Ggra8871.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8871.t1
Unique NameGgra8871.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length616
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:593917..595952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog31033.ENSTRUP00000009260
Preferred nameKAT8
PFAMsMOZ_SAS,Tudor-knot
Max annot lvl33208|Metazoa
KEGG koko:K11308
GOsGO:0000075,GO:0000077,GO:0000123,GO:0000228,GO:0000775,GO:0000776,GO:0000803,GO:0000805,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003729,GO:0003824,GO:0004402,GO:0004468,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005694,GO:0005700,GO:0005705,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007275,GO:0007549,GO:0008080,GO:0008134,GO:0008150,GO:0008152,GO:0009047,GO:0009314,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010212,GO:0010468,GO:0010485,GO:0010506,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010941,GO:0016043,GO:0016407,GO:0016410,GO:0016456,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023052,GO:0030097,GO:0030099,GO:0030154,GO:0030330,GO:0031056,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031399,GO:0031570,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034212,GO:0034641,GO:0034708,GO:0035064,GO:0035065,GO:0035097,GO:0035556,GO:0036211,GO:0040029,GO:0042393,GO:0042770,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043967,GO:0043981,GO:0043982,GO:0043984,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044545,GO:0044665,GO:0045786,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0046536,GO:0046972,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0060548,GO:0061733,GO:0065007,GO:0065009,GO:0070013,GO:0071214,GO:0071339,GO:0071478,GO:0071479,GO:0071704,GO:0071840,GO:0072331,GO:0072487,GO:0080090,GO:0080134,GO:0080135,GO:0090239,GO:0090304,GO:0097159,GO:0098687,GO:0104004,GO:0140030,GO:0140034,GO:1901360,GO:1901363,GO:1901564,GO:1901983,GO:1902275,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:1990904,GO:2000112,GO:2000113,GO:2000756,GO:2000873,GO:2001020,GO:2001141
Evalue1.01e-72
EggNOG OGsCOG5027@1|root,KOG2747@2759|Eukaryota,38BNE@33154|Opisthokonta,3BDSJ@33208|Metazoa,3CUTJ@33213|Bilateria,4804M@7711|Chordata,48YZ0@7742|Vertebrata,49Y3Y@7898|Actinopterygii
EC2.3.1.48
DescriptionBelongs to the MYST (SAS MOZ) family
COG categoryB
