Ggra8836.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8836.t1
Unique NameGgra8836.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length450
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:467259..468608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706536.1
Preferred nameCDS1
PFAMsCTP_transf_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00981,ko:K08818
KEGG ReactionR01799
KEGG Pathwayko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070
KEGG ModuleM00093
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004142,GO:0004605,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005783,GO:0005789,GO:0006139,GO:0006220,GO:0006221,GO:0006575,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006656,GO:0006657,GO:0006658,GO:0006661,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007186,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0007602,GO:0007603,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009165,GO:0009266,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009584,GO:0009605,GO:0009628,GO:0009653,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010511,GO:0010513,GO:0010562,GO:0010866,GO:0010868,GO:0010883,GO:0012505,GO:0016020,GO:0016021,GO:0016024,GO:0016056,GO:0016740,GO:0016772,GO:0016779,GO:0016780,GO:0017169,GO:0018130,GO:0019216,GO:0019220,GO:0019222,GO:0019438,GO:0019637,GO:0019866,GO:0019953,GO:0022412,GO:0022414,GO:0023052,GO:0030133,GO:0030154,GO:0031090,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031410,GO:0031966,GO:0031967,GO:0031975,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0034641,GO:0034654,GO:0040007,GO:0040011,GO:0042175,GO:0042330,GO:0043052,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045017,GO:0045833,GO:0045834,GO:0045937,GO:0046341,GO:0046470,GO:0046471,GO:0046474,GO:0046483,GO:0046486,GO:0046488,GO:0046889,GO:0046890,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048589,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051055,GO:0051174,GO:0051606,GO:0051704,GO:0051716,GO:0055086,GO:0065007,GO:0065008,GO:0070085,GO:0070319,GO:0070382,GO:0070567,GO:0071071,GO:0071073,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0072527,GO:0072528,GO:0080090,GO:0080186,GO:0090207,GO:0090209,GO:0090407,GO:0097164,GO:0097708,GO:0098827,GO:0099503,GO:0104004,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1903725,GO:1903727,GO:1905952
Evalue7.12e-114
EggNOG OGsCOG0575@1|root,KOG1440@2759|Eukaryota
EC2.7.11.22,2.7.7.41
Descriptionphosphatidate cytidylyltransferase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8836Ggra8836Gracilaria gracilis GNS1m malegenetig00000860_pilon 467259..468608 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8836.t1.stop1Ggra8836.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 467259..467261 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8836.t1.CDS1Ggra8836.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 467259..468608 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8836.t1.exon1Ggra8836.