Ggra8867.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8867.t1
Unique Name	Ggra8867.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	511

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:577978..579510 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8867	Ggra8867	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 577978..579510 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8867.t1.start1	Ggra8867.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 577978..577980 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8867.t1.CDS1	Ggra8867.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 577978..579510 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8867.t1.exon1	Ggra8867.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 577978..579510 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8867.t1.stop1	Ggra8867.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 579508..579510 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8867.t1	Ggra8867.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 577978..579510 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:577978..579510+
coding sequence from alignment at tig00000860_pilon:577978..579510+

mRNA sequence

>Ggra8867.t1 ID=Ggra8867.t1|Name=Ggra8867.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=511bp
MDLNVEAANHHFQTSPKKNPQPLTGRTSYRWSNFSEKPIGSNLSVADITG
SRSTIASFRPDAPGYYSLNLAVKGHGVTYSDPINIFVYDLDDLQQVTAAQ
SLAASVEQQYYVIGCHFAKPAVEPNDTSHSPSKRKMDIANLSSSSAIPTR
GASSQPSTASANPSIGGNLFRPPWKRTKLSAADSNSNNGHELPAAAHPRT
MALASGKPSITPADYDDNDDEDDDNAHDDDDDDDDAVIGGGGGYEDDDDE
DLEGLESGDDDDDEHLGEGGGDDADDGANDDGDQGGDDDDEGGDDDEGGD
DDGNQGEEQEDEEGSDDDENQEEIEIDEEEEDISSDVDIDGAEEAEPTHT
SQQREEPEEEDADEMRRDVQEEEEEEDEEEDTGMYDDGDDPQQDEDVDDD
EEDDAEDDDEGGGGDEDGEEEIEVDDDQEEPKNITQEDDDDDDDDDDDED
DDDDDDDDDDEMMEEQEVQDAFPSGGIEQERDGDNQEDDNVGENVEFEDV
EIENDDDGDE*

spliced messenger RNA

>Ggra8867.t1 ID=Ggra8867.t1|Name=Ggra8867.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1533bp|location=Sequence derived from alignment at tig00000860_pilon:577978..579510+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCTCAACGTGGAAGCCGCTAATCATCACTTCCAGACGTCACCCAA
GAAGAATCCGCAGCCGCTCACGGGTCGCACCTCTTATCGTTGGTCCAACT
TCTCCGAGAAACCAATCGGATCAAATCTATCTGTCGCTGATATCACTGGG
AGTCGTTCCACCATAGCGTCCTTCCGTCCGGATGCCCCTGGTTACTATAG
TCTAAATCTGGCAGTCAAGGGTCACGGCGTCACCTACTCCGATCCCATCA
ACATTTTTGTGTACGACCTCGACGATCTCCAACAGGTAACTGCTGCTCAA
TCTCTCGCCGCATCGGTTGAGCAGCAGTATTACGTCATTGGTTGTCACTT
TGCAAAGCCCGCTGTAGAGCCCAATGACACATCACACTCCCCATCAAAGA
GAAAGATGGACATTGCAAACCTATCATCAAGCTCCGCAATCCCGACACGT
GGCGCATCAAGTCAACCCTCCACCGCATCTGCTAACCCCTCCATCGGCGG
CAATTTGTTTCGCCCACCTTGGAAACGAACAAAACTCTCTGCCGCCGACT
CTAACTCCAACAATGGCCATGAGCTGCCTGCCGCTGCTCACCCGCGCACT
ATGGCACTCGCATCTGGCAAACCATCGATAACACCTGCTgattatgatga
taacgatgacgaagacgacgacaacgcgcatgacgacgacgacgacgatg
atgacgctgttattggcggcggcggcggatacgaggatgacgacgacgaa
gacttagaaggactggaaagtggcgatgacgatgatgacgaacatctggg
tgaaggtggcggcgatgacgctgatgatggtgcgaatgatgacggtgatc
agggtggcgatgatgatgacgaaggaggcgatgatgatgaaggaggcgat
gacgatggtaatcagggcgaagaacaagaagacgaggaaggaagcgacga
tgacgaaaaccaggaagaaaTCGAGATTGACGAGGAGGAGGAAGATATCT
CTTCTGACGTTGATATTGATGGTGCCgaagaggcagagcccacccatacg
tctcagcaaagggaagagcctgaagaagaggacgcggatgagatgagaag
ggatgttcaagaagaagaagaagaagaggatgaggaggaggatactggta
tgtatgatgatggtgacgaTCCgcagcaggatgaggatgtcgacgatgat
gaagaagatgatgctgaagacgatgacgaaggcggtggaggtgatgaaga
tggcgaggaagagatagaggtcgacgatgaccaagaagaaccgaagaata
ttacacaggaagacgacgatgacgacgacgacgatgatgatgatgaagat
gacgacgacgacgatgatgatgatgatgatgaAATGATGGAGGAGCAAGA
AGTCCAAGACGCGTTCCCATCTGGTGGTATCGAACAAGAGCGAGATGGCG
ATAATCAAGAGGATGACAACGTTGGTGAGAATGTAGAGTTTGAGGATGTA
GAGATAGAGAACGACGACGACGGAGATGAATGA