BRITEko00000,ko01000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8871Ggra8871Gracilaria gracilis GNS1m malegenetig00000860_pilon 593917..595952 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8871.t1Ggra8871.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 593917..595952 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8871.t1.start1Ggra8871.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 593917..593919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8871.t1.CDS1Ggra8871.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 593917..595633 +
Ggra8871.t1.CDS2Ggra8871.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 595822..595952 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8871.t1.exon1Ggra8871.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 593917..595633 +
Ggra8871.t1.exon2Ggra8871.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 595822..595952 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8871.t1.intron1Ggra8871.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 595634..595821 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8871.t1.stop1Ggra8871.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 595950..595952 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8871.t1 ID=Ggra8871.t1|Name=Ggra8871.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=616bp
MAAANWSLAPPDPAFLPIDLNAPPPLWLPPKPVTLVPPHPVSRGLVYISF
VGRDKRLDRWARAHELVRATPAQVNAVKKGPSSHVTAKPEVKLTRARRRA
KAASNPVSEDLYVQDLAHMELEQLKNFKIKNVSKVLLSPYFIDAWYHSPF
PLPDNVHKLYVCDKCLHYVFTKRHFSQHLSGCTWNTPPGSLLYEDIDRRI
SVYEIDSIASPRYCQALCLLAKLFLDHKTLFCDVTPFLFYVVTHNGELAG
FFSKEHPTIQSEFNVACILTFPPHQKKGIGKFLISLSYELTRREGKTAGP
EHPLSDLGQLSYRSYWKYAIVRYLRHRDERPSICAKVSVNEISQATGIRF
DDVVLTLKDTNLYSLWKGEHFADANRITIELVETGIKPGRLPFMSEKLRY
SVFVSNLPSSPLRPQLPRQSRPKRPKTPKTTKCKKEVTNLVIDSPITERN
RVPGQRSSSINSSGTSVSLPEFNSEQTQRLSNFIQTHTPERVFAAMEVCG
KSLDLKKYIQSLAEELKLDYDTICRRLVKMTTASMQNKSPHFANSRRLRN
GISKTHKSRNGELKVQHGISRNDVAGRTGRAVGHLSSLAVEERRCGRYTF
IPLRTAMLKARFLLE*
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spliced messenger RNA

>Ggra8871.t1 ID=Ggra8871.t1|Name=Ggra8871.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1848bp|location=Sequence derived from alignment at tig00000860_pilon:593917..595952+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggccgctgctaactggtcgctcgcgcctcccgacccagcctttcttcc
aatcgatctcaatgcaccgccgccgctgtggcttCCGCCGAAGCCCGTCA
CGCTCGTCCCGCCGCACCCCGTGTCGCGCGGTCTAGTCTACATCTCCTTC
