Ggra8877.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8877.t1
Unique Name	Ggra8877.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	696

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:616535..618622 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	48698.ENSPFOP00000010504
Preferred name	TREH
PFAMs	Trehalase
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00049
KEGG ko	ko:K01194
KEGG Reaction	R00010
KEGG Pathway	ko00500,ko01100,map00500,map01100
GOs	GO:0003674,GO:0003824,GO:0004553,GO:0004555,GO:0005575,GO:0005623,GO:0005886,GO:0005903,GO:0005975,GO:0005984,GO:0005991,GO:0005993,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009311,GO:0009313,GO:0009653,GO:0009887,GO:0009987,GO:0015927,GO:0016020,GO:0016052,GO:0016787,GO:0016798,GO:0019827,GO:0031224,GO:0031225,GO:0031226,GO:0032501,GO:0032502,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044275,GO:0044425,GO:0044459,GO:0044464,GO:0046352,GO:0046658,GO:0048513,GO:0048731,GO:0048856,GO:0071704,GO:0071944,GO:0097150,GO:0098727,GO:0098862,GO:1901575
Evalue	1.19e-87
EggNOG OGs	COG1626@1\|root,KOG0602@2759\|Eukaryota,38CKH@33154\|Opisthokonta,3BBMJ@33208\|Metazoa,3CRSP@33213\|Bilateria,488HJ@7711\|Chordata,48Z3Q@7742\|Vertebrata,4A0MM@7898\|Actinopterygii
EC	3.2.1.28
Description	Trehalase (brush-border membrane glycoprotein)
COG category	G
CAZy	GH37
BRITE	ko00000,ko00001,ko00537,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8877	Ggra8877	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 616535..618622 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8877.t1.stop1	Ggra8877.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 616535..616537 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8877.t1.CDS1	Ggra8877.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 616535..618622 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8877.t1.exon1	Ggra8877.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 616535..618622 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8877.t1.start1	Ggra8877.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 618620..618622 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8877.t1	Ggra8877.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 616535..618622 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:616535..618622-
coding sequence from alignment at tig00000860_pilon:616535..618622-

mRNA sequence

>Ggra8877.t1 ID=Ggra8877.t1|Name=Ggra8877.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=696bp
MRVHCLSPLRTRSRTPLAFAAASFRINAAPSPAIAPPSCARLRSDSHAVA
AMGPNSAFVRCTSFNALPHPAVSVPATQYHHCRPAMTSSPSSTFRLHDAH
DTELLSVAQRDQLFPAAQVFCNPDVLRFVQNSPFRPFEDSKTFVDMELAH
PPHVVLKRFYSLLQQPHVSEQQYTQFVQWAVRQPQQQLVRTHTPVDYNDE
IPSFLHTTSAKLDPHVVEFVMDIKKRWRALARSFDTSISIEQHKQVSSLI
PLPHPFFIPGGRFQECYYWDTLWIVKGLIACDMIQSAKSAVRNLIHLVKE
FGFVPNGNRVYYLNRSQPPVLALAVNQVYLALSNPDEKAQWLLETVPHLD
TELDSFERSHAISRVHPNSSLSSYRLSVYNVVTDHARPEAFKEDTETVEE
MMARAPHLRDDESARTEVFRHIAAGAESGWDYSSRWFCNSDNCVSETQAV
NIVPCCLNSILYLVERVTASLHNQLASHYNQNGAVGASSSSLRDKARFHT
DKHLQYEQIAEDRKQSISSVLFDYDKLFGFDYDVSEERSTNVSSVAGMMP
IWSGCFDNEWKGTLDLKTFVDAVMNESGLVDKGGLAATAQVTKEQWDFPN
CWPPLLDIAVDVLERVGKFDPESGGTEAAEEIARRFVNTAYQGWRTENVF
HEKYDCRSETGKRGEGGEYKPQTGFGWTNGTILWLLKKYPHILQA*

