Ggra8883.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8883.t1
Unique Name	Ggra8883.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	633

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:641589..643487 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704320.1
Preferred name	SF3A1
PFAMs	PRP21_like_P,Surp,ubiquitin
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12825
KEGG Pathway	ko03040,map03040
KEGG Module	M00352
GOs	GO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000381,GO:0000389,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0019953,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045292,GO:0046483,GO:0048024,GO:0048232,GO:0048609,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1903311,GO:1990904
Evalue	7.19e-87
EggNOG OGs	KOG0007@1\|root,KOG0007@2759\|Eukaryota
Description	mRNA 3'-splice site recognition
COG category	A
BRITE	ko00000,ko00001,ko00002,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8883	Ggra8883	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 641589..643487 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8883.t1.start1	Ggra8883.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 641589..641591 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8883.t1.CDS1	Ggra8883.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 641589..643487 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8883.t1.exon1	Ggra8883.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 641589..643487 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8883.t1.stop1	Ggra8883.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 643485..643487 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8883.t1	Ggra8883.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 641589..643487 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:641589..643487+
coding sequence from alignment at tig00000860_pilon:641589..643487+

mRNA sequence

>Ggra8883.t1 ID=Ggra8883.t1|Name=Ggra8883.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp
MVLQEGEKHSEGVGVIIPPPDVRSILETTAEFVAKRTAFEKMVLQKNGAE
PRFAFLHASNPYHAYYRKRIDHYRSLRTDSSKAKQTEPSREQKSEPSKSA
NENLKLNEEVVENDVQKATTAGMAVVSFLKAERAKQRAARPEPREPPPDD
LFTLVSVNPAPNALSLDVMKLTAQYVASNDSQFISALSRKESRNSLFDFL
KTMHPHNLLFQRLVDAYRAILSSNEEKKQTLELLEKQSKSRDSIMEEVWY
MHNWECQKAEREYEAALDENEKMKVAQIDWYDFVVLESVQFGPEDVDLPA
PIADTRQLPKILAAAREAENERLKNQRDVDMDIDSVTETAKNVRVETVNV
LSDIPADRIRRNEPLNRRESKENTNEATVVLPSGTRVPLSKVQESMRVEL
INPSYKNEKARAAEKNRLRNLADGDEVARNLARLGHAQGTGAVYNRGDLQ
EALAVMPKAPLSEADARVKKAEPSGPKLPGATLNDEARPSKRARVEAAVD
ALSRANKNMQSEEVEIKNVNQDQAGGSSLISAEEWLARQGNNAQVRVKLP
VHSNKDWKLQGQEIEMSAPLKKTVGKLKSVLAKMTNLPANKQKLSMAGAG
FMKDGMTLASYNVGDGAVISVEVKERGGRKKH*

