Ggra8884.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8884.t1
Unique Name	Ggra8884.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	689

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:644508..646574 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8884	Ggra8884	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 644508..646574 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8884.t1.start1	Ggra8884.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 644508..644510 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8884.t1.CDS1	Ggra8884.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 644508..646574 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8884.t1.exon1	Ggra8884.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 644508..646574 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8884.t1.stop1	Ggra8884.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 646572..646574 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8884.t1	Ggra8884.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 644508..646574 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:644508..646574+
coding sequence from alignment at tig00000860_pilon:644508..646574+

mRNA sequence

>Ggra8884.t1 ID=Ggra8884.t1|Name=Ggra8884.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=689bp
MRDREQQGNEDQSSPLEQTPNSFAIASANMHTKPPRRTTNMKRSLNCTNS
LSDPSSKMRRVQEVSPSPFPSKGPGSSGNVGERVRNAIGEAQDKIAAGNP
RANDAGGYHNSSVSHILYREDRKHSSHNVFTQKWYDGLQESIAKKRFEVP
KNVLMPAYFAIEDHLHNSLFSSSGAESEEADLLYQVLAFVQNISNEFLHV
MGDTEKLDVKAPEKHMMHIWKKIRGVSEMLETRYDLLLFRRRGYKLQAKM
LESYCVPPVGDSILAKTVFREVRNVGHGEDAVVSAEYARTKATRISIPKP
LRVPSEKGNDKRNLPESSVRHEQLGDDPTGGSNVALHLQNTRGKQCKSSN
PGIINSAENVAVEVIGEECSVVHEEDFEKSRYRETQIPSHLLSLHGLARI
PGESKPILPLAMSRVLVEQMRKDERDGVVAVPPRPEWQSVQVVALSDEKE
QSKSNIAKPLPRLQMKTQESLPPKNHAVERGVEVVQRDEHVARPSPTTPR
ALPRVGFVPVQCVSTLLTHCNTIAFTYVIGEEQRRSDRHLVACPSWGGFK
WSLLVFPHGDQKKHTLAVFLKCLGRENGGYTADWKAGAKFGIGVAKRSSP
VYCCALDGGRDATVVNNACNKVLKMLACKDSRRMDEPYFGASQYLFRAKS
NNRGFPALAPTSELNTGMFCNEEGKMVLFGYISEVVSK*