spliced messenger RNA

>Ggra8877.t1 ID=Ggra8877.t1|Name=Ggra8877.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2088bp|location=Sequence derived from alignment at tig00000860_pilon:616535..618622- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGTGCATTGCCTGTCACCGCTGCGCACGCGCAGCCGCACGCCGCT
GGCGTTCGCGGCGGCGTCCTTTCGCATAAATGCTGCGCCTTCCCCCGCCA
TCGCCCCGCCCTCGTGCGCCCGTCTCCGCTCTGACTCGCACGCCGTGGCT
GCCATGGGCCCCAACTCTGCCTTTGTCCGCTGCACCTCTTTCAACGCCTT
GCCGCACCCCGCGGTGAGCGTGCCTGCCACCCAATACCACCACTGCCGCC
CCGCCATGACCTCTTCCCCTTCTTCCACTTTCCGCCTGCACGATGCCCAT
GATACCGAGCTGCTCAGTGTCGCCCAGCGTGATCAATTGTTCCCTGCTGC
CCAGGTGTTCTGCAATCCCGATGTGTTGCGCTTCGTGCAGAACTCCCCCT
TTCGACCGTTTGAGGATTCCAAGACCTTTGTTGACATGGAGCTGGCGCAT
CCCCCGCACGTTGTGCTCAAACGCTTTTATAGCCTGCTTCAACAACCTCA
TGTTTCGGAGCAGCAGTACACCCAGTTCGTGCAATGGGCCGTCAGACAAC
CGCAACAACAACTTGTGCGCACGCATACTCCCGTCGACTACAATGATGAA
ATTCCCTCCTTTCTTCACACCACTTCAGCCAAGCTTGACCCGCATGTCGT
CGAGTTTGTCATGGATATAAAAAAGCGCTGGCGCGCGCTGGCGCGTTCGT
TCGATACCTCCATTTCAATTGAGCAACACAAACAGGTTTCTTCCCTCATT
CCTTTACCTCATCCGTTCTTCATTCCAGGAGGTCGTTTCCAAGAGTGTTA
CTACTGGGACACACTTTGGATTGTCAAGGGCTTGATTGCTTGTGACATGA
TTCAGTCTGCAAAGAGTGCCGTGCGCAATCTCATACATCTCGTCAAGGAG
TTTGGTTTTGTTCCGAATGGCAATCGCGTTTATTATTTGAATCGCTCACA
GCCGCCAGTGCTTGCCTTGGCCGTCAACCAAGTGTATCTCGCGCTCTCTA
ATCCCGATGAAAAGGCACAGTGGCTGCTTGAAACCGTACCACATCTGGAC
ACTGAACTCGATTCCTTTGAGCGCTCTCACGCCATTTCACGTGTGCATCC
CAACAGCTCCCTTTCCTCTTATCGTTTATCGGTGTACAACGTCGTCACTG
ATCATGCGCGTCCGGAAGCATTTAAAGAAGACACTGAAACTGTGGAGGAG
ATGATGGCCCGTGCTCCTCATCTTCGCGACGATGAAAGTGCTCGCACAGA
AGTATTCAGACACATTGCTGCCGGTGCCGAAAGTGGCTGGGATTACTCTT
CACGATGGTTTTGCAACAGTGATAACTGTGTTTCTGAGACCCAGGCCGTC
AACATTGTGCCATGCTGCTTGAATAGCATTCTGTACCTTGTTGAAAGAGT
GACGGCCAGCTTGCATAACCAACTTGCCTCGCATTACAATCAGAATGGTG
CTGTGGGTGCTTCCTCGTCGTCCCTGAGGGACAAGGCTCGTTTTCACACC
GATAAACATTTGCAGTATGAACAGATTGCGGAAGATCGAAAGCAATCAAT
CAGTTCGGTGCTGTTTGACTATGACAAACTATTTGGTTTCGATTACGATG
TCAGCGAGGAACGAAGTACTAATGTATCGTCCGTGGCCGGTATGATGCCA
ATTTGGAGTGGTTGTTTCGATAACGAATGGAAGGGTACACTTGATCTCAA
GACTTTCGTAGATGCAGTAATGAATGAATCTGGTCTTGTTGACAAAGGAG
GATTGGCGGCCACAGCTCAAGTGACTAAGGAGCAATGGGATTTTCCGAAC
TGTTGGCCTCCTTTACTTGATATAGCCGTGGACGTCTTGGAAAGGGTGGG
TAAGTTTGATCCAGAAAGCGGTGGAACGGAGGCTGCTGAGGAAATAGCGC
GTCGTTTCGTGAACACTGCGTATCAAGGCTGGAGAACGGAGAACGTGTTT
CATGAGAAGTATGATTGCAGATCTGAGACGGGAAAACGGGGAGAAGGTGG
TGAATACAAACCTCAGACTGGATTTGGTTGGACCAATGGTACCATATTGT
GGTTGCTCAAGAAATATCCGCACATTCTTCAAGCCTGA