spliced messenger RNA

>Ggra8883.t1 ID=Ggra8883.t1|Name=Ggra8883.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1899bp|location=Sequence derived from alignment at tig00000860_pilon:641589..643487+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTACTGCAGGAAGGAGAGAAGCATTCAGAAGGGGTGGGTGTCATTAT
TCCACCCCCGGACGTTCGCAGTATACTCGAAACTACGGCCGAATTTGTTG
CCAAAAGGACGGCTTTCGAGAAAATGGTTCTGCAGAAAAACGGAGCGGAA
CCGAGGTTTGCATTCTTGCACGCATCCAACCCCTATCATGCTTACTACCG
GAAACGAATAGACCACTACCGCAGCTTGAGAACAGATTCTTCGAAAGCAA
AACAAACAGAGCCATCACGTGAACAGAAATCCGAACCCTCTAAATCAGCG
AACGAGAATTTGAAACTTAACGAAGAAGTTGTTGAAAACGATGTCCAGAA
AGCAACTACAGCAGGAATGGCCGTGGTGTCTTTTCTAAAAGCGGAGCGGG
CGAAGCAAAGAGCTGCAAGACCTGAACCACGAGAGCCGCCACCCGACGAT
CTCTTTACCTTGGTTTCTGTTAACCCAGCCCCGAACGCCCTTTCTCTCGA
TGTTATGAAACTCACAGCGCAATATGTCGCTAGCAATGACAGTCAGTTTA
TCTCTGCTCTCTCTCGCAAAGAGAGTCGCAACTCTCTTTTTGATTTCCTA
AAAACAATGCACCCACACAACCTTTTGTTCCAAAGGCTTGTCGACGCCTA
CAGAGCAATACTAAGTTCGAATGAAGAGAAGAAACAAACCTTGGAATTGT
TAGAGAAGCAGTCAAAATCCAGGGATTCTATAATGGAAGAAGTTTGGTAC
ATGCATAACTGGGAATGTCAGAAAGCCGAACGCGAGTACGAAGCAGCGCT
TGATGAGAACGAGAAGATGAAGGTAGCTCAGATTGACTGGTATGATTTTG
TTGTACTGGAAAGCGTTCAATTTGGTCCGGAAGATGTTGACTTACCAGCG
CCAATAGCAGATACTCGTCAACTGCCGAAGATATTAGCCGCTGCTCGGGA
GGCCGAAAACGAACGATTGAAGAATCAACGAGATGTAGATATGGACATTG
ACAGTGTGACAGAGACAGCGAAGAACGTGCGTGTGGAAACAGTGAACGTG
CTCAGTGACATTCCTGCGGACCGAATCCGACGCAATGAGCCGTTGAATAG
AAGAGAAAGCAAGGAAAACACAAACGAAGCCACTGTGGTTTTACCGTCTG
GAACCCGTGTACCTTTATCTAAGGTGCAAGAATCTATGAGAGTAGAGTTG
ATCAATCCTTCGTACAAAAATGAAAAGGCTCGGGCTGCGGAGAAGAATCG
TCTCAGAAACCTCGCAGATGGTGACGAAGTGGCTAGAAACCTGGCTCGCC
TAGGACATGCGCAAGGGACAGGTGCGGTATACAACCGTGGTGATTTGCAG
GAGGCGCTGGCGGTTATGCCTAAGGCGCCTCTTTCTGAGGCGGATGCCCG
TGTAAAGAAAGCAGAACCATCTGGGCCTAAATTACCGGGAGCAACTTTGA
ATGATGAAGCGAGACCATCGAAAAGGGCTAGGGTAGAAGCAGCCGTGGAT
GCGTTGTCAAGAGCGAACAAAAACATGCAGAGCGAGGAGGTTGAAATAAA
GAACGTAAACCAGGACCAGGCTGGAGGCTCAAGTCTGATTAGCGCGGAAG
AATGGTTGGCGAGACAGGGGAACAACGCACAAGTACGTGTGAAACTACCA
GTACATAGTAACAAAGATTGGAAATTGCAGGGGCAGGAGATTGAAATGTC
TGCCCCACTCAAGAAGACTGTTGGAAAGCTCAAGAGTGTATTGGCGAAGA
TGACAAATCTTCCTGCCAACAAACAAAAACTCTCAATGGCAGGTGCAGGA
TTTATGAAGGATGGGATGACTTTAGCATCTTACAACGTCGGAGACGGGGC
TGTGATAAGCGTAGAAGTGAAGGAGCGAGGTGGTCGTAAGAAGCATTAG

protein sequence of Ggra8883.t1

>Ggra8883.t1 ID=Ggra8883.t1|Name=Ggra8883.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=633bp
MVLQEGEKHSEGVGVIIPPPDVRSILETTAEFVAKRTAFEKMVLQKNGAE
PRFAFLHASNPYHAYYRKRIDHYRSLRTDSSKAKQTEPSREQKSEPSKSA
NENLKLNEEVVENDVQKATTAGMAVVSFLKAERAKQRAARPEPREPPPDD
LFTLVSVNPAPNALSLDVMKLTAQYVASNDSQFISALSRKESRNSLFDFL
KTMHPHNLLFQRLVDAYRAILSSNEEKKQTLELLEKQSKSRDSIMEEVWY
MHNWECQKAEREYEAALDENEKMKVAQIDWYDFVVLESVQFGPEDVDLPA
PIADTRQLPKILAAAREAENERLKNQRDVDMDIDSVTETAKNVRVETVNV
LSDIPADRIRRNEPLNRRESKENTNEATVVLPSGTRVPLSKVQESMRVEL
INPSYKNEKARAAEKNRLRNLADGDEVARNLARLGHAQGTGAVYNRGDLQ
EALAVMPKAPLSEADARVKKAEPSGPKLPGATLNDEARPSKRARVEAAVD
ALSRANKNMQSEEVEIKNVNQDQAGGSSLISAEEWLARQGNNAQVRVKLP
VHSNKDWKLQGQEIEMSAPLKKTVGKLKSVLAKMTNLPANKQKLSMAGAG
FMKDGMTLASYNVGDGAVISVEVKERGGRKKH*

