Ggra8861.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8861.t1
Unique Name	Ggra8861.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	352

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:553637..554692 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1123228.AUIH01000017_gene3648
PFAMs	3HCDH_N
Max annot lvl	135619\|Oceanospirillales
Evalue	2.98e-67
EggNOG OGs	COG1063@1\|root,COG1063@2\|Bacteria,1MW7C@1224\|Proteobacteria,1RYJU@1236\|Gammaproteobacteria,1XIVY@135619\|Oceanospirillales
Description	COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8861	Ggra8861	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 553637..554692 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8861.t1.start1	Ggra8861.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 553637..553639 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8861.t1.CDS1	Ggra8861.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 553637..554692 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8861.t1.exon1	Ggra8861.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 553637..554692 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8861.t1.stop1	Ggra8861.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 554690..554692 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8861.t1	Ggra8861.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 553637..554692 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:553637..554692+
coding sequence from alignment at tig00000860_pilon:553637..554692+

mRNA sequence

>Ggra8861.t1 ID=Ggra8861.t1|Name=Ggra8861.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=352bp
MSNEERTLVRFVQFDGPKQVSVQSEELAECEMDQVQVRTKYSAVSTGTEM
LLYNGLMPTDIAVDEVFESRQERLSYPCRYGYAAVGSVVRSRDAAVPSGS
RVFAFREHSSHFCEKASNVELVPHDVDALDACFFPTVETAVSIAFDAKLL
PGESVTIVGQGVVGLVLTAVFKHVQPYSNVVTVDTKETRRQVSVERAGAD
YSLDAHEANGAGMRALFPSGTDVSVDVSGCGEGLQTAICCTRKHGRVVIG
SWYGRKCVVLPQLGGRFHRSHIELVASQVSTIPAALSGRWSKRRRFDLVW
RLLRDIRPSQWVPLRTVDVGRAGAAYEQLAGGEQLQVVLCYEQSTNGRNA
T*

spliced messenger RNA

>Ggra8861.t1 ID=Ggra8861.t1|Name=Ggra8861.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00000860_pilon:553637..554692+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTAATGAAGAGCGAACGTTGGTGCGCTTTGTGCAGTTTGACGGTCC
CAAGCAAGTGTCGGTGCAAAGCGAGGAGCTAGCGGAATGTGAGATGGATC
AAGTGCAAGTGCGCACAAAGTATTCTGCGGTGTCTACGGGCACGGAAATG
CTGTTGTACAACGGGTTGATGCCGACGGACATTGCAGTGGACGAGGTGTT
CGAGTCACGACAAGAGCGTTTGTCATACCCATGTCGTTATGGATACGCGG
CGGTGGGCAGCGTGGTTCGATCGCGCGATGCAGCAGTGCCAAGCGGAAGT
CGGGTGTTTGCGTTCCGCGAGCACAGCTCTCACTTTTGCGAGAAGGCGAG
CAACGTTGAGCTGGTTCCACACGATGTGGATGCGCTCGACGCGTGCTTCT
TTCCAACGGTGGAGACGGCGGTGAGTATAGCGTTTGACGCAAAGTTGTTG
CCGGGAGAGTCGGTAACAATCGTTGGACAAGGTGTTGTGGGATTGGTATT
GACGGCTGTATTCAAGCACGTTCAGCCATACAGCAACGTGGTGACGGTTG
ACACGAAGGAGACACGGCGCCAAGTGTCGGTGGAACGGGCGGGCGCAGAT
TACTCGTTGGACGCACACGAGGCGAACGGAGCGGGTATGAGAGCGCTGTT
TCCGAGCGGCACGGACGTGAGCGTGGACGTGTCGGGGTGCGGCGAGGGGC
TACAGACGGCGATCTGCTGCACGCGGAAGCACGGACGGGTGGTGATTGGC
TCGTGGTACGGGCGCAAGTGTGTGGTACTACCACAGCTGGGTGGGCGTTT
CCATCGCAGCCATATTGAACTTGTGGCGTCGCAGGTGAGCACCATTCCAG
CGGCGCTGTCGGGAAGGTGGAGCAAGCGCCGGCGCTTTGATCTGGTGTGG
CGGCTGCTGAGAGACATTCGGCCGTCGCAGTGGGTGCCGCTGCGCACGGT
GGACGTGGGGCGCGCCGGCGCGGCGTACGAGCAGCTGGCTGGCGGAGAAC
AGCTACAAGTGGTGCTCTGCTATGAGCAATCTACCAACGGTAGGAACGCT
ACCTAA

protein sequence of Ggra8861.t1

>Ggra8861.t1 ID=Ggra8861.t1|Name=Ggra8861.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=352bp
MSNEERTLVRFVQFDGPKQVSVQSEELAECEMDQVQVRTKYSAVSTGTEM
LLYNGLMPTDIAVDEVFESRQERLSYPCRYGYAAVGSVVRSRDAAVPSGS
RVFAFREHSSHFCEKASNVELVPHDVDALDACFFPTVETAVSIAFDAKLL
PGESVTIVGQGVVGLVLTAVFKHVQPYSNVVTVDTKETRRQVSVERAGAD
YSLDAHEANGAGMRALFPSGTDVSVDVSGCGEGLQTAICCTRKHGRVVIG
SWYGRKCVVLPQLGGRFHRSHIELVASQVSTIPAALSGRWSKRRRFDLVW
RLLRDIRPSQWVPLRTVDVGRAGAAYEQLAGGEQLQVVLCYEQSTNGRNA
T*