protein sequence of Ggra8867.t1

>Ggra8867.t1 ID=Ggra8867.t1|Name=Ggra8867.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=511bp
MDLNVEAANHHFQTSPKKNPQPLTGRTSYRWSNFSEKPIGSNLSVADITG
SRSTIASFRPDAPGYYSLNLAVKGHGVTYSDPINIFVYDLDDLQQVTAAQ
SLAASVEQQYYVIGCHFAKPAVEPNDTSHSPSKRKMDIANLSSSSAIPTR
GASSQPSTASANPSIGGNLFRPPWKRTKLSAADSNSNNGHELPAAAHPRT
MALASGKPSITPADYDDNDDEDDDNAHDDDDDDDDAVIGGGGGYEDDDDE
DLEGLESGDDDDDEHLGEGGGDDADDGANDDGDQGGDDDDEGGDDDEGGD
DDGNQGEEQEDEEGSDDDENQEEIEIDEEEEDISSDVDIDGAEEAEPTHT
SQQREEPEEEDADEMRRDVQEEEEEEDEEEDTGMYDDGDDPQQDEDVDDD
EEDDAEDDDEGGGGDEDGEEEIEVDDDQEEPKNITQEDDDDDDDDDDDED
DDDDDDDDDDEMMEEQEVQDAFPSGGIEQERDGDNQEDDNVGENVEFEDV
EIENDDDGDE*

mRNA from alignment at tig00000860_pilon:577978..579510+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8867.t1 ID=Ggra8867.t1|Name=Ggra8867.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1533bp|location=Sequence derived from alignment at tig00000860_pilon:577978..579510+ (Gracilaria gracilis GNS1m male)
ATGGATCTCAACGTGGAAGCCGCTAATCATCACTTCCAGACGTCACCCAA
GAAGAATCCGCAGCCGCTCACGGGTCGCACCTCTTATCGTTGGTCCAACT
TCTCCGAGAAACCAATCGGATCAAATCTATCTGTCGCTGATATCACTGGG
AGTCGTTCCACCATAGCGTCCTTCCGTCCGGATGCCCCTGGTTACTATAG
TCTAAATCTGGCAGTCAAGGGTCACGGCGTCACCTACTCCGATCCCATCA
ACATTTTTGTGTACGACCTCGACGATCTCCAACAGGTAACTGCTGCTCAA
TCTCTCGCCGCATCGGTTGAGCAGCAGTATTACGTCATTGGTTGTCACTT
TGCAAAGCCCGCTGTAGAGCCCAATGACACATCACACTCCCCATCAAAGA
GAAAGATGGACATTGCAAACCTATCATCAAGCTCCGCAATCCCGACACGT
GGCGCATCAAGTCAACCCTCCACCGCATCTGCTAACCCCTCCATCGGCGG
CAATTTGTTTCGCCCACCTTGGAAACGAACAAAACTCTCTGCCGCCGACT
CTAACTCCAACAATGGCCATGAGCTGCCTGCCGCTGCTCACCCGCGCACT
ATGGCACTCGCATCTGGCAAACCATCGATAACACCTGCTgattatgatga
taacgatgacgaagacgacgacaacgcgcatgacgacgacgacgacgatg
atgacgctgttattggcggcggcggcggatacgaggatgacgacgacgaa
gacttagaaggactggaaagtggcgatgacgatgatgacgaacatctggg
tgaaggtggcggcgatgacgctgatgatggtgcgaatgatgacggtgatc
agggtggcgatgatgatgacgaaggaggcgatgatgatgaaggaggcgat
gacgatggtaatcagggcgaagaacaagaagacgaggaaggaagcgacga
tgacgaaaaccaggaagaaaTCGAGATTGACGAGGAGGAGGAAGATATCT
CTTCTGACGTTGATATTGATGGTGCCgaagaggcagagcccacccatacg
tctcagcaaagggaagagcctgaagaagaggacgcggatgagatgagaag
ggatgttcaagaagaagaagaagaagaggatgaggaggaggatactggta
tgtatgatgatggtgacgaTCCgcagcaggatgaggatgtcgacgatgat
gaagaagatgatgctgaagacgatgacgaaggcggtggaggtgatgaaga
tggcgaggaagagatagaggtcgacgatgaccaagaagaaccgaagaata
ttacacaggaagacgacgatgacgacgacgacgatgatgatgatgaagat
gacgacgacgacgatgatgatgatgatgatgaAATGATGGAGGAGCAAGA
AGTCCAAGACGCGTTCCCATCTGGTGGTATCGAACAAGAGCGAGATGGCG
ATAATCAAGAGGATGACAACGTTGGTGAGAATGTAGAGTTTGAGGATGTA
GAGATAGAGAACGACGACGACGGAGATGAATGA

