Ggra8881.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8881.t1
Unique NameGgra8881.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length137
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:633654..634411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8881Ggra8881Gracilaria gracilis GNS1m malegenetig00000860_pilon 633654..634411 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8881.t1Ggra8881.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 633654..634411 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8881.t1.stop1Ggra8881.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 633654..633656 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8881.t1.CDS1Ggra8881.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 633654..633688 -
Ggra8881.t1.CDS2Ggra8881.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 633948..633979 -
Ggra8881.t1.CDS3Ggra8881.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000860_pilon 634068..634411 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8881.t1.exon1Ggra8881.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 633654..633688 -
Ggra8881.t1.exon2Ggra8881.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 633948..633979 -
Ggra8881.t1.exon3Ggra8881.t1.exon3Gracilaria gracilis GNS1m maleexontig00000860_pilon 634068..634411 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8881.t1.intron1Ggra8881.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 633689..633947 -
Ggra8881.t1.intron2Ggra8881.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000860_pilon 633980..634067 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8881.t1.start1Ggra8881.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 634409..634411 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8881.t1 ID=Ggra8881.t1|Name=Ggra8881.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=137bp
MPFDKRVAYAVAGITAAGVGFGTAYYLYRSQTKASSLVTLPVRIEKYHEE
YLQQAAEKYTQGDVQKAFQTVVQHCMDTTSDDTSDEGIFKTVRCNSCGKK
DKIAFDALLTKDQTQWTTLSFLLNRLLVNAFCYGNP*
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spliced messenger RNA

>Ggra8881.t1 ID=Ggra8881.t1|Name=Ggra8881.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=411bp|location=Sequence derived from alignment at tig00000860_pilon:633654..634411- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTTCGACAAGCGAGTCGCGTACGCCGTCGCCGGCATCACGGCGGC
TGGCGTTGGGTTTGGAACTGCCTACTACTTGTATCGCTCCCAAACCAAGG
CTTCGTCATTGGTCACGTTGCCAGTTCGCATTGAAAAGTATCATGAAGAG
TACCTACAACAAGCTGCAGAGAAATATACCCAAGGAGATGTGCAAAAGGC
CTTTCAAACCGTCGTGCAGCATTGTATGGACACCACTTCGGACGATACCT
CAGATGAGGGTATTTTCAAAACCGTCAGATGTAACTCCTGTGGCAAGAAG
GATAAAATTGCATTTGACGCGTTGCTGACAAAGGACCAGACACAGTGGAC
GACGCTGTCATTTTTGCTCAATAGATTGCTTGTAAACGCCTTTTGTTATG
GGAATCCTTAA
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protein sequence of Ggra8881.t1

>Ggra8881.t1 ID=Ggra8881.t1|Name=Ggra8881.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=137bp
MPFDKRVAYAVAGITAAGVGFGTAYYLYRSQTKASSLVTLPVRIEKYHEE
YLQQAAEKYTQGDVQKAFQTVVQHCMDTTSDDTSDEGIFKTVRCNSCGKK
DKIAFDALLTKDQTQWTTLSFLLNRLLVNAFCYGNP*
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mRNA from alignment at tig00000860_pilon:633654..634411-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8881.t1 ID=Ggra8881.t1|Name=Ggra8881.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=758bp|location=Sequence derived from alignment at tig00000860_pilon:633654..634411- (Gracilaria gracilis GNS1m male)
ATGCCGTTCGACAAGCGAGTCGCGTACGCCGTCGCCGGCATCACGGCGGC
TGGCGTTGGGTTTGGAACTGCCTACTACTTGTATCGCTCCCAAACCAAGG
CTTCGTCATTGGTCACGTTGCCAGTTCGCATTGAAAAGTATCATGAAGAG
TACCTACAACAAGCTGCAGAGAAATATACCCAAGGAGATGTGCAAAAGGC
CTTTCAAACCGTCGTGCAGCATTGTATGGACACCACTTCGGACGATACCT
CAGATGAGGGTATTTTCAAAACCGTCAGATGTAACTCCTGTGGCAAGAAG
GATAAAATTGCATTTGACGCGTTGCTGACAAAGGACCAGACACAGTTTAT
TACCTCTATGATTGCGAAGCATGATATTGGTGGCGGTGATGAGAAAGTAG
TGCGAATTCTGATGGAATATTGTATCAATGAGGTGGACGACGCTGTCATT
TTTGCTCAATAGATGTGCGTACTTCGTCATGCGTCGCAAGTTATTCGATT
GTGAGTGCATAAATTGTACATTTCATCGTTTTCTCGCTTCATGTCTTCAG
TTAGGCCAAAAGCTGTCCCGAATCTGTGCAAAGTTTGCACTGCGCAGCTC
GGTTCCAGTATTCTTTAATCTTTTTAACAAACATCTAACCATCTATTTGC
TCTCATCTGCGTGCCAAATAACGGTCTGGCTTCCTTGCTGGGGCATATGC
TGCGAATGAACTCTATGAACTAGTGCTTGTAAACGCCTTTTGTTATGGGA
ATCCTTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:633654..634411-

>Ggra8881.t1 ID=Ggra8881.t1|Name=Ggra8881.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=411bp|location=Sequence derived from alignment at tig00000860_pilon:633654..634411- (Gracilaria gracilis GNS1m male)
ATGCCGTTCGACAAGCGAGTCGCGTACGCCGTCGCCGGCATCACGGCGGC
TGGCGTTGGGTTTGGAACTGCCTACTACTTGTATCGCTCCCAAACCAAGG
CTTCGTCATTGGTCACGTTGCCAGTTCGCATTGAAAAGTATCATGAAGAG
TACCTACAACAAGCTGCAGAGAAATATACCCAAGGAGATGTGCAAAAGGC
CTTTCAAACCGTCGTGCAGCATTGTATGGACACCACTTCGGACGATACCT
CAGATGAGGGTATTTTCAAAACCGTCAGATGTAACTCCTGTGGCAAGAAG
GATAAAATTGCATTTGACGCGTTGCTGACAAAGGACCAGACACAGTGGAC
GACGCTGTCATTTTTGCTCAATAGATTGCTTGTAAACGCCTTTTGTTATG
GGAATCCTTAA
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