Ggra8891.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8891.t1
Unique NameGgra8891.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length350
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:665716..666879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8891Ggra8891Gracilaria gracilis GNS1m malegenetig00000860_pilon 665716..666879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8891.t1Ggra8891.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 665716..666879 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8891.t1.start1Ggra8891.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 665716..665718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8891.t1.CDS1Ggra8891.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 665716..666207 +
Ggra8891.t1.CDS2Ggra8891.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 666322..666879 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8891.t1.exon1Ggra8891.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 665716..666207 +
Ggra8891.t1.exon2Ggra8891.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 666322..666879 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8891.t1.intron1Ggra8891.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 666208..666321 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8891.t1.stop1Ggra8891.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 666877..666879 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8891.t1 ID=Ggra8891.t1|Name=Ggra8891.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=350bp
MSLDAIIYVVVALAIALAALVLLTFLYFQRRRQRTMLLLALAQEEAERRR
RKKKKVALRRWEIDHAAPEVLVYRVAAQPAQHKLTLQSDPEQYADAIISL
RSAGHLPPEQTPPSLSVQPSVTEPPSTLNGTVTSDTQLPQVLVAIPPAES
NCVICLESIIVGQRRSNNQSSLAVISDRPVTLEPTYPPRPNDRGESTTLQ
NTLSRDKSSFLSRQSDDMSLDRFNSDTTSQLDDQNTAELLSQVRSALRGQ
SSMLSIGTTCSAAPSDILPVPQLPSNPLPDSNDVLRPEDEQLRHSSMPVE
QSISSSAQPAPDLPETEANERQAAADIEAITPSPHANLRSISTSGIGNN*
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spliced messenger RNA

>Ggra8891.t1 ID=Ggra8891.t1|Name=Ggra8891.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1050bp|location=Sequence derived from alignment at tig00000860_pilon:665716..666879+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTGGATGCCATCATCTACGTCGTTGTCGCGTTGGCCATTGCCTT
GGCCGCGCTTGTACTGCTCACCTTTCTATACTTCCAGCGCAGACGGCAGA
GAACCATGCTGCTTCTCGCGCTGGCGCAAGAGGAAGCTGAGCGCCGCCGA
CGGAAGAAGAAGAAAGTCGCTTTGCGTCGCTGGGAAATTGATCACGCTGC
TCCTGAAGTCCTGGTATATCGAGTCGCTGCACAGCCCGCTCAACATAAAC
TCACGCTGCAATCTGACCCCGAGCAGTACGCCGATGCCATAATTTCGCTT
CGTTCAGCAGGCCACTTGCCGCCCGAACAAACCCCCCCATCATTATCGGT
ACAGCCTTCAGTTACTGAACCCCCGTCAACCTTAAACGGCACTGTCACAA
GTGACACCCAGCTCCCACAAGTTTTAGTGGCCATCCCGCCTGCGGAAAGC
AATTGCGTCATTTGTCTCGAGTCAATCATTGTCGGACAGAGGCGCTCCAA
CAATCAATCATCTCTTGCAGTCATTTCAGATCGCCCTGTTACCCTTGAGC
CAACGTATCCGCCAAGACCCAATGATCGAGGTGAGAGCACCACTTTGCAA
AACACGCTGTCGAGAGACAAAAGCAGTTTTCTTTCCCGTCAGTCGGATGA
CATGAGTTTGGATCGCTTTAATTCTGACACAACAAGTCAGCTGGATGATC
AAAACACCGCCGAGTTGCTGTCGCAGGTACGCAGTGCATTGAGAGGCCAA
TCTTCTATGCTCAGCATTGGCACTACTTGCAGTGCGGCACCGTCCGACAT
ATTACCTGTTCCCCAGCTGCCTTCCAATCCACTCCCAGACTCCAATGACG
TATTGCGTCCGGAAGACGAGCAGTTGCGACACTCATCCATGCCAGTTGAG
CAGTCAATATCGTCTTCTGCACAACCTGCTCCGGATCTACCTGAGACTGA
AGCGAATGAAAGGCAAGCGGCTGCAGATATCGAAGCAATCACACCTTCGC
CTCACGCTAATCTGCGGAGCATTTCAACGTCGGGAATTGGAAATAATTAA
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protein sequence of Ggra8891.t1