mRNA from alignment at tig00000860_pilon:641589..643487+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8883.t1 ID=Ggra8883.t1|Name=Ggra8883.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1899bp|location=Sequence derived from alignment at tig00000860_pilon:641589..643487+ (Gracilaria gracilis GNS1m male)
ATGGTACTGCAGGAAGGAGAGAAGCATTCAGAAGGGGTGGGTGTCATTAT
TCCACCCCCGGACGTTCGCAGTATACTCGAAACTACGGCCGAATTTGTTG
CCAAAAGGACGGCTTTCGAGAAAATGGTTCTGCAGAAAAACGGAGCGGAA
CCGAGGTTTGCATTCTTGCACGCATCCAACCCCTATCATGCTTACTACCG
GAAACGAATAGACCACTACCGCAGCTTGAGAACAGATTCTTCGAAAGCAA
AACAAACAGAGCCATCACGTGAACAGAAATCCGAACCCTCTAAATCAGCG
AACGAGAATTTGAAACTTAACGAAGAAGTTGTTGAAAACGATGTCCAGAA
AGCAACTACAGCAGGAATGGCCGTGGTGTCTTTTCTAAAAGCGGAGCGGG
CGAAGCAAAGAGCTGCAAGACCTGAACCACGAGAGCCGCCACCCGACGAT
CTCTTTACCTTGGTTTCTGTTAACCCAGCCCCGAACGCCCTTTCTCTCGA
TGTTATGAAACTCACAGCGCAATATGTCGCTAGCAATGACAGTCAGTTTA
TCTCTGCTCTCTCTCGCAAAGAGAGTCGCAACTCTCTTTTTGATTTCCTA
AAAACAATGCACCCACACAACCTTTTGTTCCAAAGGCTTGTCGACGCCTA
CAGAGCAATACTAAGTTCGAATGAAGAGAAGAAACAAACCTTGGAATTGT
TAGAGAAGCAGTCAAAATCCAGGGATTCTATAATGGAAGAAGTTTGGTAC
ATGCATAACTGGGAATGTCAGAAAGCCGAACGCGAGTACGAAGCAGCGCT
TGATGAGAACGAGAAGATGAAGGTAGCTCAGATTGACTGGTATGATTTTG
TTGTACTGGAAAGCGTTCAATTTGGTCCGGAAGATGTTGACTTACCAGCG
CCAATAGCAGATACTCGTCAACTGCCGAAGATATTAGCCGCTGCTCGGGA
GGCCGAAAACGAACGATTGAAGAATCAACGAGATGTAGATATGGACATTG
ACAGTGTGACAGAGACAGCGAAGAACGTGCGTGTGGAAACAGTGAACGTG
CTCAGTGACATTCCTGCGGACCGAATCCGACGCAATGAGCCGTTGAATAG
AAGAGAAAGCAAGGAAAACACAAACGAAGCCACTGTGGTTTTACCGTCTG
GAACCCGTGTACCTTTATCTAAGGTGCAAGAATCTATGAGAGTAGAGTTG
ATCAATCCTTCGTACAAAAATGAAAAGGCTCGGGCTGCGGAGAAGAATCG
TCTCAGAAACCTCGCAGATGGTGACGAAGTGGCTAGAAACCTGGCTCGCC
TAGGACATGCGCAAGGGACAGGTGCGGTATACAACCGTGGTGATTTGCAG
GAGGCGCTGGCGGTTATGCCTAAGGCGCCTCTTTCTGAGGCGGATGCCCG
TGTAAAGAAAGCAGAACCATCTGGGCCTAAATTACCGGGAGCAACTTTGA
ATGATGAAGCGAGACCATCGAAAAGGGCTAGGGTAGAAGCAGCCGTGGAT
GCGTTGTCAAGAGCGAACAAAAACATGCAGAGCGAGGAGGTTGAAATAAA
GAACGTAAACCAGGACCAGGCTGGAGGCTCAAGTCTGATTAGCGCGGAAG
AATGGTTGGCGAGACAGGGGAACAACGCACAAGTACGTGTGAAACTACCA
GTACATAGTAACAAAGATTGGAAATTGCAGGGGCAGGAGATTGAAATGTC
TGCCCCACTCAAGAAGACTGTTGGAAAGCTCAAGAGTGTATTGGCGAAGA
TGACAAATCTTCCTGCCAACAAACAAAAACTCTCAATGGCAGGTGCAGGA
TTTATGAAGGATGGGATGACTTTAGCATCTTACAACGTCGGAGACGGGGC
TGTGATAAGCGTAGAAGTGAAGGAGCGAGGTGGTCGTAAGAAGCATTAG