protein sequence of Ggra8877.t1

>Ggra8877.t1 ID=Ggra8877.t1|Name=Ggra8877.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=696bp
MRVHCLSPLRTRSRTPLAFAAASFRINAAPSPAIAPPSCARLRSDSHAVA
AMGPNSAFVRCTSFNALPHPAVSVPATQYHHCRPAMTSSPSSTFRLHDAH
DTELLSVAQRDQLFPAAQVFCNPDVLRFVQNSPFRPFEDSKTFVDMELAH
PPHVVLKRFYSLLQQPHVSEQQYTQFVQWAVRQPQQQLVRTHTPVDYNDE
IPSFLHTTSAKLDPHVVEFVMDIKKRWRALARSFDTSISIEQHKQVSSLI
PLPHPFFIPGGRFQECYYWDTLWIVKGLIACDMIQSAKSAVRNLIHLVKE
FGFVPNGNRVYYLNRSQPPVLALAVNQVYLALSNPDEKAQWLLETVPHLD
TELDSFERSHAISRVHPNSSLSSYRLSVYNVVTDHARPEAFKEDTETVEE
MMARAPHLRDDESARTEVFRHIAAGAESGWDYSSRWFCNSDNCVSETQAV
NIVPCCLNSILYLVERVTASLHNQLASHYNQNGAVGASSSSLRDKARFHT
DKHLQYEQIAEDRKQSISSVLFDYDKLFGFDYDVSEERSTNVSSVAGMMP
IWSGCFDNEWKGTLDLKTFVDAVMNESGLVDKGGLAATAQVTKEQWDFPN
CWPPLLDIAVDVLERVGKFDPESGGTEAAEEIARRFVNTAYQGWRTENVF
HEKYDCRSETGKRGEGGEYKPQTGFGWTNGTILWLLKKYPHILQA*