Coding sequence (CDS) from alignment at tig00000860_pilon:577978..579510+

>Ggra8867.t1 ID=Ggra8867.t1|Name=Ggra8867.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1533bp|location=Sequence derived from alignment at tig00000860_pilon:577978..579510+ (Gracilaria gracilis GNS1m male)
ATGGATCTCAACGTGGAAGCCGCTAATCATCACTTCCAGACGTCACCCAA
GAAGAATCCGCAGCCGCTCACGGGTCGCACCTCTTATCGTTGGTCCAACT
TCTCCGAGAAACCAATCGGATCAAATCTATCTGTCGCTGATATCACTGGG
AGTCGTTCCACCATAGCGTCCTTCCGTCCGGATGCCCCTGGTTACTATAG
TCTAAATCTGGCAGTCAAGGGTCACGGCGTCACCTACTCCGATCCCATCA
ACATTTTTGTGTACGACCTCGACGATCTCCAACAGGTAACTGCTGCTCAA
TCTCTCGCCGCATCGGTTGAGCAGCAGTATTACGTCATTGGTTGTCACTT
TGCAAAGCCCGCTGTAGAGCCCAATGACACATCACACTCCCCATCAAAGA
GAAAGATGGACATTGCAAACCTATCATCAAGCTCCGCAATCCCGACACGT
GGCGCATCAAGTCAACCCTCCACCGCATCTGCTAACCCCTCCATCGGCGG
CAATTTGTTTCGCCCACCTTGGAAACGAACAAAACTCTCTGCCGCCGACT
CTAACTCCAACAATGGCCATGAGCTGCCTGCCGCTGCTCACCCGCGCACT
ATGGCACTCGCATCTGGCAAACCATCGATAACACCTGCTgattatgatga
taacgatgacgaagacgacgacaacgcgcatgacgacgacgacgacgatg
atgacgctgttattggcggcggcggcggatacgaggatgacgacgacgaa
gacttagaaggactggaaagtggcgatgacgatgatgacgaacatctggg
tgaaggtggcggcgatgacgctgatgatggtgcgaatgatgacggtgatc
agggtggcgatgatgatgacgaaggaggcgatgatgatgaaggaggcgat
gacgatggtaatcagggcgaagaacaagaagacgaggaaggaagcgacga
tgacgaaaaccaggaagaaaTCGAGATTGACGAGGAGGAGGAAGATATCT
CTTCTGACGTTGATATTGATGGTGCCgaagaggcagagcccacccatacg
tctcagcaaagggaagagcctgaagaagaggacgcggatgagatgagaag
ggatgttcaagaagaagaagaagaagaggatgaggaggaggatactggta
tgtatgatgatggtgacgaTCCgcagcaggatgaggatgtcgacgatgat
gaagaagatgatgctgaagacgatgacgaaggcggtggaggtgatgaaga
tggcgaggaagagatagaggtcgacgatgaccaagaagaaccgaagaata
ttacacaggaagacgacgatgacgacgacgacgatgatgatgatgaagat
gacgacgacgacgatgatgatgatgatgatgaAATGATGGAGGAGCAAGA
AGTCCAAGACGCGTTCCCATCTGGTGGTATCGAACAAGAGCGAGATGGCG
ATAATCAAGAGGATGACAACGTTGGTGAGAATGTAGAGTTTGAGGATGTA
GAGATAGAGAACGACGACGACGGAGATGAATGA