Ggra8885.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8885.t1
Unique NameGgra8885.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length104
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:648481..648909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX41598
PFAMsCENP-T_C
Max annot lvl2759|Eukaryota
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
Evalue3.81e-61
EggNOG OGsCOG2036@1|root,KOG3467@2759|Eukaryota
Descriptionprotein heterodimerization activity
COG categoryB
BRITEko00000,ko00001,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8885Ggra8885Gracilaria gracilis GNS1m malegenetig00000860_pilon 648481..648909 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8885.t1Ggra8885.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 648481..648909 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8885.t1.stop1Ggra8885.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 648481..648483 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8885.t1.CDS1Ggra8885.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 648481..648764 -
Ggra8885.t1.CDS2Ggra8885.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 648882..648909 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8885.t1.exon1Ggra8885.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 648481..648764 -
Ggra8885.t1.exon2Ggra8885.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 648882..648909 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8885.t1.intron1Ggra8885.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 648765..648881 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8885.t1.start1Ggra8885.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 648907..648909 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8885.t1 ID=Ggra8885.t1|Name=Ggra8885.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRNVLKVFLESVIRDAVTYTEHARRKTVVSMDVVYALKRQGRTLYG
FGS*
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spliced messenger RNA

>Ggra8885.t1 ID=Ggra8885.t1|Name=Ggra8885.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=312bp|location=Sequence derived from alignment at tig00000860_pilon:648481..648909- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGGTCGTGGAAAAGGTGGAAAAGGATTGGGAAAGGGAGGTGCCAA
GCGCCATCGCAAGGTGTTGAGGGATAACATCCAGGGAATCACAAAGCCTG
CCATTCGTCGTCTCGCGCGCAGAGGAGGTGTCAAGCGTATTTCTGGTCTC
ATCTACGAGGAGACTCGAAACGTCCTCAAGGTCTTCCTGGAGTCGGTCAT
CCGTGACGCCGTCACTTACACTGAGCACGCGCGCAGAAAGACCGTCGTGT
CTATGGACGTGGTGTACGCTCTCAAGAGACAGGGCAGGACTCTTTATGGC
TTCGGCAGTTAA
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protein sequence of Ggra8885.t1

>Ggra8885.t1 ID=Ggra8885.t1|Name=Ggra8885.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRNVLKVFLESVIRDAVTYTEHARRKTVVSMDVVYALKRQGRTLYG
FGS*
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mRNA from alignment at tig00000860_pilon:648481..648909-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8885.t1 ID=Ggra8885.t1|Name=Ggra8885.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=429bp|location=Sequence derived from alignment at tig00000860_pilon:648481..648909- (Gracilaria gracilis GNS1m male)
ATGTCTGGTCGTGGAAAAGGTGGAAAAGGTTCGTTCTATGCACTTGTTTC
CGTTCTCGCATTCAAAAAACGTTCTTCTCTCACGTCTTTTTTTTAAATGT
GCTGACAAATCAATCCGCTCTTTCATACTAATTATTGTTGTGCAGGATTG
GGAAAGGGAGGTGCCAAGCGCCATCGCAAGGTGTTGAGGGATAACATCCA
GGGAATCACAAAGCCTGCCATTCGTCGTCTCGCGCGCAGAGGAGGTGTCA
AGCGTATTTCTGGTCTCATCTACGAGGAGACTCGAAACGTCCTCAAGGTC
TTCCTGGAGTCGGTCATCCGTGACGCCGTCACTTACACTGAGCACGCGCG
CAGAAAGACCGTCGTGTCTATGGACGTGGTGTACGCTCTCAAGAGACAGG
GCAGGACTCTTTATGGCTTCGGCAGTTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:648481..648909-

>Ggra8885.t1 ID=Ggra8885.t1|Name=Ggra8885.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=312bp|location=Sequence derived from alignment at tig00000860_pilon:648481..648909- (Gracilaria gracilis GNS1m male)
ATGTCTGGTCGTGGAAAAGGTGGAAAAGGATTGGGAAAGGGAGGTGCCAA
GCGCCATCGCAAGGTGTTGAGGGATAACATCCAGGGAATCACAAAGCCTG
CCATTCGTCGTCTCGCGCGCAGAGGAGGTGTCAAGCGTATTTCTGGTCTC
ATCTACGAGGAGACTCGAAACGTCCTCAAGGTCTTCCTGGAGTCGGTCAT
CCGTGACGCCGTCACTTACACTGAGCACGCGCGCAGAAAGACCGTCGTGT
CTATGGACGTGGTGTACGCTCTCAAGAGACAGGGCAGGACTCTTTATGGC
TTCGGCAGTTAA
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