Ggra8872.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8872.t1
Unique NameGgra8872.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length531
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:599703..601473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CML049CT
Preferred nameGLUD1
PFAMsELFV_dehydrog,ELFV_dehydrog_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00006,RC02799
KEGG koko:K00261
KEGG ReactionR00243,R00248
KEGG Pathwayko00220,ko00250,ko00471,ko00910,ko01100,ko01200,ko04217,ko04964,map00220,map00250,map00471,map00910,map01100,map01200,map04217,map04964
KEGG ModuleM00740
GOsGO:0000003,GO:0000166,GO:0001882,GO:0001883,GO:0002791,GO:0002793,GO:0003008,GO:0003674,GO:0003824,GO:0004352,GO:0004353,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006082,GO:0006103,GO:0006106,GO:0006116,GO:0006139,GO:0006520,GO:0006536,GO:0006537,GO:0006538,GO:0006541,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0007275,GO:0007276,GO:0007283,GO:0007399,GO:0007417,GO:0007420,GO:0007610,GO:0007611,GO:0007613,GO:0007616,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009065,GO:0009084,GO:0009117,GO:0009987,GO:0010035,GO:0010038,GO:0010044,GO:0010646,GO:0010647,GO:0010817,GO:0016020,GO:0016043,GO:0016053,GO:0016054,GO:0016491,GO:0016597,GO:0016638,GO:0016639,GO:0017076,GO:0019001,GO:0019362,GO:0019551,GO:0019637,GO:0019674,GO:0019752,GO:0019866,GO:0019899,GO:0019953,GO:0021549,GO:0022037,GO:0022414,GO:0023051,GO:0023056,GO:0030554,GO:0030902,GO:0031090,GO:0031406,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032024,GO:0032501,GO:0032502,GO:0032504,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0032879,GO:0032880,GO:0034641,GO:0035639,GO:0036094,GO:0042221,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043531,GO:0043648,GO:0043649,GO:0043650,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046394,GO:0046395,GO:0046483,GO:0046496,GO:0046883,GO:0046887,GO:0048037,GO:0048232,GO:0048513,GO:0048518,GO:0048522,GO:0048609,GO:0048731,GO:0048856,GO:0050662,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050796,GO:0050877,GO:0050890,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051186,GO:0051222,GO:0051223,GO:0051287,GO:0051704,GO:0055086,GO:0055114,GO:0060322,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0070403,GO:0070728,GO:0071704,GO:0071840,GO:0072350,GO:0072524,GO:0090087,GO:0090276,GO:0090277,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607,GO:1903530,GO:1903532,GO:1904951
Evalue4.74e-155
EggNOG OGsCOG0334@1|root,KOG2250@2759|Eukaryota
EC1.4.1.3
Descriptionglutamate dehydrogenase [NAD(P) ] activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8872Ggra8872Gracilaria gracilis GNS1m malegenetig00000860_pilon 599703..601473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8872.t1Ggra8872.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 599703..601473 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8872.t1.start1Ggra8872.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 599703..599705 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8872.t1.CDS1Ggra8872.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 599703..600294 +