spliced messenger RNA

>Ggra8884.t1 ID=Ggra8884.t1|Name=Ggra8884.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2067bp|location=Sequence derived from alignment at tig00000860_pilon:644508..646574+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGATCGAGAGCAACAAGGGAACGAAGATCAGAGTTCACCTCTGGA
GCAGACCCCAAACTCATTCGCCATAGCTTCAGCAAACATGCATACAAAGC
CGCCGCGACGAACTACTAATATGAAGAGATCTTTGAATTGCACGAATAGT
TTATCCGACCCTTCATCAAAGATGCGAAGAGTTCAAGAGGTTTCGCCTTC
CCCGTTTCCTTCCAAAGGTCCTGGTTCATCGGGAAACGTCGGGGAACGTG
TGCGAAATGCAATCGGTGAAGCTCAAGATAAAATCGCTGCAGGTAATCCG
AGGGCAAATGATGCTGGCGGCTATCACAATTCCAGTGTTTCTCACATCCT
ATACAGGGAAGATCGAAAGCATTCATCTCACAACGTCTTCACCCAGAAGT
GGTATGATGGTCTGCAGGAGTCGATTGCCAAGAAACGCTTTGAGGTGCCT
AAGAACGTGTTGATGCCAGCTTATTTTGCGATTGAGGATCACTTGCACAA
TTCGTTATTCTCATCATCTGGAGCGGAATCGGAAGAAGCAGATTTGCTTT
ACCAGGTGCTGGCTTTCGTGCAAAACATTTCGAACGAGTTCTTACATGTC
ATGGGAGACACAGAGAAATTGGATGTGAAAGCCCCAGAGAAGCACATGAT
GCACATCTGGAAAAAGATTCGAGGCGTAAGCGAAATGTTAGAGACAAGAT
ATGACCTTCTGCTGTTTCGAAGACGTGGTTATAAACTGCAGGCTAAGATG
CTCGAGAGTTATTGCGTACCTCCAGTGGGCGATAGTATTCTGGCAAAAAC
TGTCTTTCGAGAAGTCCGGAACGTTGGTCATGGAGAGGACGCCGTTGTTT
CGGCCGAATATGCACGGACGAAGGCAACAAGAATCTCAATCCCAAAACCT
CTCAGAGTTCCCAGTGAAAAGGGCAATGACAAGCGTAATTTACCAGAATC
TTCAGTGCGACATGAGCAGCTCGGAGACGATCCAACGGGTGGTAGCAATG
TCGCCCTTCATCTTCAGAATACCAGGGGAAAGCAATGCAAAAGTTCGAAC
CCAGGCATTATCAACAGTGCCGAAAACGTTGCCGTCGAAGTAATTGGCGA
GGAGTGCAGCGTGGTACATGAGGAGGATTTCGAGAAATCTAGATACAGAG
AAACTCAGATTCCATCTCACCTACTCAGTCTGCACGGGTTAGCCAGAATT
CCCGGAGAGTCGAAGCCAATTCTTCCGCTTGCAATGTCACGCGTCCTGGT
CGAACAAATGCGGAAGGACGAAAGGGATGGCGTCGTTGCCGTTCCTCCGC
GACCGGAATGGCAGAGTGTGCAGGTTGTTGCTCTCAGCGATGAGAAAGAA
CAAAGCAAATCAAACATCGCAAAGCCCCTCCCGCGTCTGCAAATGAAAAC
GCAGGAAAGTTTGCCACCTAAAAACCACGCTGTGGAGCGTGGAGTTGAGG
TGGTTCAACGGGATGAACATGTTGCGCGGCCGTCTCCGACGACACCGAGA
GCGCTCCCCCGTGTAGGATTCGTTCCTGTTCAATGTGTGAGCACGCTTCT
AACACATTGTAACACAATTGCTTTCACATACGTGATTGGAGAAGAACAAC
GACGATCCGATAGACATCTGGTTGCTTGCCCCTCGTGGGGTGGATTCAAG
TGGTCATTGTTAGTGTTTCCGCATGGGGACCAGAAGAAACATACTCTGGC
AGTGTTTCTGAAGTGCCTCGGGCGTGAGAACGGGGGGTATACTGCGGACT
GGAAGGCTGGCGCAAAGTTTGGCATAGGCGTTGCTAAACGATCATCGCCA
GTGTATTGCTGCGCTCTGGACGGGGGGCGAGATGCAACGGTTGTGAACAA
TGCTTGCAATAAAGTGTTGAAAATGCTTGCGTGCAAAGACTCACGAAGGA
TGGATGAGCCGTACTTTGGGGCATCACAATACCTCTTTCGTGCTAAGAGC
AATAATCGGGGCTTTCCTGCGCTTGCTCCGACTAGCGAGTTGAATACTGG
CATGTTTTGCAACGAGGAAGGCAAGATGGTGCTGTTTGGATATATTTCTG
AAGTGGTGTCAAAGTAG

protein sequence of Ggra8884.t1

>Ggra8884.t1 ID=Ggra8884.t1|Name=Ggra8884.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=689bp
MRDREQQGNEDQSSPLEQTPNSFAIASANMHTKPPRRTTNMKRSLNCTNS
LSDPSSKMRRVQEVSPSPFPSKGPGSSGNVGERVRNAIGEAQDKIAAGNP
RANDAGGYHNSSVSHILYREDRKHSSHNVFTQKWYDGLQESIAKKRFEVP
KNVLMPAYFAIEDHLHNSLFSSSGAESEEADLLYQVLAFVQNISNEFLHV
MGDTEKLDVKAPEKHMMHIWKKIRGVSEMLETRYDLLLFRRRGYKLQAKM
LESYCVPPVGDSILAKTVFREVRNVGHGEDAVVSAEYARTKATRISIPKP
LRVPSEKGNDKRNLPESSVRHEQLGDDPTGGSNVALHLQNTRGKQCKSSN
PGIINSAENVAVEVIGEECSVVHEEDFEKSRYRETQIPSHLLSLHGLARI
PGESKPILPLAMSRVLVEQMRKDERDGVVAVPPRPEWQSVQVVALSDEKE
QSKSNIAKPLPRLQMKTQESLPPKNHAVERGVEVVQRDEHVARPSPTTPR
ALPRVGFVPVQCVSTLLTHCNTIAFTYVIGEEQRRSDRHLVACPSWGGFK
WSLLVFPHGDQKKHTLAVFLKCLGRENGGYTADWKAGAKFGIGVAKRSSP
VYCCALDGGRDATVVNNACNKVLKMLACKDSRRMDEPYFGASQYLFRAKS
NNRGFPALAPTSELNTGMFCNEEGKMVLFGYISEVVSK*

