Ggra884.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra884.t1
Unique NameGgra884.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length130
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:130650..131138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra884Ggra884Gracilaria gracilis GNS1m malegenetig00000212_pilon 130650..131138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra884.t1Ggra884.t1Gracilaria gracilis GNS1m malepolypeptidetig00000212_pilon 130650..131138 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra884.t1.start1Ggra884.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000212_pilon 130650..130652 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra884.t1.CDS1Ggra884.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000212_pilon 130650..130827 +
Ggra884.t1.CDS2Ggra884.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000212_pilon 130927..131138 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra884.t1.exon1Ggra884.t1.exon1Gracilaria gracilis GNS1m maleexontig00000212_pilon 130650..130827 +
Ggra884.t1.exon2Ggra884.t1.exon2Gracilaria gracilis GNS1m maleexontig00000212_pilon 130927..131138 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra884.t1.intron1Ggra884.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000212_pilon 130828..130926 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra884.t1.stop1Ggra884.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000212_pilon 131136..131138 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra884.t1 ID=Ggra884.t1|Name=Ggra884.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=130bp
MKRNWKYIKGANALEQAEVVDMLWIWESREILALSLIDLLRFGGSDPKEL
RHNVVIIHRRATTTEAYVSGTVEALVHQYAGNTRSEASNDESSKEIPFED
RFGQAIERLETAKSAIEMALSVLPRRQPP*
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spliced messenger RNA

>Ggra884.t1 ID=Ggra884.t1|Name=Ggra884.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=390bp|location=Sequence derived from alignment at tig00000212_pilon:130650..131138+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACGCAATTGGAAGTATATCAAAGGAGCGAATGCACTAGAGCAAGC
TGAGGTTGTAGATATGTTGTGGATCTGGGAGTCCCGCGAAATCCTTGCCC
TCAGTCTTATTGATTTACTCAGATTTGGTGGAAGCGATCCGAAAGAACTG
CGTCATAACGTTGTGATAATTCACAGGCGTGCCACTACAACTGAGGCGTA
TGTATCTGGGACTGTTGAGGCGCTGGTACACCAGTATGCTGGAAATACTC
GCTCTGAAGCGAGTAATGATGAAAGCTCCAAAGAAATACCTTTTGAAGAT
AGGTTTGGGCAAGCAATTGAGCGCCTGGAGACGGCAAAGAGTGCAATTGA
AATGGCTCTGAGCGTCTTGCCCAGACGCCAGCCTCCCTGA
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protein sequence of Ggra884.t1

>Ggra884.t1 ID=Ggra884.t1|Name=Ggra884.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=130bp
MKRNWKYIKGANALEQAEVVDMLWIWESREILALSLIDLLRFGGSDPKEL
RHNVVIIHRRATTTEAYVSGTVEALVHQYAGNTRSEASNDESSKEIPFED
RFGQAIERLETAKSAIEMALSVLPRRQPP*
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mRNA from alignment at tig00000212_pilon:130650..131138+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra884.t1 ID=Ggra884.t1|Name=Ggra884.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=489bp|location=Sequence derived from alignment at tig00000212_pilon:130650..131138+ (Gracilaria gracilis GNS1m male)
ATGAAACGCAATTGGAAGTATATCAAAGGAGCGAATGCACTAGAGCAAGC
TGAGGTTGTAGATATGTTGTGGATCTGGGAGTCCCGCGAAATCCTTGCCC
TCAGTCTTATTGATTTACTCAGATTTGGTGGAAGCGATCCGAAAGAACTG
CGTCATAACGTTGTGATAATTCACAGGCGTTTGGAGTGGGTACTTCCGTC
TTCTGAACTGGGCTCGACGTTGGTCAACAACCAAACACTGGAAGAGTGAG
AAAGAGCTGCACATTGCTGCTCTGCAGGTGCCACTACAACTGAGGCGTAT
GTATCTGGGACTGTTGAGGCGCTGGTACACCAGTATGCTGGAAATACTCG
CTCTGAAGCGAGTAATGATGAAAGCTCCAAAGAAATACCTTTTGAAGATA
GGTTTGGGCAAGCAATTGAGCGCCTGGAGACGGCAAAGAGTGCAATTGAA
ATGGCTCTGAGCGTCTTGCCCAGACGCCAGCCTCCCTGA
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Coding sequence (CDS) from alignment at tig00000212_pilon:130650..131138+

>Ggra884.t1 ID=Ggra884.t1|Name=Ggra884.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=390bp|location=Sequence derived from alignment at tig00000212_pilon:130650..131138+ (Gracilaria gracilis GNS1m male)
ATGAAACGCAATTGGAAGTATATCAAAGGAGCGAATGCACTAGAGCAAGC
TGAGGTTGTAGATATGTTGTGGATCTGGGAGTCCCGCGAAATCCTTGCCC
TCAGTCTTATTGATTTACTCAGATTTGGTGGAAGCGATCCGAAAGAACTG
CGTCATAACGTTGTGATAATTCACAGGCGTGCCACTACAACTGAGGCGTA
TGTATCTGGGACTGTTGAGGCGCTGGTACACCAGTATGCTGGAAATACTC
GCTCTGAAGCGAGTAATGATGAAAGCTCCAAAGAAATACCTTTTGAAGAT
AGGTTTGGGCAAGCAATTGAGCGCCTGGAGACGGCAAAGAGTGCAATTGA
AATGGCTCTGAGCGTCTTGCCCAGACGCCAGCCTCCCTGA
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