Coding sequence (CDS) from alignment at tig00000860_pilon:641589..643487+

>Ggra8883.t1 ID=Ggra8883.t1|Name=Ggra8883.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1899bp|location=Sequence derived from alignment at tig00000860_pilon:641589..643487+ (Gracilaria gracilis GNS1m male)
ATGGTACTGCAGGAAGGAGAGAAGCATTCAGAAGGGGTGGGTGTCATTAT
TCCACCCCCGGACGTTCGCAGTATACTCGAAACTACGGCCGAATTTGTTG
CCAAAAGGACGGCTTTCGAGAAAATGGTTCTGCAGAAAAACGGAGCGGAA
CCGAGGTTTGCATTCTTGCACGCATCCAACCCCTATCATGCTTACTACCG
GAAACGAATAGACCACTACCGCAGCTTGAGAACAGATTCTTCGAAAGCAA
AACAAACAGAGCCATCACGTGAACAGAAATCCGAACCCTCTAAATCAGCG
AACGAGAATTTGAAACTTAACGAAGAAGTTGTTGAAAACGATGTCCAGAA
AGCAACTACAGCAGGAATGGCCGTGGTGTCTTTTCTAAAAGCGGAGCGGG
CGAAGCAAAGAGCTGCAAGACCTGAACCACGAGAGCCGCCACCCGACGAT
CTCTTTACCTTGGTTTCTGTTAACCCAGCCCCGAACGCCCTTTCTCTCGA
TGTTATGAAACTCACAGCGCAATATGTCGCTAGCAATGACAGTCAGTTTA
TCTCTGCTCTCTCTCGCAAAGAGAGTCGCAACTCTCTTTTTGATTTCCTA
AAAACAATGCACCCACACAACCTTTTGTTCCAAAGGCTTGTCGACGCCTA
CAGAGCAATACTAAGTTCGAATGAAGAGAAGAAACAAACCTTGGAATTGT
TAGAGAAGCAGTCAAAATCCAGGGATTCTATAATGGAAGAAGTTTGGTAC
ATGCATAACTGGGAATGTCAGAAAGCCGAACGCGAGTACGAAGCAGCGCT
TGATGAGAACGAGAAGATGAAGGTAGCTCAGATTGACTGGTATGATTTTG
TTGTACTGGAAAGCGTTCAATTTGGTCCGGAAGATGTTGACTTACCAGCG
CCAATAGCAGATACTCGTCAACTGCCGAAGATATTAGCCGCTGCTCGGGA
GGCCGAAAACGAACGATTGAAGAATCAACGAGATGTAGATATGGACATTG
ACAGTGTGACAGAGACAGCGAAGAACGTGCGTGTGGAAACAGTGAACGTG
CTCAGTGACATTCCTGCGGACCGAATCCGACGCAATGAGCCGTTGAATAG
AAGAGAAAGCAAGGAAAACACAAACGAAGCCACTGTGGTTTTACCGTCTG
GAACCCGTGTACCTTTATCTAAGGTGCAAGAATCTATGAGAGTAGAGTTG
ATCAATCCTTCGTACAAAAATGAAAAGGCTCGGGCTGCGGAGAAGAATCG
TCTCAGAAACCTCGCAGATGGTGACGAAGTGGCTAGAAACCTGGCTCGCC
TAGGACATGCGCAAGGGACAGGTGCGGTATACAACCGTGGTGATTTGCAG
GAGGCGCTGGCGGTTATGCCTAAGGCGCCTCTTTCTGAGGCGGATGCCCG
TGTAAAGAAAGCAGAACCATCTGGGCCTAAATTACCGGGAGCAACTTTGA
ATGATGAAGCGAGACCATCGAAAAGGGCTAGGGTAGAAGCAGCCGTGGAT
GCGTTGTCAAGAGCGAACAAAAACATGCAGAGCGAGGAGGTTGAAATAAA
GAACGTAAACCAGGACCAGGCTGGAGGCTCAAGTCTGATTAGCGCGGAAG
AATGGTTGGCGAGACAGGGGAACAACGCACAAGTACGTGTGAAACTACCA
GTACATAGTAACAAAGATTGGAAATTGCAGGGGCAGGAGATTGAAATGTC
TGCCCCACTCAAGAAGACTGTTGGAAAGCTCAAGAGTGTATTGGCGAAGA
TGACAAATCTTCCTGCCAACAAACAAAAACTCTCAATGGCAGGTGCAGGA
TTTATGAAGGATGGGATGACTTTAGCATCTTACAACGTCGGAGACGGGGC
TGTGATAAGCGTAGAAGTGAAGGAGCGAGGTGGTCGTAAGAAGCATTAG