mRNA from alignment at tig00000860_pilon:644508..646574+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8884.t1 ID=Ggra8884.t1|Name=Ggra8884.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2067bp|location=Sequence derived from alignment at tig00000860_pilon:644508..646574+ (Gracilaria gracilis GNS1m male)
ATGCGCGATCGAGAGCAACAAGGGAACGAAGATCAGAGTTCACCTCTGGA
GCAGACCCCAAACTCATTCGCCATAGCTTCAGCAAACATGCATACAAAGC
CGCCGCGACGAACTACTAATATGAAGAGATCTTTGAATTGCACGAATAGT
TTATCCGACCCTTCATCAAAGATGCGAAGAGTTCAAGAGGTTTCGCCTTC
CCCGTTTCCTTCCAAAGGTCCTGGTTCATCGGGAAACGTCGGGGAACGTG
TGCGAAATGCAATCGGTGAAGCTCAAGATAAAATCGCTGCAGGTAATCCG
AGGGCAAATGATGCTGGCGGCTATCACAATTCCAGTGTTTCTCACATCCT
ATACAGGGAAGATCGAAAGCATTCATCTCACAACGTCTTCACCCAGAAGT
GGTATGATGGTCTGCAGGAGTCGATTGCCAAGAAACGCTTTGAGGTGCCT
AAGAACGTGTTGATGCCAGCTTATTTTGCGATTGAGGATCACTTGCACAA
TTCGTTATTCTCATCATCTGGAGCGGAATCGGAAGAAGCAGATTTGCTTT
ACCAGGTGCTGGCTTTCGTGCAAAACATTTCGAACGAGTTCTTACATGTC
ATGGGAGACACAGAGAAATTGGATGTGAAAGCCCCAGAGAAGCACATGAT
GCACATCTGGAAAAAGATTCGAGGCGTAAGCGAAATGTTAGAGACAAGAT
ATGACCTTCTGCTGTTTCGAAGACGTGGTTATAAACTGCAGGCTAAGATG
CTCGAGAGTTATTGCGTACCTCCAGTGGGCGATAGTATTCTGGCAAAAAC
TGTCTTTCGAGAAGTCCGGAACGTTGGTCATGGAGAGGACGCCGTTGTTT
CGGCCGAATATGCACGGACGAAGGCAACAAGAATCTCAATCCCAAAACCT
CTCAGAGTTCCCAGTGAAAAGGGCAATGACAAGCGTAATTTACCAGAATC
TTCAGTGCGACATGAGCAGCTCGGAGACGATCCAACGGGTGGTAGCAATG
TCGCCCTTCATCTTCAGAATACCAGGGGAAAGCAATGCAAAAGTTCGAAC
CCAGGCATTATCAACAGTGCCGAAAACGTTGCCGTCGAAGTAATTGGCGA
GGAGTGCAGCGTGGTACATGAGGAGGATTTCGAGAAATCTAGATACAGAG
AAACTCAGATTCCATCTCACCTACTCAGTCTGCACGGGTTAGCCAGAATT
CCCGGAGAGTCGAAGCCAATTCTTCCGCTTGCAATGTCACGCGTCCTGGT
CGAACAAATGCGGAAGGACGAAAGGGATGGCGTCGTTGCCGTTCCTCCGC
GACCGGAATGGCAGAGTGTGCAGGTTGTTGCTCTCAGCGATGAGAAAGAA
CAAAGCAAATCAAACATCGCAAAGCCCCTCCCGCGTCTGCAAATGAAAAC
GCAGGAAAGTTTGCCACCTAAAAACCACGCTGTGGAGCGTGGAGTTGAGG
TGGTTCAACGGGATGAACATGTTGCGCGGCCGTCTCCGACGACACCGAGA
GCGCTCCCCCGTGTAGGATTCGTTCCTGTTCAATGTGTGAGCACGCTTCT
AACACATTGTAACACAATTGCTTTCACATACGTGATTGGAGAAGAACAAC
GACGATCCGATAGACATCTGGTTGCTTGCCCCTCGTGGGGTGGATTCAAG
TGGTCATTGTTAGTGTTTCCGCATGGGGACCAGAAGAAACATACTCTGGC
AGTGTTTCTGAAGTGCCTCGGGCGTGAGAACGGGGGGTATACTGCGGACT
GGAAGGCTGGCGCAAAGTTTGGCATAGGCGTTGCTAAACGATCATCGCCA
GTGTATTGCTGCGCTCTGGACGGGGGGCGAGATGCAACGGTTGTGAACAA
TGCTTGCAATAAAGTGTTGAAAATGCTTGCGTGCAAAGACTCACGAAGGA
TGGATGAGCCGTACTTTGGGGCATCACAATACCTCTTTCGTGCTAAGAGC
AATAATCGGGGCTTTCCTGCGCTTGCTCCGACTAGCGAGTTGAATACTGG
CATGTTTTGCAACGAGGAAGGCAAGATGGTGCTGTTTGGATATATTTCTG
AAGTGGTGTCAAAGTAG