mRNA from alignment at tig00000860_pilon:616535..618622-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8877.t1 ID=Ggra8877.t1|Name=Ggra8877.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2088bp|location=Sequence derived from alignment at tig00000860_pilon:616535..618622- (Gracilaria gracilis GNS1m male)
ATGAGAGTGCATTGCCTGTCACCGCTGCGCACGCGCAGCCGCACGCCGCT
GGCGTTCGCGGCGGCGTCCTTTCGCATAAATGCTGCGCCTTCCCCCGCCA
TCGCCCCGCCCTCGTGCGCCCGTCTCCGCTCTGACTCGCACGCCGTGGCT
GCCATGGGCCCCAACTCTGCCTTTGTCCGCTGCACCTCTTTCAACGCCTT
GCCGCACCCCGCGGTGAGCGTGCCTGCCACCCAATACCACCACTGCCGCC
CCGCCATGACCTCTTCCCCTTCTTCCACTTTCCGCCTGCACGATGCCCAT
GATACCGAGCTGCTCAGTGTCGCCCAGCGTGATCAATTGTTCCCTGCTGC
CCAGGTGTTCTGCAATCCCGATGTGTTGCGCTTCGTGCAGAACTCCCCCT
TTCGACCGTTTGAGGATTCCAAGACCTTTGTTGACATGGAGCTGGCGCAT
CCCCCGCACGTTGTGCTCAAACGCTTTTATAGCCTGCTTCAACAACCTCA
TGTTTCGGAGCAGCAGTACACCCAGTTCGTGCAATGGGCCGTCAGACAAC
CGCAACAACAACTTGTGCGCACGCATACTCCCGTCGACTACAATGATGAA
ATTCCCTCCTTTCTTCACACCACTTCAGCCAAGCTTGACCCGCATGTCGT
CGAGTTTGTCATGGATATAAAAAAGCGCTGGCGCGCGCTGGCGCGTTCGT
TCGATACCTCCATTTCAATTGAGCAACACAAACAGGTTTCTTCCCTCATT
CCTTTACCTCATCCGTTCTTCATTCCAGGAGGTCGTTTCCAAGAGTGTTA
CTACTGGGACACACTTTGGATTGTCAAGGGCTTGATTGCTTGTGACATGA
TTCAGTCTGCAAAGAGTGCCGTGCGCAATCTCATACATCTCGTCAAGGAG
TTTGGTTTTGTTCCGAATGGCAATCGCGTTTATTATTTGAATCGCTCACA
GCCGCCAGTGCTTGCCTTGGCCGTCAACCAAGTGTATCTCGCGCTCTCTA
ATCCCGATGAAAAGGCACAGTGGCTGCTTGAAACCGTACCACATCTGGAC
ACTGAACTCGATTCCTTTGAGCGCTCTCACGCCATTTCACGTGTGCATCC
CAACAGCTCCCTTTCCTCTTATCGTTTATCGGTGTACAACGTCGTCACTG
ATCATGCGCGTCCGGAAGCATTTAAAGAAGACACTGAAACTGTGGAGGAG
ATGATGGCCCGTGCTCCTCATCTTCGCGACGATGAAAGTGCTCGCACAGA
AGTATTCAGACACATTGCTGCCGGTGCCGAAAGTGGCTGGGATTACTCTT
CACGATGGTTTTGCAACAGTGATAACTGTGTTTCTGAGACCCAGGCCGTC
AACATTGTGCCATGCTGCTTGAATAGCATTCTGTACCTTGTTGAAAGAGT
GACGGCCAGCTTGCATAACCAACTTGCCTCGCATTACAATCAGAATGGTG
CTGTGGGTGCTTCCTCGTCGTCCCTGAGGGACAAGGCTCGTTTTCACACC
GATAAACATTTGCAGTATGAACAGATTGCGGAAGATCGAAAGCAATCAAT
CAGTTCGGTGCTGTTTGACTATGACAAACTATTTGGTTTCGATTACGATG
TCAGCGAGGAACGAAGTACTAATGTATCGTCCGTGGCCGGTATGATGCCA
ATTTGGAGTGGTTGTTTCGATAACGAATGGAAGGGTACACTTGATCTCAA
GACTTTCGTAGATGCAGTAATGAATGAATCTGGTCTTGTTGACAAAGGAG
GATTGGCGGCCACAGCTCAAGTGACTAAGGAGCAATGGGATTTTCCGAAC
TGTTGGCCTCCTTTACTTGATATAGCCGTGGACGTCTTGGAAAGGGTGGG
TAAGTTTGATCCAGAAAGCGGTGGAACGGAGGCTGCTGAGGAAATAGCGC
GTCGTTTCGTGAACACTGCGTATCAAGGCTGGAGAACGGAGAACGTGTTT
CATGAGAAGTATGATTGCAGATCTGAGACGGGAAAACGGGGAGAAGGTGG
TGAATACAAACCTCAGACTGGATTTGGTTGGACCAATGGTACCATATTGT
GGTTGCTCAAGAAATATCCGCACATTCTTCAAGCCTGA

