Ggra8880.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8880.t1
Unique NameGgra8880.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length218
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:632734..633466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog716544.wcw_0842
PFAMsCob_adeno_trans
Max annot lvl204428|Chlamydiae
KEGG rclassRC00533
KEGG koko:K00798
KEGG ReactionR01492,R05220,R07268
KEGG Pathwayko00860,ko01100,map00860,map01100
KEGG ModuleM00122
Evalue1.01e-55
EggNOG OGsCOG2096@1|root,COG2096@2|Bacteria,2JFYG@204428|Chlamydiae
EC2.5.1.17
DescriptionCobalamin adenosyltransferase
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8880Ggra8880Gracilaria gracilis GNS1m malegenetig00000860_pilon 632734..633466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8880.t1Ggra8880.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 632734..633466 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8880.t1.start1Ggra8880.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 632734..632736 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8880.t1.CDS1Ggra8880.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 632734..632825 +
Ggra8880.t1.CDS2Ggra8880.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 632905..633466 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8880.t1.exon1Ggra8880.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 632734..632825 +
Ggra8880.t1.exon2Ggra8880.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 632905..633466 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8880.t1.intron1Ggra8880.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 632826..632904 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8880.t1.stop1Ggra8880.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 633464..633466 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8880.t1 ID=Ggra8880.t1|Name=Ggra8880.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=218bp
MKIYTRSGDEGETSLFNGSRVPKDHVLVQAYGIVDECNAAIGLAASHLQT
FEPSEDHEDLCHPSERKILIARLQLVQNFLFDLGAYLATPRKKSPTFKVE
RTEFPERAASDLENWIDDMDSKLPDLATFLLPGGHPASASLHLGRTIARR
AERMLTPLYVGQHREIEPTAYRFLNRLSDFLFVASRMANKIVSVQDVKWR
ENRSALNDVANMHAPLM*
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spliced messenger RNA

>Ggra8880.t1 ID=Ggra8880.t1|Name=Ggra8880.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=654bp|location=Sequence derived from alignment at tig00000860_pilon:632734..633466+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGATATACACTCGTTCTGGCGATGAAGGGGAAACCAGTCTGTTTAA
TGGATCACGCGTACCTAAAGACCACGTTTTGGTACAAGCTTATGGCATCG
TCGATGAATGTAACGCAGCAATCGGACTGGCCGCGTCTCACCTACAAACT
TTTGAGCCATCAGAAGATCATGAAGACCTGTGTCACCCATCGGAGCGCAA
GATTTTAATCGCGCGCCTACAGCTGGTGCAAAACTTTCTCTTCGACCTGG
GCGCCTATCTTGCCACACCGCGTAAGAAGTCACCCACGTTCAAAGTGGAA
CGTACCGAATTCCCAGAGCGTGCTGCGAGCGATTTGGAAAATTGGATCGA
TGACATGGACTCAAAGCTACCTGACTTGGCAACGTTTTTGCTACCGGGTG
GGCATCCTGCTTCCGCTTCTTTGCACCTTGGCAGAACCATTGCCAGACGT
GCTGAGCGCATGCTTACACCTTTGTATGTTGGGCAACATAGGGAGATTGA
GCCAACTGCGTACCGATTTCTCAATCGCCTGTCGGATTTCTTGTTCGTGG
CTTCGAGGATGGCAAATAAGATTGTCTCGGTTCAGGATGTGAAATGGAGA
GAGAACCGATCGGCTCTTAATGATGTGGCCAATATGCATGCTCCACTAAT
GTAG
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protein sequence of Ggra8880.t1