Ggra8872.t1.CDS2Ggra8872.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 600384..600423 +
Ggra8872.t1.CDS3Ggra8872.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000860_pilon 600513..601473 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8872.t1.exon1Ggra8872.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 599703..600294 +
Ggra8872.t1.exon2Ggra8872.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 600384..600423 +
Ggra8872.t1.exon3Ggra8872.t1.exon3Gracilaria gracilis GNS1m maleexontig00000860_pilon 600513..601473 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8872.t1.intron1Ggra8872.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 600295..600383 +
Ggra8872.t1.intron2Ggra8872.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000860_pilon 600424..600512 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8872.t1.stop1Ggra8872.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 601471..601473 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8872.t1 ID=Ggra8872.t1|Name=Ggra8872.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=531bp
MSARFLALVRRTAPALTARSPLFSSYSLSHHVRTAKSSRPSKEAMPAMIT
VPEPSADAPTFLESVEHFFSRASGLTDIHPGMMEVIRACNSVVEFRFPLQ
RDDGSVEVLTGYRAQHSTHVLPTKGGIRYAPDVNLQEVKALAALMTLKCA
LVDVPFGGAKGGVCIDRRAYSTEELQRVTRRFTHELHARNLIGSGKDVPA
PDYGTGAQEMSWIRDTFSQLNPGHMFTAGCVTGKPVGHGGIRGRESATGL
GVFYAIRSVLDKASVLKKVGLSSPGIEGKTFVIQGFGNVGYWTSKFIHED
GGKIVAIGERDGILYDHDNGIDVDALKEHIDEYGSIEGFTNEGSPTFRLI
PDTSVCCSIECDVLVPAALESVIHGDNVDTVQAKIIAEAANGPITADADD
ILNERGNIVVIPDLLANSMGVMCSYVEWTKNMTGMRLGRLTKRFEESHGR
HLVEVLESNGIKLSGQQKSNVIAGADEETHVRSGLEDTMIAACSQVVEIA
EEKNCSLRDAAYIKALESIAEHYCRAGNWP*
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spliced messenger RNA

>Ggra8872.t1 ID=Ggra8872.t1|Name=Ggra8872.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1593bp|location=Sequence derived from alignment at tig00000860_pilon:599703..601473+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCACGCTTCCTCGCGCTGGTGCGCCGCACCGCACCAGCGTTGAC
CGCTCGTTCTCCTCTGTTCTCCTCGTATTCCCTCTCCCATCATGTCCGTA
CGGCAAAATCCTCGCGCCCCTCCAAAGAAGCCATGCCCGCCATGATCACC
GTTCCTGAGCCATCTGCGGACGCACCAACTTTCCTGGAGTCAGTGGAACA
CTTCTTCAGTCGTGCATCAGGGCTTACTGATATTCACCCTGGTATGATGG
AAGTCATCCGTGCTTGCAACTCGGTGGTTGAATTCCGCTTCCCTCTCCAA
CGTGATGATGGTTCTGTTGAAGTTCTTACCGGCTACAGAGCTCAGCATTC
TACTCATGTCTTGCCTACCAAAGGTGGAATTCGTTACGCTCCTGACGTCA
ATTTGCAAGAGGTGAAAGCGTTGGCCGCGCTCATGACGCTGAAGTGCGCA
CTTGTTGACGTTCCCTTTGGAGGCGCTAAGGGTGGTGTCTGCATCGATCG
CAGGGCGTACTCTACGGAAGAGTTACAACGCGTCACAAGGCGTTTCACTC
ACGAACTGCACGCGAGGAATCTTATCGGTAGTGGGAAAGACGTCCCTGCA
CCAGACTACGGAACAGGCGCACAGGAGATGAGCTGGATTCGTGATACCTT
TTCTCAGCTTAACCCAGGACACATGTTCACTGCAGGGTGCGTCACTGGAA