mRNA from alignment at tig00000860_pilon:553637..554692+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8861.t1 ID=Ggra8861.t1|Name=Ggra8861.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00000860_pilon:553637..554692+ (Gracilaria gracilis GNS1m male)
ATGAGTAATGAAGAGCGAACGTTGGTGCGCTTTGTGCAGTTTGACGGTCC
CAAGCAAGTGTCGGTGCAAAGCGAGGAGCTAGCGGAATGTGAGATGGATC
AAGTGCAAGTGCGCACAAAGTATTCTGCGGTGTCTACGGGCACGGAAATG
CTGTTGTACAACGGGTTGATGCCGACGGACATTGCAGTGGACGAGGTGTT
CGAGTCACGACAAGAGCGTTTGTCATACCCATGTCGTTATGGATACGCGG
CGGTGGGCAGCGTGGTTCGATCGCGCGATGCAGCAGTGCCAAGCGGAAGT
CGGGTGTTTGCGTTCCGCGAGCACAGCTCTCACTTTTGCGAGAAGGCGAG
CAACGTTGAGCTGGTTCCACACGATGTGGATGCGCTCGACGCGTGCTTCT
TTCCAACGGTGGAGACGGCGGTGAGTATAGCGTTTGACGCAAAGTTGTTG
CCGGGAGAGTCGGTAACAATCGTTGGACAAGGTGTTGTGGGATTGGTATT
GACGGCTGTATTCAAGCACGTTCAGCCATACAGCAACGTGGTGACGGTTG
ACACGAAGGAGACACGGCGCCAAGTGTCGGTGGAACGGGCGGGCGCAGAT
TACTCGTTGGACGCACACGAGGCGAACGGAGCGGGTATGAGAGCGCTGTT
TCCGAGCGGCACGGACGTGAGCGTGGACGTGTCGGGGTGCGGCGAGGGGC
TACAGACGGCGATCTGCTGCACGCGGAAGCACGGACGGGTGGTGATTGGC
TCGTGGTACGGGCGCAAGTGTGTGGTACTACCACAGCTGGGTGGGCGTTT
CCATCGCAGCCATATTGAACTTGTGGCGTCGCAGGTGAGCACCATTCCAG
CGGCGCTGTCGGGAAGGTGGAGCAAGCGCCGGCGCTTTGATCTGGTGTGG
CGGCTGCTGAGAGACATTCGGCCGTCGCAGTGGGTGCCGCTGCGCACGGT
GGACGTGGGGCGCGCCGGCGCGGCGTACGAGCAGCTGGCTGGCGGAGAAC
AGCTACAAGTGGTGCTCTGCTATGAGCAATCTACCAACGGTAGGAACGCT
ACCTAA

Coding sequence (CDS) from alignment at tig00000860_pilon:553637..554692+

>Ggra8861.t1 ID=Ggra8861.t1|Name=Ggra8861.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1056bp|location=Sequence derived from alignment at tig00000860_pilon:553637..554692+ (Gracilaria gracilis GNS1m male)
ATGAGTAATGAAGAGCGAACGTTGGTGCGCTTTGTGCAGTTTGACGGTCC
CAAGCAAGTGTCGGTGCAAAGCGAGGAGCTAGCGGAATGTGAGATGGATC
AAGTGCAAGTGCGCACAAAGTATTCTGCGGTGTCTACGGGCACGGAAATG
CTGTTGTACAACGGGTTGATGCCGACGGACATTGCAGTGGACGAGGTGTT
CGAGTCACGACAAGAGCGTTTGTCATACCCATGTCGTTATGGATACGCGG
CGGTGGGCAGCGTGGTTCGATCGCGCGATGCAGCAGTGCCAAGCGGAAGT
CGGGTGTTTGCGTTCCGCGAGCACAGCTCTCACTTTTGCGAGAAGGCGAG
CAACGTTGAGCTGGTTCCACACGATGTGGATGCGCTCGACGCGTGCTTCT
TTCCAACGGTGGAGACGGCGGTGAGTATAGCGTTTGACGCAAAGTTGTTG
CCGGGAGAGTCGGTAACAATCGTTGGACAAGGTGTTGTGGGATTGGTATT
GACGGCTGTATTCAAGCACGTTCAGCCATACAGCAACGTGGTGACGGTTG
ACACGAAGGAGACACGGCGCCAAGTGTCGGTGGAACGGGCGGGCGCAGAT
TACTCGTTGGACGCACACGAGGCGAACGGAGCGGGTATGAGAGCGCTGTT
TCCGAGCGGCACGGACGTGAGCGTGGACGTGTCGGGGTGCGGCGAGGGGC
TACAGACGGCGATCTGCTGCACGCGGAAGCACGGACGGGTGGTGATTGGC
TCGTGGTACGGGCGCAAGTGTGTGGTACTACCACAGCTGGGTGGGCGTTT
CCATCGCAGCCATATTGAACTTGTGGCGTCGCAGGTGAGCACCATTCCAG
CGGCGCTGTCGGGAAGGTGGAGCAAGCGCCGGCGCTTTGATCTGGTGTGG
CGGCTGCTGAGAGACATTCGGCCGTCGCAGTGGGTGCCGCTGCGCACGGT
GGACGTGGGGCGCGCCGGCGCGGCGTACGAGCAGCTGGCTGGCGGAGAAC
AGCTACAAGTGGTGCTCTGCTATGAGCAATCTACCAACGGTAGGAACGCT
ACCTAA