Coding sequence (CDS) from alignment at tig00000860_pilon:616535..618622-

>Ggra8877.t1 ID=Ggra8877.t1|Name=Ggra8877.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2088bp|location=Sequence derived from alignment at tig00000860_pilon:616535..618622- (Gracilaria gracilis GNS1m male)
ATGAGAGTGCATTGCCTGTCACCGCTGCGCACGCGCAGCCGCACGCCGCT
GGCGTTCGCGGCGGCGTCCTTTCGCATAAATGCTGCGCCTTCCCCCGCCA
TCGCCCCGCCCTCGTGCGCCCGTCTCCGCTCTGACTCGCACGCCGTGGCT
GCCATGGGCCCCAACTCTGCCTTTGTCCGCTGCACCTCTTTCAACGCCTT
GCCGCACCCCGCGGTGAGCGTGCCTGCCACCCAATACCACCACTGCCGCC
CCGCCATGACCTCTTCCCCTTCTTCCACTTTCCGCCTGCACGATGCCCAT
GATACCGAGCTGCTCAGTGTCGCCCAGCGTGATCAATTGTTCCCTGCTGC
CCAGGTGTTCTGCAATCCCGATGTGTTGCGCTTCGTGCAGAACTCCCCCT
TTCGACCGTTTGAGGATTCCAAGACCTTTGTTGACATGGAGCTGGCGCAT
CCCCCGCACGTTGTGCTCAAACGCTTTTATAGCCTGCTTCAACAACCTCA
TGTTTCGGAGCAGCAGTACACCCAGTTCGTGCAATGGGCCGTCAGACAAC
CGCAACAACAACTTGTGCGCACGCATACTCCCGTCGACTACAATGATGAA
ATTCCCTCCTTTCTTCACACCACTTCAGCCAAGCTTGACCCGCATGTCGT
CGAGTTTGTCATGGATATAAAAAAGCGCTGGCGCGCGCTGGCGCGTTCGT
TCGATACCTCCATTTCAATTGAGCAACACAAACAGGTTTCTTCCCTCATT
CCTTTACCTCATCCGTTCTTCATTCCAGGAGGTCGTTTCCAAGAGTGTTA
CTACTGGGACACACTTTGGATTGTCAAGGGCTTGATTGCTTGTGACATGA
TTCAGTCTGCAAAGAGTGCCGTGCGCAATCTCATACATCTCGTCAAGGAG
TTTGGTTTTGTTCCGAATGGCAATCGCGTTTATTATTTGAATCGCTCACA
GCCGCCAGTGCTTGCCTTGGCCGTCAACCAAGTGTATCTCGCGCTCTCTA
ATCCCGATGAAAAGGCACAGTGGCTGCTTGAAACCGTACCACATCTGGAC
ACTGAACTCGATTCCTTTGAGCGCTCTCACGCCATTTCACGTGTGCATCC
CAACAGCTCCCTTTCCTCTTATCGTTTATCGGTGTACAACGTCGTCACTG
ATCATGCGCGTCCGGAAGCATTTAAAGAAGACACTGAAACTGTGGAGGAG
ATGATGGCCCGTGCTCCTCATCTTCGCGACGATGAAAGTGCTCGCACAGA
AGTATTCAGACACATTGCTGCCGGTGCCGAAAGTGGCTGGGATTACTCTT
CACGATGGTTTTGCAACAGTGATAACTGTGTTTCTGAGACCCAGGCCGTC
AACATTGTGCCATGCTGCTTGAATAGCATTCTGTACCTTGTTGAAAGAGT
GACGGCCAGCTTGCATAACCAACTTGCCTCGCATTACAATCAGAATGGTG
CTGTGGGTGCTTCCTCGTCGTCCCTGAGGGACAAGGCTCGTTTTCACACC
GATAAACATTTGCAGTATGAACAGATTGCGGAAGATCGAAAGCAATCAAT
CAGTTCGGTGCTGTTTGACTATGACAAACTATTTGGTTTCGATTACGATG
TCAGCGAGGAACGAAGTACTAATGTATCGTCCGTGGCCGGTATGATGCCA
ATTTGGAGTGGTTGTTTCGATAACGAATGGAAGGGTACACTTGATCTCAA
GACTTTCGTAGATGCAGTAATGAATGAATCTGGTCTTGTTGACAAAGGAG
GATTGGCGGCCACAGCTCAAGTGACTAAGGAGCAATGGGATTTTCCGAAC
TGTTGGCCTCCTTTACTTGATATAGCCGTGGACGTCTTGGAAAGGGTGGG
TAAGTTTGATCCAGAAAGCGGTGGAACGGAGGCTGCTGAGGAAATAGCGC
GTCGTTTCGTGAACACTGCGTATCAAGGCTGGAGAACGGAGAACGTGTTT
CATGAGAAGTATGATTGCAGATCTGAGACGGGAAAACGGGGAGAAGGTGG
TGAATACAAACCTCAGACTGGATTTGGTTGGACCAATGGTACCATATTGT
GGTTGCTCAAGAAATATCCGCACATTCTTCAAGCCTGA