Ggra8854.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8854.t1
Unique NameGgra8854.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length191
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:536508..537080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog985255.APHJ01000018_gene2959
PFAMsNUDIX
Max annot lvl976|Bacteroidetes
KEGG koko:K03574
Evalue2.5e-16
EggNOG OGsCOG1051@1|root,COG1051@2|Bacteria,4NSQ1@976|Bacteroidetes,1I3GH@117743|Flavobacteriia,2P6YX@244698|Gillisia
EC3.6.1.55
DescriptionNUDIX domain
COG categoryF
BRITEko00000,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8854Ggra8854Gracilaria gracilis GNS1m malegenetig00000860_pilon 536508..537080 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8854.t1.start1Ggra8854.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 536508..536510 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8854.t1.CDS1Ggra8854.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 536508..537080 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8854.t1.exon1Ggra8854.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 536508..537080 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8854.t1.stop1Ggra8854.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 537078..537080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8854.t1Ggra8854.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 536508..537080 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8854.t1 ID=Ggra8854.t1|Name=Ggra8854.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=191bp
MTISAYVLSRAIRFCTRSAKHFGENSNRFLCTTAELKPIRIAVSTALFRK
HEARIEVLLIKRGKEPRKDLWSLPGGKVEEHENLQDAALRELLEETAIDS
SHCRILPRPVDIALVPRERPLFRIYVFAGICDIDATLNAGDDAADVGFYR
TDEIVALPLVDGLESRVLKALAAILDDAKIAAEFNDSPSQ*
back to top

spliced messenger RNA

>Ggra8854.t1 ID=Ggra8854.t1|Name=Ggra8854.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=573bp|location=Sequence derived from alignment at tig00000860_pilon:536508..537080+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTATCTCGGCTTACGTTCTCTCCAGGGCAATACGGTTTTGTACTAG
ATCTGCTAAGCATTTTGGGGAGAACTCGAACAGATTCCTTTGTACCACAG
CCGAGTTAAAGCCTATACGCATAGCGGTGTCAACAGCATTGTTTCGGAAG
CACGAAGCTCGCATTGAGGTTCTTCTCATCAAGCGAGGAAAAGAGCCAAG
AAAAGACCTGTGGTCATTACCGGGGGGGAAGGTTGAAGAGCACGAAAATC
TACAAGACGCAGCACTTCGAGAACTTCTTGAAGAAACGGCGATTGATTCA
AGCCACTGTCGAATACTACCGCGTCCAGTGGATATAGCACTTGTTCCACG
TGAAAGACCTTTGTTTCGTATTTACGTGTTCGCTGGAATTTGCGACATCG
ACGCAACTCTAAATGCAGGGGATGACGCCGCTGATGTTGGATTCTATCGA
ACGGATGAAATCGTTGCTCTACCATTAGTGGACGGTCTTGAAAGCAGAGT
GCTCAAGGCACTGGCAGCCATCCTGGATGATGCGAAGATTGCTGCCGAGT
TTAACGACTCGCCTTCGCAATAA
back to top

protein sequence of Ggra8854.t1

>Ggra8854.t1 ID=Ggra8854.t1|Name=Ggra8854.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=191bp
MTISAYVLSRAIRFCTRSAKHFGENSNRFLCTTAELKPIRIAVSTALFRK
HEARIEVLLIKRGKEPRKDLWSLPGGKVEEHENLQDAALRELLEETAIDS
SHCRILPRPVDIALVPRERPLFRIYVFAGICDIDATLNAGDDAADVGFYR
TDEIVALPLVDGLESRVLKALAAILDDAKIAAEFNDSPSQ*
back to top

mRNA from alignment at tig00000860_pilon:536508..537080+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8854.t1 ID=Ggra8854.t1|Name=Ggra8854.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=573bp|location=Sequence derived from alignment at tig00000860_pilon:536508..537080+ (Gracilaria gracilis GNS1m male)
ATGACTATCTCGGCTTACGTTCTCTCCAGGGCAATACGGTTTTGTACTAG
ATCTGCTAAGCATTTTGGGGAGAACTCGAACAGATTCCTTTGTACCACAG
CCGAGTTAAAGCCTATACGCATAGCGGTGTCAACAGCATTGTTTCGGAAG
CACGAAGCTCGCATTGAGGTTCTTCTCATCAAGCGAGGAAAAGAGCCAAG
AAAAGACCTGTGGTCATTACCGGGGGGGAAGGTTGAAGAGCACGAAAATC
TACAAGACGCAGCACTTCGAGAACTTCTTGAAGAAACGGCGATTGATTCA
AGCCACTGTCGAATACTACCGCGTCCAGTGGATATAGCACTTGTTCCACG
TGAAAGACCTTTGTTTCGTATTTACGTGTTCGCTGGAATTTGCGACATCG
ACGCAACTCTAAATGCAGGGGATGACGCCGCTGATGTTGGATTCTATCGA
ACGGATGAAATCGTTGCTCTACCATTAGTGGACGGTCTTGAAAGCAGAGT
GCTCAAGGCACTGGCAGCCATCCTGGATGATGCGAAGATTGCTGCCGAGT
TTAACGACTCGCCTTCGCAATAA
back to top

Coding sequence (CDS) from alignment at tig00000860_pilon:536508..537080+

>Ggra8854.t1 ID=Ggra8854.t1|Name=Ggra8854.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=573bp|location=Sequence derived from alignment at tig00000860_pilon:536508..537080+ (Gracilaria gracilis GNS1m male)
ATGACTATCTCGGCTTACGTTCTCTCCAGGGCAATACGGTTTTGTACTAG
ATCTGCTAAGCATTTTGGGGAGAACTCGAACAGATTCCTTTGTACCACAG
CCGAGTTAAAGCCTATACGCATAGCGGTGTCAACAGCATTGTTTCGGAAG
CACGAAGCTCGCATTGAGGTTCTTCTCATCAAGCGAGGAAAAGAGCCAAG
AAAAGACCTGTGGTCATTACCGGGGGGGAAGGTTGAAGAGCACGAAAATC
TACAAGACGCAGCACTTCGAGAACTTCTTGAAGAAACGGCGATTGATTCA
AGCCACTGTCGAATACTACCGCGTCCAGTGGATATAGCACTTGTTCCACG
TGAAAGACCTTTGTTTCGTATTTACGTGTTCGCTGGAATTTGCGACATCG
ACGCAACTCTAAATGCAGGGGATGACGCCGCTGATGTTGGATTCTATCGA
ACGGATGAAATCGTTGCTCTACCATTAGTGGACGGTCTTGAAAGCAGAGT
GCTCAAGGCACTGGCAGCCATCCTGGATGATGCGAAGATTGCTGCCGAGT
TTAACGACTCGCCTTCGCAATAA
back to top