AACCAGTTGGACATGGGGGAATTCGCGGTCGCGAAAGCGCTACGGGTCTG
GGTGTGTTCTATGCAATTCGTTCAGTACTGGACAAAGCTTCAGTCTTGAA
GAAGGTTGGTCTCTCCTCTCCAGGCATCGAAGGGAAGACCTTTGTTATTC
AAGGTTTCGGCAACGTTGGGTATTGGACTTCCAAGTTCATTCACGAAGAC
GGTGGTAAGATTGTTGCTATCGGCGAAAGGGACGGTATTCTTTACGACCA
TGACAACGGCATTGATGTCGATGCCTTAAAGGAGCATATTGATGAGTATG
GTTCCATCGAAGGATTTACGAACGAAGGTAGCCCAACCTTCAGACTGATC
CCTGACACGAGCGTATGCTGTTCCATTGAATGTGATGTTCTAGTTCCTGC
AGCCCTGGAGAGCGTGATCCATGGCGACAATGTCGATACGGTGCAAGCCA
AGATTATCGCAGAGGCAGCGAACGGTCCGATAACAGCAGATGCCGATGAT
ATCCTGAACGAAAGGGGTAACATAGTTGTTATCCCGGACTTGCTTGCCAA
TAGTATGGGTGTGATGTGTTCATATGTGGAGTGGACCAAGAACATGACCG
GTATGCGCCTCGGTCGCCTGACAAAGAGATTCGAAGAGAGTCATGGGCGT
CATCTTGTTGAAGTACTCGAGAGCAACGGAATCAAACTTTCTGGTCAACA
AAAGAGTAACGTCATCGCTGGAGCGGACGAGGAAACTCACGTGCGCTCAG
GACTGGAAGATACAATGATTGCTGCCTGTTCACAAGTTGTTGAGATTGCC
GAAGAGAAGAATTGTTCATTGCGTGACGCGGCGTACATCAAGGCACTGGA
ATCAATTGCCGAACACTATTGCAGAGCGGGCAACTGGCCGTGA
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protein sequence of Ggra8872.t1

>Ggra8872.t1 ID=Ggra8872.t1|Name=Ggra8872.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=531bp
MSARFLALVRRTAPALTARSPLFSSYSLSHHVRTAKSSRPSKEAMPAMIT
VPEPSADAPTFLESVEHFFSRASGLTDIHPGMMEVIRACNSVVEFRFPLQ
RDDGSVEVLTGYRAQHSTHVLPTKGGIRYAPDVNLQEVKALAALMTLKCA
LVDVPFGGAKGGVCIDRRAYSTEELQRVTRRFTHELHARNLIGSGKDVPA
PDYGTGAQEMSWIRDTFSQLNPGHMFTAGCVTGKPVGHGGIRGRESATGL
GVFYAIRSVLDKASVLKKVGLSSPGIEGKTFVIQGFGNVGYWTSKFIHED
GGKIVAIGERDGILYDHDNGIDVDALKEHIDEYGSIEGFTNEGSPTFRLI
PDTSVCCSIECDVLVPAALESVIHGDNVDTVQAKIIAEAANGPITADADD
ILNERGNIVVIPDLLANSMGVMCSYVEWTKNMTGMRLGRLTKRFEESHGR
HLVEVLESNGIKLSGQQKSNVIAGADEETHVRSGLEDTMIAACSQVVEIA
EEKNCSLRDAAYIKALESIAEHYCRAGNWP*
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mRNA from alignment at tig00000860_pilon:599703..601473+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8872.t1 ID=Ggra8872.t1|Name=Ggra8872.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1771bp|location=Sequence derived from alignment at tig00000860_pilon:599703..601473+ (Gracilaria gracilis GNS1m male)
ATGTCTGCACGCTTCCTCGCGCTGGTGCGCCGCACCGCACCAGCGTTGAC
CGCTCGTTCTCCTCTGTTCTCCTCGTATTCCCTCTCCCATCATGTCCGTA
CGGCAAAATCCTCGCGCCCCTCCAAAGAAGCCATGCCCGCCATGATCACC
GTTCCTGAGCCATCTGCGGACGCACCAACTTTCCTGGAGTCAGTGGAACA
CTTCTTCAGTCGTGCATCAGGGCTTACTGATATTCACCCTGGTATGATGG
AAGTCATCCGTGCTTGCAACTCGGTGGTTGAATTCCGCTTCCCTCTCCAA
CGTGATGATGGTTCTGTTGAAGTTCTTACCGGCTACAGAGCTCAGCATTC
TACTCATGTCTTGCCTACCAAAGGTGGAATTCGTTACGCTCCTGACGTCA
ATTTGCAAGAGGTGAAAGCGTTGGCCGCGCTCATGACGCTGAAGTGCGCA
CTTGTTGACGTTCCCTTTGGAGGCGCTAAGGGTGGTGTCTGCATCGATCG
CAGGGCGTACTCTACGGAAGAGTTACAACGCGTCACAAGGCGTTTCACTC
ACGAACTGCACGCGAGGAATCTTATCGGTAGTGGGAAAGACGGTAAGTTG
AAGAGAATAGCTTGTACTACCTCATGTACCGGAACCCAATCCAATCCCTA
ACTCTAATGGTTTAACCTTTTTATGATACAGTCCCTGCACCAGACTACGG
AACAGGCGCACAGGAGATGAGGTAAGTGCTCGAACTACAGCTTTATGCAC
GCTTTGACATTTATGTCCTGATTCTAACGAGCGATCATATGTTTCTTCGT
CCTTTTATAGCTGGATTCGTGATACCTTTTCTCAGCTTAACCCAGGACAC
