Ggra8878.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8878.t1
Unique NameGgra8878.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length162
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:618859..619441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35128.Thaps11479
Max annot lvl2836|Bacillariophyta
Evalue7.09e-09
EggNOG OGs2CACH@1|root,2SH2H@2759|Eukaryota,2XH81@2836|Bacillariophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8878Ggra8878Gracilaria gracilis GNS1m malegenetig00000860_pilon 618859..619441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8878.t1Ggra8878.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 618859..619441 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8878.t1.stop1Ggra8878.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 618859..618861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8878.t1.CDS1Ggra8878.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 618859..619156 -
Ggra8878.t1.CDS2Ggra8878.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 619254..619441 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8878.t1.exon1Ggra8878.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 618859..619156 -
Ggra8878.t1.exon2Ggra8878.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 619254..619441 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8878.t1.intron1Ggra8878.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 619157..619253 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8878.t1.start1Ggra8878.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 619439..619441 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8878.t1 ID=Ggra8878.t1|Name=Ggra8878.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=162bp
MAWCNAPMRLQTGRTRPSFHRATCKLDDASRTPILHASAARKTLASISAS
ILLSLLTINGCHAEIISQPLCEKGEGPGCEAAAQDNALIGELLQKSRNNR
QKNDQAMLEKYWRQGYGDYFSFGFNKELIKDDDGQWRLVEPKGLSTAVKN
RLEDLIRRNNK*
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spliced messenger RNA

>Ggra8878.t1 ID=Ggra8878.t1|Name=Ggra8878.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=486bp|location=Sequence derived from alignment at tig00000860_pilon:618859..619441- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTGGTGCAACGCGCCCATGCGGCTGCAAACTGGCAGAACACGCCC
TTCCTTCCATCGCGCCACATGCAAGCTTGATGACGCGTCGCGAACACCGA
TTTTGCATGCATCGGCCGCTCGGAAGACGCTTGCTTCCATCTCCGCTTCC
ATTCTGCTTTCGTTGCTAACCATCAATGGCTGTCATGCGGAGATCATATC
GCAGCCTCTGTGCGAGAAGGGGGAGGGGCCGGGGTGCGAGGCGGCGGCGC
AGGACAACGCGCTGATTGGCGAGTTGCTGCAAAAGTCGCGGAACAATCGG
CAGAAGAACGACCAGGCGATGCTGGAAAAGTACTGGCGACAGGGCTACGG
CGACTATTTCTCGTTTGGATTCAACAAAGAACTCATCAAGGACGATGATG
GCCAGTGGAGGTTGGTCGAGCCAAAGGGGCTCAGCACCGCTGTCAAGAAC
CGGCTCGAGGATTTGATCAGACGCAATAATAAATAG
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protein sequence of Ggra8878.t1

>Ggra8878.t1 ID=Ggra8878.t1|Name=Ggra8878.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=162bp
MAWCNAPMRLQTGRTRPSFHRATCKLDDASRTPILHASAARKTLASISAS
ILLSLLTINGCHAEIISQPLCEKGEGPGCEAAAQDNALIGELLQKSRNNR
QKNDQAMLEKYWRQGYGDYFSFGFNKELIKDDDGQWRLVEPKGLSTAVKN
RLEDLIRRNNK*
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mRNA from alignment at tig00000860_pilon:618859..619441-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8878.t1 ID=Ggra8878.t1|Name=Ggra8878.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=583bp|location=Sequence derived from alignment at tig00000860_pilon:618859..619441- (Gracilaria gracilis GNS1m male)
ATGGCGTGGTGCAACGCGCCCATGCGGCTGCAAACTGGCAGAACACGCCC
TTCCTTCCATCGCGCCACATGCAAGCTTGATGACGCGTCGCGAACACCGA
TTTTGCATGCATCGGCCGCTCGGAAGACGCTTGCTTCCATCTCCGCTTCC
ATTCTGCTTTCGTTGCTAACCATCAATGGCTGTCATGCGTAAGTTTTGAA
CACACCGCGTATATGTGCGTCACAGCGCGCGCCACGCATCAGCGCGCTCT
AAGTTTGTGGTTCTAACCGCCGACATGGCGCGCAGGGAGATCATATCGCA
GCCTCTGTGCGAGAAGGGGGAGGGGCCGGGGTGCGAGGCGGCGGCGCAGG
ACAACGCGCTGATTGGCGAGTTGCTGCAAAAGTCGCGGAACAATCGGCAG
AAGAACGACCAGGCGATGCTGGAAAAGTACTGGCGACAGGGCTACGGCGA
CTATTTCTCGTTTGGATTCAACAAAGAACTCATCAAGGACGATGATGGCC
AGTGGAGGTTGGTCGAGCCAAAGGGGCTCAGCACCGCTGTCAAGAACCGG
CTCGAGGATTTGATCAGACGCAATAATAAATAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:618859..619441-

>Ggra8878.t1 ID=Ggra8878.t1|Name=Ggra8878.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=486bp|location=Sequence derived from alignment at tig00000860_pilon:618859..619441- (Gracilaria gracilis GNS1m male)
ATGGCGTGGTGCAACGCGCCCATGCGGCTGCAAACTGGCAGAACACGCCC
TTCCTTCCATCGCGCCACATGCAAGCTTGATGACGCGTCGCGAACACCGA
TTTTGCATGCATCGGCCGCTCGGAAGACGCTTGCTTCCATCTCCGCTTCC
ATTCTGCTTTCGTTGCTAACCATCAATGGCTGTCATGCGGAGATCATATC
GCAGCCTCTGTGCGAGAAGGGGGAGGGGCCGGGGTGCGAGGCGGCGGCGC
AGGACAACGCGCTGATTGGCGAGTTGCTGCAAAAGTCGCGGAACAATCGG
CAGAAGAACGACCAGGCGATGCTGGAAAAGTACTGGCGACAGGGCTACGG
CGACTATTTCTCGTTTGGATTCAACAAAGAACTCATCAAGGACGATGATG
GCCAGTGGAGGTTGGTCGAGCCAAAGGGGCTCAGCACCGCTGTCAAGAAC
CGGCTCGAGGATTTGATCAGACGCAATAATAAATAG
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