GTGGGCCGCGACAAGCGCCTGGACAGGTGGGCCCGCGCCCACGAGCTCGT
CCGAGCAACCCCGGCCCAGGTCAACGCCGTCAAGAAAGGCCCTTCGTCCC
ATGTCACCGCAAAACCTGAGGTCAAGCTCACCAGGGCTCGCAGACGCGCA
AAGGCCGCTTCCAATCCCGTCTCCGAGGATCTCTACGTGCAAGACCTCGC
CCACATGGAGCTTGAACAGCTCAAGAACTTCAAGATCAAGAACGTCTCaa
aagttcttctcagtccttatttcattgacgcatggtaccattccccgttt
ccactccctgacaaCGTCCATAAGCTGTACGTTTGTGACAAGTGCCTGCA
TTATGTCTTTACAAAACGCCATTTCTCGCAGCATCTCTCCGGTTGCACAT
GGAACACCCCTCCAGGGTCTTTGCTTTACGAAGACATTGACCGGCGTATT
TCTGTGTACGAGATAGATTCAATAGCCAGCCCACGCTACTGTCAAGCTCT
GTGCTTACTTGCAAAACTTTTCCTCGATCACAAAACGCTCTTCTGCGACG
TTACTCCCTTCTTGTTCTACGTCGTTACTCACAATGGCGAATTAGCTGGG
TTTTTCTCAAAGGAACACCCAACAATACAATCCGAGTTCAACGTTGCTTG
TATTCTAACCTTCCCGCCCCATCAGAAGAAGGGCATTGGCAAGTTCCTCA
TATCGCTCAGCTACGAGCTCACCAGGAGGGAGGGTAAGACTGCTGGCCCA
GAGCACCCCTTATCCGATCTGGGTCAGCTCAGCTATCGCAGCTACTGGAA
GTATGCCATTGTACGCTACCTGAGACATCGTGATGAAAGGCCATCCATCT
GTGCCAAAGTTAGCGTCAACGAGATATCGCAGGCGACTGGAATCCGATTC
GACGATGTAGTCTTAACCTTGAAAGATACAAATCTGTACTCGTTATGGAA
AGGAGAGCATTTCGCAGACGCCAATCGCATTACCATAGAGCTTGTCGAGA
CTGGTATCAAGCCAGGGCGCTTGCCGTTCATGTCCGAGAAGTTGCGATAT
AGCGTTTTTGTGTCAAACTTGCCTTCATCTCCGCTTCGTCCGCAGCTACC
GCGGCAGTCAAGACCAAAGAGACCAAAAACACCAAAAACAACAAAGTGTA
AAAAGGAGGTCACCAATTTGGTCATCGATTCTCCGATCACAGAGAGGAAT
CGGGTTCCTGGGCAACGTTCTTCCAGTATCAACTCCTCTGGGACTTCTGT
TTCTCTTCCAGAGTTCAATAGTGAACAAACCCAACGTTTGAGCAATTTCA
TACAAACCCATACGCCGGAACGTGTGTTTGCTGCAATGGAAGTGTGTGGT
AAATCCTTGGACCTTAAAAAATATATTCAATCTCTTGCGGAAGAACTAAA
ACTAGACTACGACACAATATGTCGTCGACTGGTGAAGATGACCACCGCAA
GTATGCAGAATAAGTCACCCCATTTCGCGAATTCACGTAGACTGCGGAAC
GGTATTTCAAAAACACACAAGTCCCGAAACGGTGAGCTGAAGGTTCAGCA
TGGCATCTCAAGGAATGATGTTGCTGGCCGAACTGGAAGGGCTGTGGGCC
ATCTGAGCTCTTTGGCTGTTGAGGAGCGCAGGTGTGGCAGGTATACTTTC
ATTCCTCTAAGAACTGCTATGCTCAAAGCACGTTTCTTGTTGGAATAG
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protein sequence of Ggra8871.t1

>Ggra8871.t1 ID=Ggra8871.t1|Name=Ggra8871.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=616bp
MAAANWSLAPPDPAFLPIDLNAPPPLWLPPKPVTLVPPHPVSRGLVYISF
VGRDKRLDRWARAHELVRATPAQVNAVKKGPSSHVTAKPEVKLTRARRRA
KAASNPVSEDLYVQDLAHMELEQLKNFKIKNVSKVLLSPYFIDAWYHSPF
PLPDNVHKLYVCDKCLHYVFTKRHFSQHLSGCTWNTPPGSLLYEDIDRRI
SVYEIDSIASPRYCQALCLLAKLFLDHKTLFCDVTPFLFYVVTHNGELAG
FFSKEHPTIQSEFNVACILTFPPHQKKGIGKFLISLSYELTRREGKTAGP
EHPLSDLGQLSYRSYWKYAIVRYLRHRDERPSICAKVSVNEISQATGIRF
DDVVLTLKDTNLYSLWKGEHFADANRITIELVETGIKPGRLPFMSEKLRY
SVFVSNLPSSPLRPQLPRQSRPKRPKTPKTTKCKKEVTNLVIDSPITERN
RVPGQRSSSINSSGTSVSLPEFNSEQTQRLSNFIQTHTPERVFAAMEVCG
