNEGTR
RHVFGEALDPVEQEWLRDEINDFIGSQNGRSR*

spliced messenger RNA

>Ggra8892.t1 ID=Ggra8892.t1|Name=Ggra8892.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1749bp|location=Sequence derived from alignment at tig00000860_pilon:669013..670761- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCATCTTTGGAGGGAACAAACAAGGACAGAAAACGCTGTAACAGA
TCCTCAGAAACCTTGTGCTGTGGCTTTTCAGGTTCCGATATCTCTTTCCA
CATATCAGTCTCTCTACATTTCTAAGAAGTGTGCACATCGAAAGCCAAAA
GTACCTAAGCGGCCTCGGTGCTGTCCATACCGTCGCCTGCGCCTGTCCTC
TTCGTTCGAGCGGGATGAGGTCATCAATGATTACCGAGTTGTTGATGTAA
TCGGCCGAGGAACAACCGGTCTCACTTACGAAGCTATAGCGACAAGGGGA
CCCTATCGCTCTAAGCGATTGGCATTGAAAGCACTTTCAGTTCGGTCCCT
TACTAATTGGAAAACACTGGACCTTTTCCAAAGAGAGGCGAGAACTCTTA
AATCCCTCTCACATCCGTCGATTCCAAACTATGTGGACTTTTTCGAGTTC
GAAACAGAAAAGGACACTGCATACATTCTAGTCCAGAAAAAAGCGGAAGG
AACAGCACTTCAGACACTCATAGATGAAGGCTATCGATTTTCTACAGAGC
AAGTCAAGCAAACCTTCATCAAGCTTCTGGAAGTGCTTTCTTATCTAGCA
TCCCTTAATCCCCCAGTTCTTCATTGTGATATAAAACCGGCAAACATTAT
TGTGGATCTTAGCAATTCCGATGTAGCACTCTCATTGGTTGACTTTGGTG
GTGTGAGAACGGGTGTAACAACGCCGGGGTCAACTTTGGTTGGTACTTAC
GGCTTTATGGCCCCGGAACAATTCACAGGGCTTGCAGATGTGCGAAGCGA
CATGTATGCCGCAGCAGCCACTATTCTTTGCATGCTGACCTCCCAACCAC
CGTCCGCTCTTCCGCAGAAACGTCTGAAGATAGACTTGGCGACTGTGATT
CCTAAGAGAGAACAGGTCAAACTTGGAAATATTTACTCCGTGATGGCCAA
ACTCCTGGAACCAGCTCCGGAAGATCGATACGACAGCCCGTCAGAAGCCT
TAGCGGTATTGAACGGCACAACCATCGATCGAGTGTCCTCGCTCCATTCT
GTCCCGAATTTGCTCAAAGTTACTTCAAGCCTAAGTCCTGAAGACACCAC
ATCTCTACAGGACGCGCTAGCAAATATGAACACAAGTGAGCCGAAGTCAA
ACGCGTTGCAAATGTTGTCAATGCTTACAAGGAGGCGCGTACGACGTCGA
AAGCCAGCTGGATCTCGTATAGTTTTGGAGCGGGATCGGAACAATAGATT
GTTAACTGTGTCCATTCCTCCGAAAGGCATATCAAGTGAAGCATTATCAC
GAGGAGCCTTCACCGTTGCGTGGACTGGGTTCACGGCATTTTGGACGTTA
GGAGTGCTTACGGGTGGAGCACCGATCATCTTTTCACTGTTTAGCCTTCC
GTTTTGGGCTGCTGGTTATCGTTTTGCTCGGAGTACTGCAGATGAAATAA
CTGGTTCGACCGATATCGTGATTAGTTTTGGTGGTGGTGATCGAAAGGTT
TTCTATTTCGGACTGTCTTCCAAGAGTGCTCTTGGACAAGGTGTATTTGT
AGAGGGAGATGCGCGGGATCTTGACCGAACTTCCATGGAAACTGAAATGT
ATGTGAATGGAAGGCCTGTTGCCGAACTAGTCTTGAACGAAGGAACCAGA
AGGCATGTATTCGGTGAGGCATTGGATCCGGTTGAACAAGAATGGTTACG
TGATGAAATAAATGACTTTATTGGCAGCCAGAACGGACGGTCTCGCTGA

