Ggra8863.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8863.t1
Unique NameGgra8863.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length329
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:566593..567579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4537.OPUNC12G16300.1
PFAMsPhos_pyr_kin
Max annot lvl35493|Streptophyta
KEGG rclassRC00002,RC00017
KEGG koko:K00868
KEGG ReactionR00174,R01909,R02493
KEGG Pathwayko00750,ko01100,map00750,map01100
Evalue1.61e-69
EggNOG OGsCOG2240@1|root,KOG2599@2759|Eukaryota,37NXM@33090|Viridiplantae,3GFRA@35493|Streptophyta,3KQ1S@4447|Liliopsida,3I2AX@38820|Poales
EC2.7.1.35
DescriptionPhosphomethylpyrimidine kinase
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8863Ggra8863Gracilaria gracilis GNS1m malegenetig00000860_pilon 566593..567579 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8863.t1.start1Ggra8863.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 566593..566595 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8863.t1.CDS1Ggra8863.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 566593..567579 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8863.t1.exon1Ggra8863.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 566593..567579 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8863.t1.stop1Ggra8863.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 567577..567579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8863.t1Ggra8863.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 566593..567579 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8863.t1 ID=Ggra8863.t1|Name=Ggra8863.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=329bp
MAAAATATATATAATAAAAAAAAALARRVLSVQSHVTSGYVGNRAAAFPL
QLLGYDVDILNSCQLSNHTGYAHGAPGIRLDAADLRTLLHALRDNGLLSA
TSHLLTGFIATPGCLLAVADAVALLRAHMSPPQQLVYVCDPVLGDNGKLY
VPEQLVDIYKRYILRFATVLTPNAFELSLLTNTTITNEHDTFAACNLLHN
RYQIPTVVVTGTMFDRRSSTVSVLVSRHTPQSHMRFAIDTPYIDGHFTGT
GDLMTALLLAWSDRFPDDPVRACSSATASVSAVLANTAKMPKRQGHCPFP
ELRLVQSQQYILDPPLSLVSVRHISMPQ*
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spliced messenger RNA

>Ggra8863.t1 ID=Ggra8863.t1|Name=Ggra8863.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=987bp|location=Sequence derived from alignment at tig00000860_pilon:566593..567579+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggctgccgccgccaccgccaccgccaccgccaccgccgccaccgccgc
cgccgccgccgccgccgcagcgctcgcgcgccgcgtgctgtccgtgcagA
GCCACGTCACGTCAGGGTACGTCGGAAACCGCGCCGCCGCCTTCCCGCTG
CAGCTGCTGGGCTACGACGTGGACATCCTCAACTCGTGCCAGCTGTCCAA
CCACACGGGCTACGCGCACGGCGCGCCGGGCATCCGCCTCGACGCCGCCG
ACCTGCGCACGCTGCTGCACGCGCTCCGCGACAACGGGCTGCTGAGCGCG
ACGTCGCACCTGCTCACCGGCTTCATCGCCACGCCCGGCTGTCTGCTGGC
CGTCGCCGACGCCGTGGCGCTGCTGCGCGCGCACATGTCGCCGCCGCAGC
AACTGGTGTACGTGTGCGATCCAGTGCTGGGCGATAACGGCAAGCTGTAC
GTGCCCGAGCAGCTTGTCGATATTTACAAGCGTTACATCCTTCGATTCGC
AACCGTTCTCACCCCCAACGCCTTCGAACTGTCGCTGCTCACCAATACCA
CCATCACCAATGAGCACGATACCTTTGCCGCGTGCAACTTGCTGCACAAC
CGTTATCAGATACCCACCGTCGTCGTCACGGGTACCATGTTTGACCGCCG
CTCCAGCACCGTATCAGTGCTCGTGTCGCGCCACACGCCGCAATCGCACA
TGCGCTTCGCCATCGACACGCCGTATATTGATGGCCACTTCACCGGCACA
GGTGATCTCATGACAGCTTTATTGCTAGCCTGGTCCGACAGGTTTCCAGA
CGACCCCGTGCGCGCTTGTTCCAGCGCCACTGCTTCCGTTTCGGCTGTGT
TGGCAAACACCGCCAAGATGCCAAAGCGACAGGGTCACTGTCCGTTCCCG
GAGCTGCGTCTCGTGCAGAGCCAACAATACATTCTCGATCCGCCGCTCAG
TTTGGTTTCTGTGCGACACATATCCATGCCACAATGA
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protein sequence of Ggra8863.t1

