Ggra8886.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8886.t1
Unique NameGgra8886.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length414
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:649395..650636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3641.EOY24999
PFAMsDNA_primase_S
Max annot lvl35493|Streptophyta
KEGG rclassRC02795
KEGG koko:K02684
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,map00230,map00240,map01100,map03030
KEGG ModuleM00261
GOsGO:0000228,GO:0000428,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0003896,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005658,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0030894,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0032993,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
Evalue1.72e-92
EggNOG OGsCOG1467@1|root,KOG2851@2759|Eukaryota,37JAS@33090|Viridiplantae,3GF6Z@35493|Streptophyta
DescriptionBelongs to the eukaryotic-type primase small subunit family
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8886Ggra8886Gracilaria gracilis GNS1m malegenetig00000860_pilon 649395..650636 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8886.t1.stop1Ggra8886.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 649395..649397 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8886.t1.CDS1Ggra8886.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 649395..650636 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8886.t1.exon1Ggra8886.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 649395..650636 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8886.t1.start1Ggra8886.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 650634..650636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8886.t1Ggra8886.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 649395..650636 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8886.t1 ID=Ggra8886.t1|Name=Ggra8886.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=414bp
MPAPSAPPATDLPAKLRWYYARLFPLHLFTRWLRFGSDQTLSHREISFTL
AGDIYIRWKSFTDHHQLLQNLKTRAPVKIDIGAVYNQPPANKHALQVGLA
PVQKELVFDIDITDYEDVINHAPNMSATQVCDQNWQYMALAARVIDAALR
QDFGFRNIMWVYSGRRGIHCWVADHRARFMTNEQRSAVADYLHLRFEGRD
NRGRRQTQVTSPLHPSLKRAKRLCEPVFAEMLVKQRLLDDEQALCDMLQH
IPNGAVRADLLARLRHMHGTPLQKWQRIEKELNKASRSDFSLRSTPDYIV
FRYTYPRLDVNVSREMNHLLKAPFCVHPKTGRVCVPFRVENAEQFEPHAM
APQLDGLLAEIESGAGPMSDRLNEAVAVFEQFVHGCEQELRDRHRRERLD
QIDRQNVADVMKN*
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spliced messenger RNA