ATGTTCACTGCAGGGTGCGTCACTGGAAAACCAGTTGGACATGGGGGAAT
TCGCGGTCGCGAAAGCGCTACGGGTCTGGGTGTGTTCTATGCAATTCGTT
CAGTACTGGACAAAGCTTCAGTCTTGAAGAAGGTTGGTCTCTCCTCTCCA
GGCATCGAAGGGAAGACCTTTGTTATTCAAGGTTTCGGCAACGTTGGGTA
TTGGACTTCCAAGTTCATTCACGAAGACGGTGGTAAGATTGTTGCTATCG
GCGAAAGGGACGGTATTCTTTACGACCATGACAACGGCATTGATGTCGAT
GCCTTAAAGGAGCATATTGATGAGTATGGTTCCATCGAAGGATTTACGAA
CGAAGGTAGCCCAACCTTCAGACTGATCCCTGACACGAGCGTATGCTGTT
CCATTGAATGTGATGTTCTAGTTCCTGCAGCCCTGGAGAGCGTGATCCAT
GGCGACAATGTCGATACGGTGCAAGCCAAGATTATCGCAGAGGCAGCGAA
CGGTCCGATAACAGCAGATGCCGATGATATCCTGAACGAAAGGGGTAACA
TAGTTGTTATCCCGGACTTGCTTGCCAATAGTATGGGTGTGATGTGTTCA
TATGTGGAGTGGACCAAGAACATGACCGGTATGCGCCTCGGTCGCCTGAC
AAAGAGATTCGAAGAGAGTCATGGGCGTCATCTTGTTGAAGTACTCGAGA
GCAACGGAATCAAACTTTCTGGTCAACAAAAGAGTAACGTCATCGCTGGA
GCGGACGAGGAAACTCACGTGCGCTCAGGACTGGAAGATACAATGATTGC
TGCCTGTTCACAAGTTGTTGAGATTGCCGAAGAGAAGAATTGTTCATTGC
GTGACGCGGCGTACATCAAGGCACTGGAATCAATTGCCGAACACTATTGC
AGAGCGGGCAACTGGCCGTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:599703..601473+

>Ggra8872.t1 ID=Ggra8872.t1|Name=Ggra8872.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1593bp|location=Sequence derived from alignment at tig00000860_pilon:599703..601473+ (Gracilaria gracilis GNS1m male)
ATGTCTGCACGCTTCCTCGCGCTGGTGCGCCGCACCGCACCAGCGTTGAC
CGCTCGTTCTCCTCTGTTCTCCTCGTATTCCCTCTCCCATCATGTCCGTA
CGGCAAAATCCTCGCGCCCCTCCAAAGAAGCCATGCCCGCCATGATCACC
GTTCCTGAGCCATCTGCGGACGCACCAACTTTCCTGGAGTCAGTGGAACA
CTTCTTCAGTCGTGCATCAGGGCTTACTGATATTCACCCTGGTATGATGG
AAGTCATCCGTGCTTGCAACTCGGTGGTTGAATTCCGCTTCCCTCTCCAA
CGTGATGATGGTTCTGTTGAAGTTCTTACCGGCTACAGAGCTCAGCATTC
TACTCATGTCTTGCCTACCAAAGGTGGAATTCGTTACGCTCCTGACGTCA
ATTTGCAAGAGGTGAAAGCGTTGGCCGCGCTCATGACGCTGAAGTGCGCA
CTTGTTGACGTTCCCTTTGGAGGCGCTAAGGGTGGTGTCTGCATCGATCG
CAGGGCGTACTCTACGGAAGAGTTACAACGCGTCACAAGGCGTTTCACTC
ACGAACTGCACGCGAGGAATCTTATCGGTAGTGGGAAAGACGTCCCTGCA
CCAGACTACGGAACAGGCGCACAGGAGATGAGCTGGATTCGTGATACCTT
TTCTCAGCTTAACCCAGGACACATGTTCACTGCAGGGTGCGTCACTGGAA
AACCAGTTGGACATGGGGGAATTCGCGGTCGCGAAAGCGCTACGGGTCTG
GGTGTGTTCTATGCAATTCGTTCAGTACTGGACAAAGCTTCAGTCTTGAA
GAAGGTTGGTCTCTCCTCTCCAGGCATCGAAGGGAAGACCTTTGTTATTC
AAGGTTTCGGCAACGTTGGGTATTGGACTTCCAAGTTCATTCACGAAGAC
GGTGGTAAGATTGTTGCTATCGGCGAAAGGGACGGTATTCTTTACGACCA
TGACAACGGCATTGATGTCGATGCCTTAAAGGAGCATATTGATGAGTATG
GTTCCATCGAAGGATTTACGAACGAAGGTAGCCCAACCTTCAGACTGATC
CCTGACACGAGCGTATGCTGTTCCATTGAATGTGATGTTCTAGTTCCTGC
AGCCCTGGAGAGCGTGATCCATGGCGACAATGTCGATACGGTGCAAGCCA
AGATTATCGCAGAGGCAGCGAACGGTCCGATAACAGCAGATGCCGATGAT
ATCCTGAACGAAAGGGGTAACATAGTTGTTATCCCGGACTTGCTTGCCAA
TAGTATGGGTGTGATGTGTTCATATGTGGAGTGGACCAAGAACATGACCG
GTATGCGCCTCGGTCGCCTGACAAAGAGATTCGAAGAGAGTCATGGGCGT
CATCTTGTTGAAGTACTCGAGAGCAACGGAATCAAACTTTCTGGTCAACA
AAAGAGTAACGTCATCGCTGGAGCGGACGAGGAAACTCACGTGCGCTCAG
GACTGGAAGATACAATGATTGCTGCCTGTTCACAAGTTGTTGAGATTGCC
GAAGAGAAGAATTGTTCATTGCGTGACGCGGCGTACATCAAGGCACTGGA
ATCAATTGCCGAACACTATTGCAGAGCGGGCAACTGGCCGTGA
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