Ggra8868.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8868.t1
Unique NameGgra8868.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length555
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:580381..582183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S123_155V6.1
PFAMsWD40
Max annot lvl35493|Streptophyta
KEGG koko:K22382
GOsGO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006970,GO:0008150,GO:0009314,GO:0009416,GO:0009628,GO:0009719,GO:0009723,GO:0009725,GO:0009733,GO:0009737,GO:0010033,GO:0033993,GO:0042221,GO:0044424,GO:0044464,GO:0050896,GO:0097305,GO:1901700
Evalue4.49e-95
EggNOG OGsKOG0293@1|root,KOG0293@2759|Eukaryota,37KWQ@33090|Viridiplantae,3GADX@35493|Streptophyta
DescriptionWD repeat-containing protein
COG categoryCE
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8868Ggra8868Gracilaria gracilis GNS1m malegenetig00000860_pilon 580381..582183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8868.t1Ggra8868.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 580381..582183 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8868.t1.start1Ggra8868.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 580381..580383 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8868.t1.CDS1Ggra8868.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 580381..582015 +
Ggra8868.t1.CDS2Ggra8868.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 582154..582183 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8868.t1.exon1Ggra8868.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 580381..582015 +
Ggra8868.t1.exon2Ggra8868.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 582154..582183 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8868.t1.intron1Ggra8868.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 582016..582153 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8868.t1.stop1Ggra8868.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 582181..582183 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8868.t1 ID=Ggra8868.t1|Name=Ggra8868.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=555bp
MNGVNISGNGVHPDVDLLEDTNSSDAPMEPNLTERGLDRHELVRIIVQAI
DALGYSSSARVLEKEADVEAMTQQMRTLRDCVLEGKWEHLEQVLGQVTVF
KSDDDARAARFVLYEQKFLELLEAGHTADALECLRNDLTRVSPDPKLLHK
LPLLCMCTTADEVRDRAEWPGAGPESRTAVLDKLQRYIPASELLQENRLE
NLLWQAIEQQKRDTMFPYTRQSRVSLLEDMVHCEERVPRKILHRLEGHTD
EVWFVQFSHGGEYLASSSKDAVVVVWRSRALLEGKCNKSNSILHKLRGHS