Coding sequence (CDS) from alignment at tig00000860_pilon:644508..646574+

>Ggra8884.t1 ID=Ggra8884.t1|Name=Ggra8884.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2067bp|location=Sequence derived from alignment at tig00000860_pilon:644508..646574+ (Gracilaria gracilis GNS1m male)
ATGCGCGATCGAGAGCAACAAGGGAACGAAGATCAGAGTTCACCTCTGGA
GCAGACCCCAAACTCATTCGCCATAGCTTCAGCAAACATGCATACAAAGC
CGCCGCGACGAACTACTAATATGAAGAGATCTTTGAATTGCACGAATAGT
TTATCCGACCCTTCATCAAAGATGCGAAGAGTTCAAGAGGTTTCGCCTTC
CCCGTTTCCTTCCAAAGGTCCTGGTTCATCGGGAAACGTCGGGGAACGTG
TGCGAAATGCAATCGGTGAAGCTCAAGATAAAATCGCTGCAGGTAATCCG
AGGGCAAATGATGCTGGCGGCTATCACAATTCCAGTGTTTCTCACATCCT
ATACAGGGAAGATCGAAAGCATTCATCTCACAACGTCTTCACCCAGAAGT
GGTATGATGGTCTGCAGGAGTCGATTGCCAAGAAACGCTTTGAGGTGCCT
AAGAACGTGTTGATGCCAGCTTATTTTGCGATTGAGGATCACTTGCACAA
TTCGTTATTCTCATCATCTGGAGCGGAATCGGAAGAAGCAGATTTGCTTT
ACCAGGTGCTGGCTTTCGTGCAAAACATTTCGAACGAGTTCTTACATGTC
ATGGGAGACACAGAGAAATTGGATGTGAAAGCCCCAGAGAAGCACATGAT
GCACATCTGGAAAAAGATTCGAGGCGTAAGCGAAATGTTAGAGACAAGAT
ATGACCTTCTGCTGTTTCGAAGACGTGGTTATAAACTGCAGGCTAAGATG
CTCGAGAGTTATTGCGTACCTCCAGTGGGCGATAGTATTCTGGCAAAAAC
TGTCTTTCGAGAAGTCCGGAACGTTGGTCATGGAGAGGACGCCGTTGTTT
CGGCCGAATATGCACGGACGAAGGCAACAAGAATCTCAATCCCAAAACCT
CTCAGAGTTCCCAGTGAAAAGGGCAATGACAAGCGTAATTTACCAGAATC
TTCAGTGCGACATGAGCAGCTCGGAGACGATCCAACGGGTGGTAGCAATG
TCGCCCTTCATCTTCAGAATACCAGGGGAAAGCAATGCAAAAGTTCGAAC
CCAGGCATTATCAACAGTGCCGAAAACGTTGCCGTCGAAGTAATTGGCGA
GGAGTGCAGCGTGGTACATGAGGAGGATTTCGAGAAATCTAGATACAGAG
AAACTCAGATTCCATCTCACCTACTCAGTCTGCACGGGTTAGCCAGAATT
CCCGGAGAGTCGAAGCCAATTCTTCCGCTTGCAATGTCACGCGTCCTGGT
CGAACAAATGCGGAAGGACGAAAGGGATGGCGTCGTTGCCGTTCCTCCGC
GACCGGAATGGCAGAGTGTGCAGGTTGTTGCTCTCAGCGATGAGAAAGAA
CAAAGCAAATCAAACATCGCAAAGCCCCTCCCGCGTCTGCAAATGAAAAC
GCAGGAAAGTTTGCCACCTAAAAACCACGCTGTGGAGCGTGGAGTTGAGG
TGGTTCAACGGGATGAACATGTTGCGCGGCCGTCTCCGACGACACCGAGA
GCGCTCCCCCGTGTAGGATTCGTTCCTGTTCAATGTGTGAGCACGCTTCT
AACACATTGTAACACAATTGCTTTCACATACGTGATTGGAGAAGAACAAC
GACGATCCGATAGACATCTGGTTGCTTGCCCCTCGTGGGGTGGATTCAAG
TGGTCATTGTTAGTGTTTCCGCATGGGGACCAGAAGAAACATACTCTGGC
AGTGTTTCTGAAGTGCCTCGGGCGTGAGAACGGGGGGTATACTGCGGACT
GGAAGGCTGGCGCAAAGTTTGGCATAGGCGTTGCTAAACGATCATCGCCA
GTGTATTGCTGCGCTCTGGACGGGGGGCGAGATGCAACGGTTGTGAACAA
TGCTTGCAATAAAGTGTTGAAAATGCTTGCGTGCAAAGACTCACGAAGGA
TGGATGAGCCGTACTTTGGGGCATCACAATACCTCTTTCGTGCTAAGAGC
AATAATCGGGGCTTTCCTGCGCTTGCTCCGACTAGCGAGTTGAATACTGG
CATGTTTTGCAACGAGGAAGGCAAGATGGTGCTGTTTGGATATATTTCTG
AAGTGGTGTCAAAGTAG