>Ggra8886.t1 ID=Ggra8886.t1|Name=Ggra8886.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000860_pilon:649395..650636- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGCCCCGTCCGCACCGCCCGCCACCGACCTGCCAGCCAAGCTCCG
CTGGTACTACGCCCGTCTCTTCCCGCTGCACCTCTTCACGCGCTGGCTGC
GCTTCGGCTCCGACCAAACCCTCTCGCACCGCGAGATCTCCTTCACGCTC
GCGGGCGACATCTACATCCGCTGGAAGTCCTTCACCGACCACCACCAGCT
GCTGCAAAACCTCAAGACCCGCGCCCCCGTCAAGATCGACATTGGCGCCG
TGTACAACCAGCCGCCGGCCAATAAACATGCGCTGCAGGTCGGTCTGGCC
CCCGTGCAAAAGGAGCTTGTGTTTGACATTGATATCACCGACTACGAAGA
CGTCATCAACCACGCGCCCAACATGTCCGCCACTCAGGTGTGCGACCAAA
ACTGGCAGTACATGGCGCTGGCCGCGCGCGTCATAGACGCCGCCCTCAGG
CAAGACTTTGGCTTCCGCAACATCATGTGGGTGTACTCGGGCAGAAGGGG
CATCCATTGTTGGGTAGCCGACCATCGCGCACGCTTCATGACCAACGAAC
AGCGATCGGCCGTAGCAGACTACCTCCACCTGCGCTTCGAGGGGCGAGAC
AACCGCGGCCGTAGACAAACGCAAGTCACAAGCCCGCTGCACCCCAGTCT
CAAGCGCGCAAAGCGGCTGTGCGAGCCGGTGTTCGCCGAAATGCTCGTCA
AACAACGGCTGCTAGACGACGAGCAGGCGCTGTGCGACATGCTGCAGCAC
ATCCCCAACGGCGCGGTGCGCGCCGACCTGCTGGCGCGCCTGCGCCACAT
GCACGGCACGCCGCTGCAAAAGTGGCAGCGCATCGAGAAAGAGCTCAACA
AGGCCAGTCGCAGCGACTTTTCGCTGCGCTCCACGCCGGATTACATTGTG
TTTCGCTACACGTACCCGCGCCTGGACGTCAACGTCAGCCGCGAGATGAA
CCATCTGCTCAAGGCGCCGTTCTGCGTGCACCCCAAGACGGGGCGCGTGT
GCGTGCCGTTCCGCGTCGAGAACGCCGAGCAGTTCGAGCCGCACGCCATG
GCGCCGCAGCTGGATGGGCTGCTGGCGGAGATTGAGAGCGGCGCCGGCCC
GATGAGCGACAGGTTGAACGAGGCCGTGGCCGTTTTTGAGCAGTTTGTGC
ACGGTTGCGAGCAGGAGCTCCGCGATAGGCATCGGCGCGAGCGCTTGGAT
CAAATCGATCGCCAGAACGTAGCAGACGTGATGAAGAACTGA
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protein sequence of Ggra8886.t1

>Ggra8886.t1 ID=Ggra8886.t1|Name=Ggra8886.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=414bp
MPAPSAPPATDLPAKLRWYYARLFPLHLFTRWLRFGSDQTLSHREISFTL
AGDIYIRWKSFTDHHQLLQNLKTRAPVKIDIGAVYNQPPANKHALQVGLA
PVQKELVFDIDITDYEDVINHAPNMSATQVCDQNWQYMALAARVIDAALR
QDFGFRNIMWVYSGRRGIHCWVADHRARFMTNEQRSAVADYLHLRFEGRD
NRGRRQTQVTSPLHPSLKRAKRLCEPVFAEMLVKQRLLDDEQALCDMLQH
IPNGAVRADLLARLRHMHGTPLQKWQRIEKELNKASRSDFSLRSTPDYIV
FRYTYPRLDVNVSREMNHLLKAPFCVHPKTGRVCVPFRVENAEQFEPHAM
APQLDGLLAEIESGAGPMSDRLNEAVAVFEQFVHGCEQELRDRHRRERLD
QIDRQNVADVMKN*
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mRNA from alignment at tig00000860_pilon:649395..650636-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8886.t1 ID=Ggra8886.t1|Name=Ggra8886.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000860_pilon:649395..650636- (Gracilaria gracilis GNS1m male)
ATGCCGGCCCCGTCCGCACCGCCCGCCACCGACCTGCCAGCCAAGCTCCG
CTGGTACTACGCCCGTCTCTTCCCGCTGCACCTCTTCACGCGCTGGCTGC
GCTTCGGCTCCGACCAAACCCTCTCGCACCGCGAGATCTCCTTCACGCTC
GCGGGCGACATCTACATCCGCTGGAAGTCCTTCACCGACCACCACCAGCT
GCTGCAAAACCTCAAGACCCGCGCCCCCGTCAAGATCGACATTGGCGCCG
TGTACAACCAGCCGCCGGCCAATAAACATGCGCTGCAGGTCGGTCTGGCC