>Ggra8880.t1 ID=Ggra8880.t1|Name=Ggra8880.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=218bp
MKIYTRSGDEGETSLFNGSRVPKDHVLVQAYGIVDECNAAIGLAASHLQT
FEPSEDHEDLCHPSERKILIARLQLVQNFLFDLGAYLATPRKKSPTFKVE
RTEFPERAASDLENWIDDMDSKLPDLATFLLPGGHPASASLHLGRTIARR
AERMLTPLYVGQHREIEPTAYRFLNRLSDFLFVASRMANKIVSVQDVKWR
ENRSALNDVANMHAPLM*
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mRNA from alignment at tig00000860_pilon:632734..633466+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8880.t1 ID=Ggra8880.t1|Name=Ggra8880.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=733bp|location=Sequence derived from alignment at tig00000860_pilon:632734..633466+ (Gracilaria gracilis GNS1m male)
ATGAAGATATACACTCGTTCTGGCGATGAAGGGGAAACCAGTCTGTTTAA
TGGATCACGCGTACCTAAAGACCACGTTTTGGTACAAGCTTAGTAAGTCT
CTCCTATCTACATCAGTCGCTGTTCCCCCACATTAGTACCAAAATAAGTC
AATTGACAGTCGTTCTTGTAGTGGCATCGTCGATGAATGTAACGCAGCAA
TCGGACTGGCCGCGTCTCACCTACAAACTTTTGAGCCATCAGAAGATCAT
GAAGACCTGTGTCACCCATCGGAGCGCAAGATTTTAATCGCGCGCCTACA
GCTGGTGCAAAACTTTCTCTTCGACCTGGGCGCCTATCTTGCCACACCGC
GTAAGAAGTCACCCACGTTCAAAGTGGAACGTACCGAATTCCCAGAGCGT
GCTGCGAGCGATTTGGAAAATTGGATCGATGACATGGACTCAAAGCTACC
TGACTTGGCAACGTTTTTGCTACCGGGTGGGCATCCTGCTTCCGCTTCTT
TGCACCTTGGCAGAACCATTGCCAGACGTGCTGAGCGCATGCTTACACCT
TTGTATGTTGGGCAACATAGGGAGATTGAGCCAACTGCGTACCGATTTCT
CAATCGCCTGTCGGATTTCTTGTTCGTGGCTTCGAGGATGGCAAATAAGA
TTGTCTCGGTTCAGGATGTGAAATGGAGAGAGAACCGATCGGCTCTTAAT
GATGTGGCCAATATGCATGCTCCACTAATGTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:632734..633466+

>Ggra8880.t1 ID=Ggra8880.t1|Name=Ggra8880.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=654bp|location=Sequence derived from alignment at tig00000860_pilon:632734..633466+ (Gracilaria gracilis GNS1m male)
ATGAAGATATACACTCGTTCTGGCGATGAAGGGGAAACCAGTCTGTTTAA
TGGATCACGCGTACCTAAAGACCACGTTTTGGTACAAGCTTATGGCATCG
TCGATGAATGTAACGCAGCAATCGGACTGGCCGCGTCTCACCTACAAACT
TTTGAGCCATCAGAAGATCATGAAGACCTGTGTCACCCATCGGAGCGCAA
GATTTTAATCGCGCGCCTACAGCTGGTGCAAAACTTTCTCTTCGACCTGG
GCGCCTATCTTGCCACACCGCGTAAGAAGTCACCCACGTTCAAAGTGGAA
CGTACCGAATTCCCAGAGCGTGCTGCGAGCGATTTGGAAAATTGGATCGA
TGACATGGACTCAAAGCTACCTGACTTGGCAACGTTTTTGCTACCGGGTG
GGCATCCTGCTTCCGCTTCTTTGCACCTTGGCAGAACCATTGCCAGACGT
GCTGAGCGCATGCTTACACCTTTGTATGTTGGGCAACATAGGGAGATTGA
GCCAACTGCGTACCGATTTCTCAATCGCCTGTCGGATTTCTTGTTCGTGG
CTTCGAGGATGGCAAATAAGATTGTCTCGGTTCAGGATGTGAAATGGAGA
GAGAACCGATCGGCTCTTAATGATGTGGCCAATATGCATGCTCCACTAAT
GTAG
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