protein sequence of Ggra8892.t1

>Ggra8892.t1 ID=Ggra8892.t1|Name=Ggra8892.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=583bp
MGHLWREQTRTENAVTDPQKPCAVAFQVPISLSTYQSLYISKKCAHRKPK
VPKRPRCCPYRRLRLSSSFERDEVINDYRVVDVIGRGTTGLTYEAIATRG
PYRSKRLALKALSVRSLTNWKTLDLFQREARTLKSLSHPSIPNYVDFFEF
ETEKDTAYILVQKKAEGTALQTLIDEGYRFSTEQVKQTFIKLLEVLSYLA
SLNPPVLHCDIKPANIIVDLSNSDVALSLVDFGGVRTGVTTPGSTLVGTY
GFMAPEQFTGLADVRSDMYAAAATILCMLTSQPPSALPQKRLKIDLATVI
PKREQVKLGNIYSVMAKLLEPAPEDRYDSPSEALAVLNGTTIDRVSSLHS
VPNLLKVTSSLSPEDTTSLQDALANMNTSEPKSNALQMLSMLTRRRVRRR
KPAGSRIVLERDRNNRLLTVSIPPKGISSEALSRGAFTVAWTGFTAFWTL
GVLTGGAPIIFSLFSLPFWAAGYRFARSTADEITGSTDIVISFGGGDRKV
FYFGLSSKSALGQGVFVEGDARDLDRTSMETEMYVNGRPVAELVLNEGTR
RHVFGEALDPVEQEWLRDEINDFIGSQNGRSR*

mRNA from alignment at tig00000860_pilon:669013..670761-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8892.t1 ID=Ggra8892.t1|Name=Ggra8892.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1749bp|location=Sequence derived from alignment at tig00000860_pilon:669013..670761- (Gracilaria gracilis GNS1m male)
ATGGGTCATCTTTGGAGGGAACAAACAAGGACAGAAAACGCTGTAACAGA
TCCTCAGAAACCTTGTGCTGTGGCTTTTCAGGTTCCGATATCTCTTTCCA
CATATCAGTCTCTCTACATTTCTAAGAAGTGTGCACATCGAAAGCCAAAA
GTACCTAAGCGGCCTCGGTGCTGTCCATACCGTCGCCTGCGCCTGTCCTC
TTCGTTCGAGCGGGATGAGGTCATCAATGATTACCGAGTTGTTGATGTAA
TCGGCCGAGGAACAACCGGTCTCACTTACGAAGCTATAGCGACAAGGGGA
CCCTATCGCTCTAAGCGATTGGCATTGAAAGCACTTTCAGTTCGGTCCCT
TACTAATTGGAAAACACTGGACCTTTTCCAAAGAGAGGCGAGAACTCTTA
AATCCCTCTCACATCCGTCGATTCCAAACTATGTGGACTTTTTCGAGTTC
GAAACAGAAAAGGACACTGCATACATTCTAGTCCAGAAAAAAGCGGAAGG
AACAGCACTTCAGACACTCATAGATGAAGGCTATCGATTTTCTACAGAGC
AAGTCAAGCAAACCTTCATCAAGCTTCTGGAAGTGCTTTCTTATCTAGCA
TCCCTTAATCCCCCAGTTCTTCATTGTGATATAAAACCGGCAAACATTAT
TGTGGATCTTAGCAATTCCGATGTAGCACTCTCATTGGTTGACTTTGGTG
GTGTGAGAACGGGTGTAACAACGCCGGGGTCAACTTTGGTTGGTACTTAC
GGCTTTATGGCCCCGGAACAATTCACAGGGCTTGCAGATGTGCGAAGCGA
CATGTATGCCGCAGCAGCCACTATTCTTTGCATGCTGACCTCCCAACCAC
CGTCCGCTCTTCCGCAGAAACGTCTGAAGATAGACTTGGCGACTGTGATT
CCTAAGAGAGAACAGGTCAAACTTGGAAATATTTACTCCGTGATGGCCAA
ACTCCTGGAACCAGCTCCGGAAGATCGATACGACAGCCCGTCAGAAGCCT
TAGCGGTATTGAACGGCACAACCATCGATCGAGTGTCCTCGCTCCATTCT
GTCCCGAATTTGCTCAAAGTTACTTCAAGCCTAAGTCCTGAAGACACCAC
ATCTCTACAGGACGCGCTAGCAAATATGAACACAAGTGAGCCGAAGTCAA
ACGCGTTGCAAATGTTGTCAATGCTTACAAGGAGGCGCGTACGACGTCGA
AAGCCAGCTGGATCTCGTATAGTTTTGGAGCGGGATCGGAACAATAGATT
GTTAACTGTGTCCATTCCTCCGAAAGGCATATCAAGTGAAGCATTATCAC
GAGGAGCCTTCACCGTTGCGTGGACTGGGTTCACGGCATTTTGGACGTTA
GGAGTGCTTACGGGTGGAGCACCGATCATCTTTTCACTGTTTAGCCTTCC
GTTTTGGGCTGCTGGTTATCGTTTTGCTCGGAGTACTGCAGATGAAATAA
CTGGTTCGACCGATATCGTGATTAGTTTTGGTGGTGGTGATCGAAAGGTT
TTCTATTTCGGACTGTCTTCCAAGAGTGCTCTTGGACAAGGTGTATTTGT
AGAGGGAGATGCGCGGGATCTTGACCGAACTTCCATGGAAACTGAAATGT
ATGTGAATGGAAGGCCTGTTGCCGAACTAGTCTTGAACGAAGGAACCAGA
AGGCATGTATTCGGTGAGGCATTGGATCCGGTTGAACAAGAATGGTTACG
TGATGAAATAAATGACTTTATTGGCAGCCAGAACGGACGGTCTCGCTGA