>Ggra8863.t1 ID=Ggra8863.t1|Name=Ggra8863.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=329bp
MAAAATATATATAATAAAAAAAAALARRVLSVQSHVTSGYVGNRAAAFPL
QLLGYDVDILNSCQLSNHTGYAHGAPGIRLDAADLRTLLHALRDNGLLSA
TSHLLTGFIATPGCLLAVADAVALLRAHMSPPQQLVYVCDPVLGDNGKLY
VPEQLVDIYKRYILRFATVLTPNAFELSLLTNTTITNEHDTFAACNLLHN
RYQIPTVVVTGTMFDRRSSTVSVLVSRHTPQSHMRFAIDTPYIDGHFTGT
GDLMTALLLAWSDRFPDDPVRACSSATASVSAVLANTAKMPKRQGHCPFP
ELRLVQSQQYILDPPLSLVSVRHISMPQ*
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mRNA from alignment at tig00000860_pilon:566593..567579+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8863.t1 ID=Ggra8863.t1|Name=Ggra8863.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=987bp|location=Sequence derived from alignment at tig00000860_pilon:566593..567579+ (Gracilaria gracilis GNS1m male)
atggctgccgccgccaccgccaccgccaccgccaccgccgccaccgccgc
cgccgccgccgccgccgcagcgctcgcgcgccgcgtgctgtccgtgcagA
GCCACGTCACGTCAGGGTACGTCGGAAACCGCGCCGCCGCCTTCCCGCTG
CAGCTGCTGGGCTACGACGTGGACATCCTCAACTCGTGCCAGCTGTCCAA
CCACACGGGCTACGCGCACGGCGCGCCGGGCATCCGCCTCGACGCCGCCG
ACCTGCGCACGCTGCTGCACGCGCTCCGCGACAACGGGCTGCTGAGCGCG
ACGTCGCACCTGCTCACCGGCTTCATCGCCACGCCCGGCTGTCTGCTGGC
CGTCGCCGACGCCGTGGCGCTGCTGCGCGCGCACATGTCGCCGCCGCAGC
AACTGGTGTACGTGTGCGATCCAGTGCTGGGCGATAACGGCAAGCTGTAC
GTGCCCGAGCAGCTTGTCGATATTTACAAGCGTTACATCCTTCGATTCGC
AACCGTTCTCACCCCCAACGCCTTCGAACTGTCGCTGCTCACCAATACCA
CCATCACCAATGAGCACGATACCTTTGCCGCGTGCAACTTGCTGCACAAC
CGTTATCAGATACCCACCGTCGTCGTCACGGGTACCATGTTTGACCGCCG
CTCCAGCACCGTATCAGTGCTCGTGTCGCGCCACACGCCGCAATCGCACA
TGCGCTTCGCCATCGACACGCCGTATATTGATGGCCACTTCACCGGCACA
GGTGATCTCATGACAGCTTTATTGCTAGCCTGGTCCGACAGGTTTCCAGA
CGACCCCGTGCGCGCTTGTTCCAGCGCCACTGCTTCCGTTTCGGCTGTGT
TGGCAAACACCGCCAAGATGCCAAAGCGACAGGGTCACTGTCCGTTCCCG
GAGCTGCGTCTCGTGCAGAGCCAACAATACATTCTCGATCCGCCGCTCAG
TTTGGTTTCTGTGCGACACATATCCATGCCACAATGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:566593..567579+

>Ggra8863.t1 ID=Ggra8863.t1|Name=Ggra8863.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=987bp|location=Sequence derived from alignment at tig00000860_pilon:566593..567579+ (Gracilaria gracilis GNS1m male)
atggctgccgccgccaccgccaccgccaccgccaccgccgccaccgccgc
cgccgccgccgccgccgcagcgctcgcgcgccgcgtgctgtccgtgcagA
GCCACGTCACGTCAGGGTACGTCGGAAACCGCGCCGCCGCCTTCCCGCTG
CAGCTGCTGGGCTACGACGTGGACATCCTCAACTCGTGCCAGCTGTCCAA
CCACACGGGCTACGCGCACGGCGCGCCGGGCATCCGCCTCGACGCCGCCG
ACCTGCGCACGCTGCTGCACGCGCTCCGCGACAACGGGCTGCTGAGCGCG
ACGTCGCACCTGCTCACCGGCTTCATCGCCACGCCCGGCTGTCTGCTGGC
CGTCGCCGACGCCGTGGCGCTGCTGCGCGCGCACATGTCGCCGCCGCAGC
AACTGGTGTACGTGTGCGATCCAGTGCTGGGCGATAACGGCAAGCTGTAC
GTGCCCGAGCAGCTTGTCGATATTTACAAGCGTTACATCCTTCGATTCGC
AACCGTTCTCACCCCCAACGCCTTCGAACTGTCGCTGCTCACCAATACCA
CCATCACCAATGAGCACGATACCTTTGCCGCGTGCAACTTGCTGCACAAC
CGTTATCAGATACCCACCGTCGTCGTCACGGGTACCATGTTTGACCGCCG
CTCCAGCACCGTATCAGTGCTCGTGTCGCGCCACACGCCGCAATCGCACA
TGCGCTTCGCCATCGACACGCCGTATATTGATGGCCACTTCACCGGCACA
GGTGATCTCATGACAGCTTTATTGCTAGCCTGGTCCGACAGGTTTCCAGA
CGACCCCGTGCGCGCTTGTTCCAGCGCCACTGCTTCCGTTTCGGCTGTGT
TGGCAAACACCGCCAAGATGCCAAAGCGACAGGGTCACTGTCCGTTCCCG
GAGCTGCGTCTCGTGCAGAGCCAACAATACATTCTCGATCCGCCGCTCAG
TTTGGTTTCTGTGCGACACATATCCATGCCACAATGA
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