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 467259..468608 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8836.t1.start1Ggra8836.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 468606..468608 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8836.t1Ggra8836.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 467259..468608 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8836.t1 ID=Ggra8836.t1|Name=Ggra8836.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=450bp
MVLTRRGAAAAGANEDDVKAALSDTTAITDLPVDSAAEPQQDAAESSAPK
PKKKSDFVARLLSGVLLTGTFVLVVRAGQLLVGVSVILMEIGMFNEILRL
GLPVARENRIPWWRTIGWYFFFALQFFLYGKLVLSHFYARGLDFTLHPAY
QYAMRHHTFLSFCMYCAGFVGFVISLRQNQYHFQFTYFGRALVALLLVVV
QSHFMILNIAHGLIWFILPCWLIIVNDSFGYFCGRMFGKHSLTALSPKKT
WEGYIGAGICTMIAAYFLSGALSAYPSLICPKYDFDDCKILCPPATCDPV
PDVFLLRTAELGLPGLQQTLSISYRPAQLHAIALGLFAALIAPFGGFFAS
GAKRAFNVKDFGSVLPGHGGVTDRVDCQLMMAVFTNVYLINFVRVNFEGS
PDVGKLMAFVADLSTDEQIELLTEIYNRLNRKGISNILANISNATVPSG*
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spliced messenger RNA

>Ggra8836.t1 ID=Ggra8836.t1|Name=Ggra8836.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1350bp|location=Sequence derived from alignment at tig00000860_pilon:467259..468608- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTTGACAAGACGCGGCGCTGCCGCAGCTGGTGCCAATGAAGATGA
TGTTAAAGCTGCTCTTTCTGATACCACTGCAATCACTGATCTGCCCGTAG
ATTCTGCTGCCGAACCTCAGCAAGATGCGGCAGAATCTTCTGCACCAAAG
CCGAAGAAGAAGTCCGATTTTGTGGCGCGTTTGTTGTCCGGCGTTCTTCT
CACGGGAACGTTTGTGCTGGTCGTCCGAGCCGGTCAGTTGTTGGTGGGAG
TCTCCGTCATCTTGATGGAGATTGGCATGTTTAATGAGATCTTACGTCTT
GGTCTTCCTGTTGCCAGGGAGAATCGTATCCCTTGGTGGCGTACTATTGG
TTGGTACTTCTTCTTTGCGTTACAGTTCTTCTTGTACGGAAAGTTGGTCT
TGTCACATTTCTATGCGAGAGGACTGGACTTCACTTTGCATCCTGCTTAT
CAGTATGCCATGCGTCATCATACATTTCTTTCATTCTGTATGTACTGTGC
TGGGTTCGTTGGATTTGTCATTTCATTACGACAGAATCAGTATCACTTCC
AGTTTACGTACTTTGGGCGAGCACTGGTTGCGTTGCTTTTGGTTGTGGTA
CAATCTCATTTCATGATTCTCAATATAGCACACGGTCTTATATGGTTCAT
TCTTCCTTGTTGGCTTATTATTGTCAATGATTCTTTCGGATACTTTTGCG
GTCGCATGTTTGGCAAGCATTCTCTCACTGCATTATCACCGAAGAAGACA
TGGGAAGGATATATTGGCGCTGGTATATGCACCATGATTGCTGCCTACTT
TCTTTCCGGTGCTTTGTCCGCGTACCCTTCTCTCATTTGTCCGAAGTATG
ACTTCGATGACTGCAAAATCCTGTGTCCGCCCGCGACATGCGATCCGGTC
CCAGACGTGTTTCTGCTTCGCACTGCCGAGCTCGGCTTGCCTGGTCTGCA
ACAGACGTTATCTATTTCATACCGTCCCGCCCAATTACATGCTATTGCGC
TAGGTCTTTTCGCCGCTTTAATTGCACCGTTCGGAGGCTTCTTCGCTTCT
GGCGCAAAGCGTGCTTTCAATGTGAAGGATTTTGGAAGCGTTCTCCCAGG
ACACGGAGGAGTGACTGATCGTGTTGACTGTCAACTAATGATGGCGGTGT
TCACAAATGTATATTTGATCAACTTTGTTCGTGTGAACTTTGAAGGGTCT
CCTGATGTTGGCAAGTTGATGGCTTTCGTTGCTGATCTTAGTACTGATGA
GCAGATTGAGCTTCTTACTGAAATCTACAACCGACTTAATAGAAAAGGAA
TTTCGAACATTCTTGCAAACATATCAAACGCAACCGTACCATCTGGGTAA
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protein sequence of Ggra8836.t1

>Ggra8836.t1 ID=Ggra8836.t1|Name=Ggra8836.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=450bp
MVLTRRGAAAAGANEDDVKAALSDTTAITDLPVDSAAEPQQDAAESSAPK
PKKKSDFVARLLSGVLLTGTFVLVVRAGQLLVGVSVILMEIGMFNEILRL
GLPVARENRIPWWRTIGWYFFFALQFFLYGKLVLSHFYARGLDFTLHPAY
QYAMRHHTFLSFCMYCAGFVGFVISLRQNQYHFQFTYFGRALVALLLVVV