CCCGTGCAAAAGGAGCTTGTGTTTGACATTGATATCACCGACTACGAAGA
CGTCATCAACCACGCGCCCAACATGTCCGCCACTCAGGTGTGCGACCAAA
ACTGGCAGTACATGGCGCTGGCCGCGCGCGTCATAGACGCCGCCCTCAGG
CAAGACTTTGGCTTCCGCAACATCATGTGGGTGTACTCGGGCAGAAGGGG
CATCCATTGTTGGGTAGCCGACCATCGCGCACGCTTCATGACCAACGAAC
AGCGATCGGCCGTAGCAGACTACCTCCACCTGCGCTTCGAGGGGCGAGAC
AACCGCGGCCGTAGACAAACGCAAGTCACAAGCCCGCTGCACCCCAGTCT
CAAGCGCGCAAAGCGGCTGTGCGAGCCGGTGTTCGCCGAAATGCTCGTCA
AACAACGGCTGCTAGACGACGAGCAGGCGCTGTGCGACATGCTGCAGCAC
ATCCCCAACGGCGCGGTGCGCGCCGACCTGCTGGCGCGCCTGCGCCACAT
GCACGGCACGCCGCTGCAAAAGTGGCAGCGCATCGAGAAAGAGCTCAACA
AGGCCAGTCGCAGCGACTTTTCGCTGCGCTCCACGCCGGATTACATTGTG
TTTCGCTACACGTACCCGCGCCTGGACGTCAACGTCAGCCGCGAGATGAA
CCATCTGCTCAAGGCGCCGTTCTGCGTGCACCCCAAGACGGGGCGCGTGT
GCGTGCCGTTCCGCGTCGAGAACGCCGAGCAGTTCGAGCCGCACGCCATG
GCGCCGCAGCTGGATGGGCTGCTGGCGGAGATTGAGAGCGGCGCCGGCCC
GATGAGCGACAGGTTGAACGAGGCCGTGGCCGTTTTTGAGCAGTTTGTGC
ACGGTTGCGAGCAGGAGCTCCGCGATAGGCATCGGCGCGAGCGCTTGGAT
CAAATCGATCGCCAGAACGTAGCAGACGTGATGAAGAACTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:649395..650636-

>Ggra8886.t1 ID=Ggra8886.t1|Name=Ggra8886.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1242bp|location=Sequence derived from alignment at tig00000860_pilon:649395..650636- (Gracilaria gracilis GNS1m male)
ATGCCGGCCCCGTCCGCACCGCCCGCCACCGACCTGCCAGCCAAGCTCCG
CTGGTACTACGCCCGTCTCTTCCCGCTGCACCTCTTCACGCGCTGGCTGC
GCTTCGGCTCCGACCAAACCCTCTCGCACCGCGAGATCTCCTTCACGCTC
GCGGGCGACATCTACATCCGCTGGAAGTCCTTCACCGACCACCACCAGCT
GCTGCAAAACCTCAAGACCCGCGCCCCCGTCAAGATCGACATTGGCGCCG
TGTACAACCAGCCGCCGGCCAATAAACATGCGCTGCAGGTCGGTCTGGCC
CCCGTGCAAAAGGAGCTTGTGTTTGACATTGATATCACCGACTACGAAGA
CGTCATCAACCACGCGCCCAACATGTCCGCCACTCAGGTGTGCGACCAAA
ACTGGCAGTACATGGCGCTGGCCGCGCGCGTCATAGACGCCGCCCTCAGG
CAAGACTTTGGCTTCCGCAACATCATGTGGGTGTACTCGGGCAGAAGGGG
CATCCATTGTTGGGTAGCCGACCATCGCGCACGCTTCATGACCAACGAAC
AGCGATCGGCCGTAGCAGACTACCTCCACCTGCGCTTCGAGGGGCGAGAC
AACCGCGGCCGTAGACAAACGCAAGTCACAAGCCCGCTGCACCCCAGTCT
CAAGCGCGCAAAGCGGCTGTGCGAGCCGGTGTTCGCCGAAATGCTCGTCA
AACAACGGCTGCTAGACGACGAGCAGGCGCTGTGCGACATGCTGCAGCAC
ATCCCCAACGGCGCGGTGCGCGCCGACCTGCTGGCGCGCCTGCGCCACAT
GCACGGCACGCCGCTGCAAAAGTGGCAGCGCATCGAGAAAGAGCTCAACA
AGGCCAGTCGCAGCGACTTTTCGCTGCGCTCCACGCCGGATTACATTGTG
TTTCGCTACACGTACCCGCGCCTGGACGTCAACGTCAGCCGCGAGATGAA
CCATCTGCTCAAGGCGCCGTTCTGCGTGCACCCCAAGACGGGGCGCGTGT
GCGTGCCGTTCCGCGTCGAGAACGCCGAGCAGTTCGAGCCGCACGCCATG
GCGCCGCAGCTGGATGGGCTGCTGGCGGAGATTGAGAGCGGCGCCGGCCC
GATGAGCGACAGGTTGAACGAGGCCGTGGCCGTTTTTGAGCAGTTTGTGC
ACGGTTGCGAGCAGGAGCTCCGCGATAGGCATCGGCGCGAGCGCTTGGAT
CAAATCGATCGCCAGAACGTAGCAGACGTGATGAAGAACTGA
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