KSLDLKKYIQSLAEELKLDYDTICRRLVKMTTASMQNKSPHFANSRRLRN
GISKTHKSRNGELKVQHGISRNDVAGRTGRAVGHLSSLAVEERRCGRYTF
IPLRTAMLKARFLLE*
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mRNA from alignment at tig00000860_pilon:593917..595952+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8871.t1 ID=Ggra8871.t1|Name=Ggra8871.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2036bp|location=Sequence derived from alignment at tig00000860_pilon:593917..595952+ (Gracilaria gracilis GNS1m male)
atggccgctgctaactggtcgctcgcgcctcccgacccagcctttcttcc
aatcgatctcaatgcaccgccgccgctgtggcttCCGCCGAAGCCCGTCA
CGCTCGTCCCGCCGCACCCCGTGTCGCGCGGTCTAGTCTACATCTCCTTC
GTGGGCCGCGACAAGCGCCTGGACAGGTGGGCCCGCGCCCACGAGCTCGT
CCGAGCAACCCCGGCCCAGGTCAACGCCGTCAAGAAAGGCCCTTCGTCCC
ATGTCACCGCAAAACCTGAGGTCAAGCTCACCAGGGCTCGCAGACGCGCA
AAGGCCGCTTCCAATCCCGTCTCCGAGGATCTCTACGTGCAAGACCTCGC
CCACATGGAGCTTGAACAGCTCAAGAACTTCAAGATCAAGAACGTCTCaa
aagttcttctcagtccttatttcattgacgcatggtaccattccccgttt
ccactccctgacaaCGTCCATAAGCTGTACGTTTGTGACAAGTGCCTGCA
TTATGTCTTTACAAAACGCCATTTCTCGCAGCATCTCTCCGGTTGCACAT
GGAACACCCCTCCAGGGTCTTTGCTTTACGAAGACATTGACCGGCGTATT
TCTGTGTACGAGATAGATTCAATAGCCAGCCCACGCTACTGTCAAGCTCT
GTGCTTACTTGCAAAACTTTTCCTCGATCACAAAACGCTCTTCTGCGACG
TTACTCCCTTCTTGTTCTACGTCGTTACTCACAATGGCGAATTAGCTGGG
TTTTTCTCAAAGGAACACCCAACAATACAATCCGAGTTCAACGTTGCTTG
TATTCTAACCTTCCCGCCCCATCAGAAGAAGGGCATTGGCAAGTTCCTCA
TATCGCTCAGCTACGAGCTCACCAGGAGGGAGGGTAAGACTGCTGGCCCA
GAGCACCCCTTATCCGATCTGGGTCAGCTCAGCTATCGCAGCTACTGGAA
GTATGCCATTGTACGCTACCTGAGACATCGTGATGAAAGGCCATCCATCT
GTGCCAAAGTTAGCGTCAACGAGATATCGCAGGCGACTGGAATCCGATTC
GACGATGTAGTCTTAACCTTGAAAGATACAAATCTGTACTCGTTATGGAA
AGGAGAGCATTTCGCAGACGCCAATCGCATTACCATAGAGCTTGTCGAGA
CTGGTATCAAGCCAGGGCGCTTGCCGTTCATGTCCGAGAAGTTGCGATAT
AGCGTTTTTGTGTCAAACTTGCCTTCATCTCCGCTTCGTCCGCAGCTACC
GCGGCAGTCAAGACCAAAGAGACCAAAAACACCAAAAACAACAAAGTGTA
AAAAGGAGGTCACCAATTTGGTCATCGATTCTCCGATCACAGAGAGGAAT
CGGGTTCCTGGGCAACGTTCTTCCAGTATCAACTCCTCTGGGACTTCTGT
TTCTCTTCCAGAGTTCAATAGTGAACAAACCCAACGTTTGAGCAATTTCA
TACAAACCCATACGCCGGAACGTGTGTTTGCTGCAATGGAAGTGTGTGGT
AAATCCTTGGACCTTAAAAAATATATTCAATCTCTTGCGGAAGAACTAAA
ACTAGACTACGACACAATATGTCGTCGACTGGTGAAGATGACCACCGCAA
GTATGCAGAATAAGTCACCCCATTTCGCGAATTCACGTAGACTGCGGAAC
GGTATTTCAAAAACACACAAGTCCCGAAACGGTGAGCTGAAGGTTCAGCA
TGGCATCTCAAGGAATGGtaagctgaaccacgtgaggcgtcatgatatga
aaactttgccgaaagatttcatgctcgttggtggccgacataatggcaca
cgttctggatataccaccccaagaaaagagtcagatattgtgtacATTGC