QMVCFLSWSPDDQFLLSTGDDQTIRLWNIKSGECCHVFEKHTGAVTSCAW
MPNGKTFVSGAHDQRMLEWDVESGEVIATYNVPNRVNDLTISSNGKLLVA
TCSDNTIIVFDTGKKQQLSMMNENYSITSLFLSADSQSLLVSINSHEDPE
AIDPEIHVWNIPKQRIVQKLTGFKQTRYVIRACFGGHNQMLVLCGSEDEL
VYIWERRSGKLIAKLRGHEGTVNTIACNESNQNLFASGSDDKTVIIWGPA
NGSK*
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spliced messenger RNA

>Ggra8868.t1 ID=Ggra8868.t1|Name=Ggra8868.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1665bp|location=Sequence derived from alignment at tig00000860_pilon:580381..582183+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGGGGTTAATATATCTGGAAATGGCGTCCATCCTGACGTTGACCT
CCTAGAGGACACAAACTCTTCCGATGCACCTATGGAACCCAATCTTACAG
AACGAGGTTTGGACCGCCATGAGCTCGTTCGAATAATCGTTCAGGCGATC
GATGCTTTGGGTTACAGCTCTTCTGCTCGCGTACTTGAGAAGGAAGCCGA
CGTAGAGGCTATGACACAACAGATGCGAACGTTGCGGGATTGCGTCCTTG
AGGGGAAATGGGAACATTTGGAGCAAGTTCTTGGGCAAGTAACAGTGTTC
AAGTCAGATGATGACGCTCGTGCTGCACGTTTTGTTCTTTACGAACAAAA
GTTTCTCGAGTTGCTTGAGGCTGGACATACAGCAGATGCCTTGGAGTGTT
TGAGAAACGATCTGACTCGCGTAAGCCCAGACCCAAAGCTGCTTCACAAG
CTTCCTCTGCTCTGCATGTGCACAACAGCAGATGAAGTACGGGACCGCGC
AGAGTGGCCGGGTGCCGGCCCGGAGTCGCGCACAGCCGTTCTAGATAAGC
TTCAGCGGTATATTCCTGCAAGCGAACTGTTGCAAGAGAACCGACTGGAG
AACTTACTATGGCAAGCGATTGAACAGCAAAAGCGTGACACAATGTTCCC
ATACACAAGACAGAGCCGTGTAAGCTTGTTAGAAGATATGGTGCACTGCG
AGGAACGTGTTCCGCGAAAGATATTGCATCGTCTGGAGGGCCATACAGAT
GAAGTATGGTTCGTGCAGTTTTCCCACGGGGGTGAGTATCTTGCATCCTC
GTCGAAGGATGCCGTAGTGGTTGTTTGGAGAAGCCGAGCGCTCTTAGAAG
GCAAGTGTAACAAGAGTAATTCAATTCTACATAAGTTGAGGGGCCATTCG
CAGATGGTTTGCTTCTTGAGTTGGTCTCCAGATGATCAATTTCTTCTCAG
CACTGGTGACGACCAGACTATTCGTTTGTGGAACATAAAGTCAGGTGAAT
GTTGTCATGTTTTTGAAAAGCATACTGGTGCTGTCACTTCCTGTGCGTGG
ATGCCAAATGGGAAGACCTTTGTTTCAGGGGCACATGACCAAAGAATGCT
GGAGTGGGACGTTGAAAGCGGAGAAGTAATCGCAACATACAATGTGCCAA
ATCGAGTGAATGATCTTACAATATCCTCCAATGGCAAGCTGCTTGTGGCT
ACGTGCTCAGATAACACAATCATTGTTTTTGACACAGGAAAAAAGCAGCA
GCTTTCTATGATGAACGAGAACTACAGCATCACATCTCTTTTCTTATCTG
CAGATAGTCAGTCCCTTCTTGTGAGTATCAATTCTCATGAGGACCCCGAG
GCGATAGACCCAGAAATTCATGTTTGGAACATTCCAAAGCAACGAATTGT
GCAGAAGCTAACTGGATTTAAGCAGACAAGATATGTAATTCGTGCATGCT
TCGGGGGACACAATCAGATGCTTGTTCTTTGTGGTTCTGAAGATGAACTC
GTCTACATATGGGAGCGGCGAAGTGGAAAACTAATTGCGAAACTGCGGGG
CCACGAAGGAACAGTGAATACGATTGCCTGCAACGAGAGCAATCAGAATT
TGTTCGCATCAGGCTCTGATGACAAGACTGTCATTATATGGGGGCCTGCC
AACGGATCGAAGTAG
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protein sequence of Ggra8868.t1

>Ggra8868.t1 ID=Ggra8868.t1|Name=Ggra8868.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=555bp