>Ggra8891.t1 ID=Ggra8891.t1|Name=Ggra8891.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=350bp
MSLDAIIYVVVALAIALAALVLLTFLYFQRRRQRTMLLLALAQEEAERRR
RKKKKVALRRWEIDHAAPEVLVYRVAAQPAQHKLTLQSDPEQYADAIISL
RSAGHLPPEQTPPSLSVQPSVTEPPSTLNGTVTSDTQLPQVLVAIPPAES
NCVICLESIIVGQRRSNNQSSLAVISDRPVTLEPTYPPRPNDRGESTTLQ
NTLSRDKSSFLSRQSDDMSLDRFNSDTTSQLDDQNTAELLSQVRSALRGQ
SSMLSIGTTCSAAPSDILPVPQLPSNPLPDSNDVLRPEDEQLRHSSMPVE
QSISSSAQPAPDLPETEANERQAAADIEAITPSPHANLRSISTSGIGNN*
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mRNA from alignment at tig00000860_pilon:665716..666879+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8891.t1 ID=Ggra8891.t1|Name=Ggra8891.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00000860_pilon:665716..666879+ (Gracilaria gracilis GNS1m male)
ATGTCGCTGGATGCCATCATCTACGTCGTTGTCGCGTTGGCCATTGCCTT
GGCCGCGCTTGTACTGCTCACCTTTCTATACTTCCAGCGCAGACGGCAGA
GAACCATGCTGCTTCTCGCGCTGGCGCAAGAGGAAGCTGAGCGCCGCCGA
CGGAAGAAGAAGAAAGTCGCTTTGCGTCGCTGGGAAATTGATCACGCTGC
TCCTGAAGTCCTGGTATATCGAGTCGCTGCACAGCCCGCTCAACATAAAC
TCACGCTGCAATCTGACCCCGAGCAGTACGCCGATGCCATAATTTCGCTT
CGTTCAGCAGGCCACTTGCCGCCCGAACAAACCCCCCCATCATTATCGGT
ACAGCCTTCAGTTACTGAACCCCCGTCAACCTTAAACGGCACTGTCACAA
GTGACACCCAGCTCCCACAAGTTTTAGTGGCCATCCCGCCTGCGGAAAGC
AATTGCGTCATTTGTCTCGAGTCAATCATTGTCGGACAGAGGGTAAGAAC
CTTACCATGCGATCATATCTATCACAGTCAATGCATTCGCGTCTGGCTCC
GCCGAAAGAACGCCTGTCCTTGCTGTTGTCATCGCGTTTTCGCTCGAAGA
CGGAAGCGCTCCAACAATCAATCATCTCTTGCAGTCATTTCAGATCGCCC
TGTTACCCTTGAGCCAACGTATCCGCCAAGACCCAATGATCGAGGTGAGA
GCACCACTTTGCAAAACACGCTGTCGAGAGACAAAAGCAGTTTTCTTTCC
CGTCAGTCGGATGACATGAGTTTGGATCGCTTTAATTCTGACACAACAAG
TCAGCTGGATGATCAAAACACCGCCGAGTTGCTGTCGCAGGTACGCAGTG
CATTGAGAGGCCAATCTTCTATGCTCAGCATTGGCACTACTTGCAGTGCG
GCACCGTCCGACATATTACCTGTTCCCCAGCTGCCTTCCAATCCACTCCC
AGACTCCAATGACGTATTGCGTCCGGAAGACGAGCAGTTGCGACACTCAT
CCATGCCAGTTGAGCAGTCAATATCGTCTTCTGCACAACCTGCTCCGGAT
CTACCTGAGACTGAAGCGAATGAAAGGCAAGCGGCTGCAGATATCGAAGC
AATCACACCTTCGCCTCACGCTAATCTGCGGAGCATTTCAACGTCGGGAA
TTGGAAATAATTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:665716..666879+

>Ggra8891.t1 ID=Ggra8891.t1|Name=Ggra8891.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1050bp|location=Sequence derived from alignment at tig00000860_pilon:665716..666879+ (Gracilaria gracilis GNS1m male)
ATGTCGCTGGATGCCATCATCTACGTCGTTGTCGCGTTGGCCATTGCCTT
GGCCGCGCTTGTACTGCTCACCTTTCTATACTTCCAGCGCAGACGGCAGA
GAACCATGCTGCTTCTCGCGCTGGCGCAAGAGGAAGCTGAGCGCCGCCGA
CGGAAGAAGAAGAAAGTCGCTTTGCGTCGCTGGGAAATTGATCACGCTGC
TCCTGAAGTCCTGGTATATCGAGTCGCTGCACAGCCCGCTCAACATAAAC
TCACGCTGCAATCTGACCCCGAGCAGTACGCCGATGCCATAATTTCGCTT
CGTTCAGCAGGCCACTTGCCGCCCGAACAAACCCCCCCATCATTATCGGT
ACAGCCTTCAGTTACTGAACCCCCGTCAACCTTAAACGGCACTGTCACAA
GTGACACCCAGCTCCCACAAGTTTTAGTGGCCATCCCGCCTGCGGAAAGC
AATTGCGTCATTTGTCTCGAGTCAATCATTGTCGGACAGAGGCGCTCCAA
CAATCAATCATCTCTTGCAGTCATTTCAGATCGCCCTGTTACCCTTGAGC
CAACGTATCCGCCAAGACCCAATGATCGAGGTGAGAGCACCACTTTGCAA
AACACGCTGTCGAGAGACAAAAGCAGTTTTCTTTCCCGTCAGTCGGATGA
CATGAGTTTGGATCGCTTTAATTCTGACACAACAAGTCAGCTGGATGATC
AAAACACCGCCGAGTTGCTGTCGCAGGTACGCAGTGCATTGAGAGGCCAA
TCTTCTATGCTCAGCATTGGCACTACTTGCAGTGCGGCACCGTCCGACAT
ATTACCTGTTCCCCAGCTGCCTTCCAATCCACTCCCAGACTCCAATGACG
TATTGCGTCCGGAAGACGAGCAGTTGCGACACTCATCCATGCCAGTTGAG
CAGTCAATATCGTCTTCTGCACAACCTGCTCCGGATCTACCTGAGACTGA
AGCGAATGAAAGGCAAGCGGCTGCAGATATCGAAGCAATCACACCTTCGC
CTCACGCTAATCTGCGGAGCATTTCAACGTCGGGAATTGGAAATAATTAA
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