ATCGCAATCTTCTGACGATTGATTCGCTATTTCTTTTCGGTACTGCCGCA
TATAGATGTTGCTGGCCGAACTGGAAGGGCTGTGGGCCATCTGAGCTCTT
TGGCTGTTGAGGAGCGCAGGTGTGGCAGGTATACTTTCATTCCTCTAAGA
ACTGCTATGCTCAAAGCACGTTTCTTGTTGGAATAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:593917..595952+

>Ggra8871.t1 ID=Ggra8871.t1|Name=Ggra8871.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1848bp|location=Sequence derived from alignment at tig00000860_pilon:593917..595952+ (Gracilaria gracilis GNS1m male)
atggccgctgctaactggtcgctcgcgcctcccgacccagcctttcttcc
aatcgatctcaatgcaccgccgccgctgtggcttCCGCCGAAGCCCGTCA
CGCTCGTCCCGCCGCACCCCGTGTCGCGCGGTCTAGTCTACATCTCCTTC
GTGGGCCGCGACAAGCGCCTGGACAGGTGGGCCCGCGCCCACGAGCTCGT
CCGAGCAACCCCGGCCCAGGTCAACGCCGTCAAGAAAGGCCCTTCGTCCC
ATGTCACCGCAAAACCTGAGGTCAAGCTCACCAGGGCTCGCAGACGCGCA
AAGGCCGCTTCCAATCCCGTCTCCGAGGATCTCTACGTGCAAGACCTCGC
CCACATGGAGCTTGAACAGCTCAAGAACTTCAAGATCAAGAACGTCTCaa
aagttcttctcagtccttatttcattgacgcatggtaccattccccgttt
ccactccctgacaaCGTCCATAAGCTGTACGTTTGTGACAAGTGCCTGCA
TTATGTCTTTACAAAACGCCATTTCTCGCAGCATCTCTCCGGTTGCACAT
GGAACACCCCTCCAGGGTCTTTGCTTTACGAAGACATTGACCGGCGTATT
TCTGTGTACGAGATAGATTCAATAGCCAGCCCACGCTACTGTCAAGCTCT
GTGCTTACTTGCAAAACTTTTCCTCGATCACAAAACGCTCTTCTGCGACG
TTACTCCCTTCTTGTTCTACGTCGTTACTCACAATGGCGAATTAGCTGGG
TTTTTCTCAAAGGAACACCCAACAATACAATCCGAGTTCAACGTTGCTTG
TATTCTAACCTTCCCGCCCCATCAGAAGAAGGGCATTGGCAAGTTCCTCA
TATCGCTCAGCTACGAGCTCACCAGGAGGGAGGGTAAGACTGCTGGCCCA
GAGCACCCCTTATCCGATCTGGGTCAGCTCAGCTATCGCAGCTACTGGAA
GTATGCCATTGTACGCTACCTGAGACATCGTGATGAAAGGCCATCCATCT
GTGCCAAAGTTAGCGTCAACGAGATATCGCAGGCGACTGGAATCCGATTC
GACGATGTAGTCTTAACCTTGAAAGATACAAATCTGTACTCGTTATGGAA
AGGAGAGCATTTCGCAGACGCCAATCGCATTACCATAGAGCTTGTCGAGA
CTGGTATCAAGCCAGGGCGCTTGCCGTTCATGTCCGAGAAGTTGCGATAT
AGCGTTTTTGTGTCAAACTTGCCTTCATCTCCGCTTCGTCCGCAGCTACC
GCGGCAGTCAAGACCAAAGAGACCAAAAACACCAAAAACAACAAAGTGTA
AAAAGGAGGTCACCAATTTGGTCATCGATTCTCCGATCACAGAGAGGAAT
CGGGTTCCTGGGCAACGTTCTTCCAGTATCAACTCCTCTGGGACTTCTGT
TTCTCTTCCAGAGTTCAATAGTGAACAAACCCAACGTTTGAGCAATTTCA
TACAAACCCATACGCCGGAACGTGTGTTTGCTGCAATGGAAGTGTGTGGT
AAATCCTTGGACCTTAAAAAATATATTCAATCTCTTGCGGAAGAACTAAA
ACTAGACTACGACACAATATGTCGTCGACTGGTGAAGATGACCACCGCAA
GTATGCAGAATAAGTCACCCCATTTCGCGAATTCACGTAGACTGCGGAAC
GGTATTTCAAAAACACACAAGTCCCGAAACGGTGAGCTGAAGGTTCAGCA
TGGCATCTCAAGGAATGATGTTGCTGGCCGAACTGGAAGGGCTGTGGGCC
ATCTGAGCTCTTTGGCTGTTGAGGAGCGCAGGTGTGGCAGGTATACTTTC
ATTCCTCTAAGAACTGCTATGCTCAAAGCACGTTTCTTGTTGGAATAG
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