MNGVNISGNGVHPDVDLLEDTNSSDAPMEPNLTERGLDRHELVRIIVQAI
DALGYSSSARVLEKEADVEAMTQQMRTLRDCVLEGKWEHLEQVLGQVTVF
KSDDDARAARFVLYEQKFLELLEAGHTADALECLRNDLTRVSPDPKLLHK
LPLLCMCTTADEVRDRAEWPGAGPESRTAVLDKLQRYIPASELLQENRLE
NLLWQAIEQQKRDTMFPYTRQSRVSLLEDMVHCEERVPRKILHRLEGHTD
EVWFVQFSHGGEYLASSSKDAVVVVWRSRALLEGKCNKSNSILHKLRGHS
QMVCFLSWSPDDQFLLSTGDDQTIRLWNIKSGECCHVFEKHTGAVTSCAW
MPNGKTFVSGAHDQRMLEWDVESGEVIATYNVPNRVNDLTISSNGKLLVA
TCSDNTIIVFDTGKKQQLSMMNENYSITSLFLSADSQSLLVSINSHEDPE
AIDPEIHVWNIPKQRIVQKLTGFKQTRYVIRACFGGHNQMLVLCGSEDEL
VYIWERRSGKLIAKLRGHEGTVNTIACNESNQNLFASGSDDKTVIIWGPA
NGSK*
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mRNA from alignment at tig00000860_pilon:580381..582183+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8868.t1 ID=Ggra8868.t1|Name=Ggra8868.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1803bp|location=Sequence derived from alignment at tig00000860_pilon:580381..582183+ (Gracilaria gracilis GNS1m male)
ATGAACGGGGTTAATATATCTGGAAATGGCGTCCATCCTGACGTTGACCT
CCTAGAGGACACAAACTCTTCCGATGCACCTATGGAACCCAATCTTACAG
AACGAGGTTTGGACCGCCATGAGCTCGTTCGAATAATCGTTCAGGCGATC
GATGCTTTGGGTTACAGCTCTTCTGCTCGCGTACTTGAGAAGGAAGCCGA
CGTAGAGGCTATGACACAACAGATGCGAACGTTGCGGGATTGCGTCCTTG
AGGGGAAATGGGAACATTTGGAGCAAGTTCTTGGGCAAGTAACAGTGTTC
AAGTCAGATGATGACGCTCGTGCTGCACGTTTTGTTCTTTACGAACAAAA
GTTTCTCGAGTTGCTTGAGGCTGGACATACAGCAGATGCCTTGGAGTGTT
TGAGAAACGATCTGACTCGCGTAAGCCCAGACCCAAAGCTGCTTCACAAG
CTTCCTCTGCTCTGCATGTGCACAACAGCAGATGAAGTACGGGACCGCGC
AGAGTGGCCGGGTGCCGGCCCGGAGTCGCGCACAGCCGTTCTAGATAAGC
TTCAGCGGTATATTCCTGCAAGCGAACTGTTGCAAGAGAACCGACTGGAG
AACTTACTATGGCAAGCGATTGAACAGCAAAAGCGTGACACAATGTTCCC
ATACACAAGACAGAGCCGTGTAAGCTTGTTAGAAGATATGGTGCACTGCG
AGGAACGTGTTCCGCGAAAGATATTGCATCGTCTGGAGGGCCATACAGAT
GAAGTATGGTTCGTGCAGTTTTCCCACGGGGGTGAGTATCTTGCATCCTC
GTCGAAGGATGCCGTAGTGGTTGTTTGGAGAAGCCGAGCGCTCTTAGAAG
GCAAGTGTAACAAGAGTAATTCAATTCTACATAAGTTGAGGGGCCATTCG
CAGATGGTTTGCTTCTTGAGTTGGTCTCCAGATGATCAATTTCTTCTCAG
CACTGGTGACGACCAGACTATTCGTTTGTGGAACATAAAGTCAGGTGAAT
GTTGTCATGTTTTTGAAAAGCATACTGGTGCTGTCACTTCCTGTGCGTGG
ATGCCAAATGGGAAGACCTTTGTTTCAGGGGCACATGACCAAAGAATGCT
GGAGTGGGACGTTGAAAGCGGAGAAGTAATCGCAACATACAATGTGCCAA
ATCGAGTGAATGATCTTACAATATCCTCCAATGGCAAGCTGCTTGTGGCT
ACGTGCTCAGATAACACAATCATTGTTTTTGACACAGGAAAAAAGCAGCA
GCTTTCTATGATGAACGAGAACTACAGCATCACATCTCTTTTCTTATCTG
CAGATAGTCAGTCCCTTCTTGTGAGTATCAATTCTCATGAGGACCCCGAG
GCGATAGACCCAGAAATTCATGTTTGGAACATTCCAAAGCAACGAATTGT
GCAGAAGCTAACTGGATTTAAGCAGACAAGATATGTAATTCGTGCATGCT
