Ggra8875.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8875.t1
Unique NameGgra8875.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length227
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:612764..613444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8875Ggra8875Gracilaria gracilis GNS1m malegenetig00000860_pilon 612764..613444 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8875.t1.stop1Ggra8875.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 612764..612766 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8875.t1.CDS1Ggra8875.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 612764..613444 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8875.t1.exon1Ggra8875.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 612764..613444 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8875.t1.start1Ggra8875.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 613442..613444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8875.t1Ggra8875.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 612764..613444 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8875.t1 ID=Ggra8875.t1|Name=Ggra8875.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=227bp
MTSPVLFNRGPREASEIVIFPPILRCLVWFFVSSSSSLKLGVAFGDTGEV
SNGVEDKSIDCEGAGEVSTGFEGEAGGSDGKLDAEMEGDAVLVDDGDADI
SIVDGRGEIEEVSCGASDAIGADASTLREALGENEEVKDGNTAVALGVGV
FTAFSDGARIPWVGIPSEPDGIETVVDGTEEATGEEMASDVVSPTLVAEL
PVSDCCVCLVCGRIEGSGLLSVRVFL*
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spliced messenger RNA

>Ggra8875.t1 ID=Ggra8875.t1|Name=Ggra8875.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=681bp|location=Sequence derived from alignment at tig00000860_pilon:612764..613444- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCACCCGTTCTATTCAATAGAGGGCCACGGGAAGCGTCAGAAAT
AGTTATCTTTCCGCCGATACTTAGATGCTTGGTTTGGTTCTTCGTCTCGT
CGTCATCGTCTTTGAAACTGGGGGTGGCCTTTGGGGATACGGGAGAAGTT
TCTAATGGTGTGGAAGACAAAAGCATTGACTGTGAGGGCGCAGGCGAAGT
CTCCACCGGCTTTGAAGGGGAGGCAGGTGGCAGTGATGGCAAGCTGGACG
CTGAAATGGAAGGGGACGCTGTTCTCGTGGATGACGGGGACGCAGACATT
TCAATAGTTGATGGACGCGGTGAAATTGAAGAAGTCAGTTGCGGAGCTTC
AGACGCAATAGGAGCAGACGCATCAACACTGCGAGAAGCACTCGGCGAGA
ATGAAGAAGTCAAGGATGGTAACACGGCTGTCGCACTTGGAGTCGGAGTG
TTCACTGCGTTCTCGGATGGTGCCAGAATACCTTGGGTCGGTATTCCATC
TGAGCCCGATGGGATTGAAACTGTGGTTGACGGCACTGAAGAAGCAACGG
GTGAAGAGATGGCTTCTGACGTCGTGTCGCCCACACTAGTGGCAGAACTT
CCTGTTAGTGATTGCTGTGTCTGCCTCGTCTGTGGCCGGATTGAAGGCAG
TGGTTTGTTATCTGTCAGAGTGTTCCTTTGA
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protein sequence of Ggra8875.t1

>Ggra8875.t1 ID=Ggra8875.t1|Name=Ggra8875.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=227bp
MTSPVLFNRGPREASEIVIFPPILRCLVWFFVSSSSSLKLGVAFGDTGEV
SNGVEDKSIDCEGAGEVSTGFEGEAGGSDGKLDAEMEGDAVLVDDGDADI
SIVDGRGEIEEVSCGASDAIGADASTLREALGENEEVKDGNTAVALGVGV
FTAFSDGARIPWVGIPSEPDGIETVVDGTEEATGEEMASDVVSPTLVAEL
PVSDCCVCLVCGRIEGSGLLSVRVFL*
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mRNA from alignment at tig00000860_pilon:612764..613444-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8875.t1 ID=Ggra8875.t1|Name=Ggra8875.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=681bp|location=Sequence derived from alignment at tig00000860_pilon:612764..613444- (Gracilaria gracilis GNS1m male)
ATGACCTCACCCGTTCTATTCAATAGAGGGCCACGGGAAGCGTCAGAAAT
AGTTATCTTTCCGCCGATACTTAGATGCTTGGTTTGGTTCTTCGTCTCGT
CGTCATCGTCTTTGAAACTGGGGGTGGCCTTTGGGGATACGGGAGAAGTT
TCTAATGGTGTGGAAGACAAAAGCATTGACTGTGAGGGCGCAGGCGAAGT
CTCCACCGGCTTTGAAGGGGAGGCAGGTGGCAGTGATGGCAAGCTGGACG
CTGAAATGGAAGGGGACGCTGTTCTCGTGGATGACGGGGACGCAGACATT
TCAATAGTTGATGGACGCGGTGAAATTGAAGAAGTCAGTTGCGGAGCTTC
AGACGCAATAGGAGCAGACGCATCAACACTGCGAGAAGCACTCGGCGAGA
ATGAAGAAGTCAAGGATGGTAACACGGCTGTCGCACTTGGAGTCGGAGTG
TTCACTGCGTTCTCGGATGGTGCCAGAATACCTTGGGTCGGTATTCCATC
TGAGCCCGATGGGATTGAAACTGTGGTTGACGGCACTGAAGAAGCAACGG
GTGAAGAGATGGCTTCTGACGTCGTGTCGCCCACACTAGTGGCAGAACTT
CCTGTTAGTGATTGCTGTGTCTGCCTCGTCTGTGGCCGGATTGAAGGCAG
TGGTTTGTTATCTGTCAGAGTGTTCCTTTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:612764..613444-

>Ggra8875.t1 ID=Ggra8875.t1|Name=Ggra8875.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=681bp|location=Sequence derived from alignment at tig00000860_pilon:612764..613444- (Gracilaria gracilis GNS1m male)
ATGACCTCACCCGTTCTATTCAATAGAGGGCCACGGGAAGCGTCAGAAAT
AGTTATCTTTCCGCCGATACTTAGATGCTTGGTTTGGTTCTTCGTCTCGT
CGTCATCGTCTTTGAAACTGGGGGTGGCCTTTGGGGATACGGGAGAAGTT
TCTAATGGTGTGGAAGACAAAAGCATTGACTGTGAGGGCGCAGGCGAAGT
CTCCACCGGCTTTGAAGGGGAGGCAGGTGGCAGTGATGGCAAGCTGGACG
CTGAAATGGAAGGGGACGCTGTTCTCGTGGATGACGGGGACGCAGACATT
TCAATAGTTGATGGACGCGGTGAAATTGAAGAAGTCAGTTGCGGAGCTTC
AGACGCAATAGGAGCAGACGCATCAACACTGCGAGAAGCACTCGGCGAGA
ATGAAGAAGTCAAGGATGGTAACACGGCTGTCGCACTTGGAGTCGGAGTG
TTCACTGCGTTCTCGGATGGTGCCAGAATACCTTGGGTCGGTATTCCATC
TGAGCCCGATGGGATTGAAACTGTGGTTGACGGCACTGAAGAAGCAACGG
GTGAAGAGATGGCTTCTGACGTCGTGTCGCCCACACTAGTGGCAGAACTT
CCTGTTAGTGATTGCTGTGTCTGCCTCGTCTGTGGCCGGATTGAAGGCAG
TGGTTTGTTATCTGTCAGAGTGTTCCTTTGA
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