Coding sequence (CDS) from alignment at tig00000860_pilon:669013..670761-

>Ggra8892.t1 ID=Ggra8892.t1|Name=Ggra8892.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1749bp|location=Sequence derived from alignment at tig00000860_pilon:669013..670761- (Gracilaria gracilis GNS1m male)
ATGGGTCATCTTTGGAGGGAACAAACAAGGACAGAAAACGCTGTAACAGA
TCCTCAGAAACCTTGTGCTGTGGCTTTTCAGGTTCCGATATCTCTTTCCA
CATATCAGTCTCTCTACATTTCTAAGAAGTGTGCACATCGAAAGCCAAAA
GTACCTAAGCGGCCTCGGTGCTGTCCATACCGTCGCCTGCGCCTGTCCTC
TTCGTTCGAGCGGGATGAGGTCATCAATGATTACCGAGTTGTTGATGTAA
TCGGCCGAGGAACAACCGGTCTCACTTACGAAGCTATAGCGACAAGGGGA
CCCTATCGCTCTAAGCGATTGGCATTGAAAGCACTTTCAGTTCGGTCCCT
TACTAATTGGAAAACACTGGACCTTTTCCAAAGAGAGGCGAGAACTCTTA
AATCCCTCTCACATCCGTCGATTCCAAACTATGTGGACTTTTTCGAGTTC
GAAACAGAAAAGGACACTGCATACATTCTAGTCCAGAAAAAAGCGGAAGG
AACAGCACTTCAGACACTCATAGATGAAGGCTATCGATTTTCTACAGAGC
AAGTCAAGCAAACCTTCATCAAGCTTCTGGAAGTGCTTTCTTATCTAGCA
TCCCTTAATCCCCCAGTTCTTCATTGTGATATAAAACCGGCAAACATTAT
TGTGGATCTTAGCAATTCCGATGTAGCACTCTCATTGGTTGACTTTGGTG
GTGTGAGAACGGGTGTAACAACGCCGGGGTCAACTTTGGTTGGTACTTAC
GGCTTTATGGCCCCGGAACAATTCACAGGGCTTGCAGATGTGCGAAGCGA
CATGTATGCCGCAGCAGCCACTATTCTTTGCATGCTGACCTCCCAACCAC
CGTCCGCTCTTCCGCAGAAACGTCTGAAGATAGACTTGGCGACTGTGATT
CCTAAGAGAGAACAGGTCAAACTTGGAAATATTTACTCCGTGATGGCCAA
ACTCCTGGAACCAGCTCCGGAAGATCGATACGACAGCCCGTCAGAAGCCT
TAGCGGTATTGAACGGCACAACCATCGATCGAGTGTCCTCGCTCCATTCT
GTCCCGAATTTGCTCAAAGTTACTTCAAGCCTAAGTCCTGAAGACACCAC
ATCTCTACAGGACGCGCTAGCAAATATGAACACAAGTGAGCCGAAGTCAA
ACGCGTTGCAAATGTTGTCAATGCTTACAAGGAGGCGCGTACGACGTCGA
AAGCCAGCTGGATCTCGTATAGTTTTGGAGCGGGATCGGAACAATAGATT
GTTAACTGTGTCCATTCCTCCGAAAGGCATATCAAGTGAAGCATTATCAC
GAGGAGCCTTCACCGTTGCGTGGACTGGGTTCACGGCATTTTGGACGTTA
GGAGTGCTTACGGGTGGAGCACCGATCATCTTTTCACTGTTTAGCCTTCC
GTTTTGGGCTGCTGGTTATCGTTTTGCTCGGAGTACTGCAGATGAAATAA
CTGGTTCGACCGATATCGTGATTAGTTTTGGTGGTGGTGATCGAAAGGTT
TTCTATTTCGGACTGTCTTCCAAGAGTGCTCTTGGACAAGGTGTATTTGT
AGAGGGAGATGCGCGGGATCTTGACCGAACTTCCATGGAAACTGAAATGT
ATGTGAATGGAAGGCCTGTTGCCGAACTAGTCTTGAACGAAGGAACCAGA
AGGCATGTATTCGGTGAGGCATTGGATCCGGTTGAACAAGAATGGTTACG
TGATGAAATAAATGACTTTATTGGCAGCCAGAACGGACGGTCTCGCTGA