TCGGGGGACACAATCAGATGCTTGTTCTTTGTGGTTCTGAAGATGAACTC
GTCTACATATGGGAGCGGCGAAGTGGAAAACTAATTGCGAAACTGCGGGG
CCACGAAGGAACAGTGAATACGATTGCCTGCAACGAGAGCAATCAGAATT
TGTTCGCATCAGGCTCTGATGACAAGACTGTCATTGTAAGTTTCATGCCA
TGATTCCCTTTCTTTCTTGCATGGTCCATTACACATTTTGACTCACCGTT
TTCTTCCTCATTCTGTTTGCTTGTTTGACTTTTTTCTATTGCAATGTTAA
TCCTCGCTATTGGTCATCATCAGATATGGGGGCCTGCCAACGGATCGAAG
TAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:580381..582183+

>Ggra8868.t1 ID=Ggra8868.t1|Name=Ggra8868.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1665bp|location=Sequence derived from alignment at tig00000860_pilon:580381..582183+ (Gracilaria gracilis GNS1m male)
ATGAACGGGGTTAATATATCTGGAAATGGCGTCCATCCTGACGTTGACCT
CCTAGAGGACACAAACTCTTCCGATGCACCTATGGAACCCAATCTTACAG
AACGAGGTTTGGACCGCCATGAGCTCGTTCGAATAATCGTTCAGGCGATC
GATGCTTTGGGTTACAGCTCTTCTGCTCGCGTACTTGAGAAGGAAGCCGA
CGTAGAGGCTATGACACAACAGATGCGAACGTTGCGGGATTGCGTCCTTG
AGGGGAAATGGGAACATTTGGAGCAAGTTCTTGGGCAAGTAACAGTGTTC
AAGTCAGATGATGACGCTCGTGCTGCACGTTTTGTTCTTTACGAACAAAA
GTTTCTCGAGTTGCTTGAGGCTGGACATACAGCAGATGCCTTGGAGTGTT
TGAGAAACGATCTGACTCGCGTAAGCCCAGACCCAAAGCTGCTTCACAAG
CTTCCTCTGCTCTGCATGTGCACAACAGCAGATGAAGTACGGGACCGCGC
AGAGTGGCCGGGTGCCGGCCCGGAGTCGCGCACAGCCGTTCTAGATAAGC
TTCAGCGGTATATTCCTGCAAGCGAACTGTTGCAAGAGAACCGACTGGAG
AACTTACTATGGCAAGCGATTGAACAGCAAAAGCGTGACACAATGTTCCC
ATACACAAGACAGAGCCGTGTAAGCTTGTTAGAAGATATGGTGCACTGCG
AGGAACGTGTTCCGCGAAAGATATTGCATCGTCTGGAGGGCCATACAGAT
GAAGTATGGTTCGTGCAGTTTTCCCACGGGGGTGAGTATCTTGCATCCTC
GTCGAAGGATGCCGTAGTGGTTGTTTGGAGAAGCCGAGCGCTCTTAGAAG
GCAAGTGTAACAAGAGTAATTCAATTCTACATAAGTTGAGGGGCCATTCG
CAGATGGTTTGCTTCTTGAGTTGGTCTCCAGATGATCAATTTCTTCTCAG
CACTGGTGACGACCAGACTATTCGTTTGTGGAACATAAAGTCAGGTGAAT
GTTGTCATGTTTTTGAAAAGCATACTGGTGCTGTCACTTCCTGTGCGTGG
ATGCCAAATGGGAAGACCTTTGTTTCAGGGGCACATGACCAAAGAATGCT
GGAGTGGGACGTTGAAAGCGGAGAAGTAATCGCAACATACAATGTGCCAA
ATCGAGTGAATGATCTTACAATATCCTCCAATGGCAAGCTGCTTGTGGCT
ACGTGCTCAGATAACACAATCATTGTTTTTGACACAGGAAAAAAGCAGCA
GCTTTCTATGATGAACGAGAACTACAGCATCACATCTCTTTTCTTATCTG
CAGATAGTCAGTCCCTTCTTGTGAGTATCAATTCTCATGAGGACCCCGAG
GCGATAGACCCAGAAATTCATGTTTGGAACATTCCAAAGCAACGAATTGT
GCAGAAGCTAACTGGATTTAAGCAGACAAGATATGTAATTCGTGCATGCT
TCGGGGGACACAATCAGATGCTTGTTCTTTGTGGTTCTGAAGATGAACTC
GTCTACATATGGGAGCGGCGAAGTGGAAAACTAATTGCGAAACTGCGGGG
CCACGAAGGAACAGTGAATACGATTGCCTGCAACGAGAGCAATCAGAATT
TGTTCGCATCAGGCTCTGATGACAAGACTGTCATTATATGGGGGCCTGCC
AACGGATCGAAGTAG
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