QSHFMILNIAHGLIWFILPCWLIIVNDSFGYFCGRMFGKHSLTALSPKKT
WEGYIGAGICTMIAAYFLSGALSAYPSLICPKYDFDDCKILCPPATCDPV
PDVFLLRTAELGLPGLQQTLSISYRPAQLHAIALGLFAALIAPFGGFFAS
GAKRAFNVKDFGSVLPGHGGVTDRVDCQLMMAVFTNVYLINFVRVNFEGS
PDVGKLMAFVADLSTDEQIELLTEIYNRLNRKGISNILANISNATVPSG*
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mRNA from alignment at tig00000860_pilon:467259..468608-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8836.t1 ID=Ggra8836.t1|Name=Ggra8836.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1350bp|location=Sequence derived from alignment at tig00000860_pilon:467259..468608- (Gracilaria gracilis GNS1m male)
ATGGTGTTGACAAGACGCGGCGCTGCCGCAGCTGGTGCCAATGAAGATGA
TGTTAAAGCTGCTCTTTCTGATACCACTGCAATCACTGATCTGCCCGTAG
ATTCTGCTGCCGAACCTCAGCAAGATGCGGCAGAATCTTCTGCACCAAAG
CCGAAGAAGAAGTCCGATTTTGTGGCGCGTTTGTTGTCCGGCGTTCTTCT
CACGGGAACGTTTGTGCTGGTCGTCCGAGCCGGTCAGTTGTTGGTGGGAG
TCTCCGTCATCTTGATGGAGATTGGCATGTTTAATGAGATCTTACGTCTT
GGTCTTCCTGTTGCCAGGGAGAATCGTATCCCTTGGTGGCGTACTATTGG
TTGGTACTTCTTCTTTGCGTTACAGTTCTTCTTGTACGGAAAGTTGGTCT
TGTCACATTTCTATGCGAGAGGACTGGACTTCACTTTGCATCCTGCTTAT
CAGTATGCCATGCGTCATCATACATTTCTTTCATTCTGTATGTACTGTGC
TGGGTTCGTTGGATTTGTCATTTCATTACGACAGAATCAGTATCACTTCC
AGTTTACGTACTTTGGGCGAGCACTGGTTGCGTTGCTTTTGGTTGTGGTA
CAATCTCATTTCATGATTCTCAATATAGCACACGGTCTTATATGGTTCAT
TCTTCCTTGTTGGCTTATTATTGTCAATGATTCTTTCGGATACTTTTGCG
GTCGCATGTTTGGCAAGCATTCTCTCACTGCATTATCACCGAAGAAGACA
TGGGAAGGATATATTGGCGCTGGTATATGCACCATGATTGCTGCCTACTT
TCTTTCCGGTGCTTTGTCCGCGTACCCTTCTCTCATTTGTCCGAAGTATG
ACTTCGATGACTGCAAAATCCTGTGTCCGCCCGCGACATGCGATCCGGTC
CCAGACGTGTTTCTGCTTCGCACTGCCGAGCTCGGCTTGCCTGGTCTGCA
ACAGACGTTATCTATTTCATACCGTCCCGCCCAATTACATGCTATTGCGC
TAGGTCTTTTCGCCGCTTTAATTGCACCGTTCGGAGGCTTCTTCGCTTCT
GGCGCAAAGCGTGCTTTCAATGTGAAGGATTTTGGAAGCGTTCTCCCAGG
ACACGGAGGAGTGACTGATCGTGTTGACTGTCAACTAATGATGGCGGTGT
TCACAAATGTATATTTGATCAACTTTGTTCGTGTGAACTTTGAAGGGTCT
CCTGATGTTGGCAAGTTGATGGCTTTCGTTGCTGATCTTAGTACTGATGA
GCAGATTGAGCTTCTTACTGAAATCTACAACCGACTTAATAGAAAAGGAA
TTTCGAACATTCTTGCAAACATATCAAACGCAACCGTACCATCTGGGTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:467259..468608-

>Ggra8836.t1 ID=Ggra8836.t1|Name=Ggra8836.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1350bp|location=Sequence derived from alignment at tig00000860_pilon:467259..468608- (Gracilaria gracilis GNS1m male)
ATGGTGTTGACAAGACGCGGCGCTGCCGCAGCTGGTGCCAATGAAGATGA
TGTTAAAGCTGCTCTTTCTGATACCACTGCAATCACTGATCTGCCCGTAG
ATTCTGCTGCCGAACCTCAGCAAGATGCGGCAGAATCTTCTGCACCAAAG
CCGAAGAAGAAGTCCGATTTTGTGGCGCGTTTGTTGTCCGGCGTTCTTCT
CACGGGAACGTTTGTGCTGGTCGTCCGAGCCGGTCAGTTGTTGGTGGGAG
TCTCCGTCATCTTGATGGAGATTGGCATGTTTAATGAGATCTTACGTCTT
GGTCTTCCTGTTGCCAGGGAGAATCGTATCCCTTGGTGGCGTACTATTGG
TTGGTACTTCTTCTTTGCGTTACAGTTCTTCTTGTACGGAAAGTTGGTCT
TGTCACATTTCTATGCGAGAGGACTGGACTTCACTTTGCATCCTGCTTAT
CAGTATGCCATGCGTCATCATACATTTCTTTCATTCTGTATGTACTGTGC
TGGGTTCGTTGGATTTGTCATTTCATTACGACAGAATCAGTATCACTTCC
AGTTTACGTACTTTGGGCGAGCACTGGTTGCGTTGCTTTTGGTTGTGGTA
CAATCTCATTTCATGATTCTCAATATAGCACACGGTCTTATATGGTTCAT
TCTTCCTTGTTGGCTTATTATTGTCAATGATTCTTTCGGATACTTTTGCG
GTCGCATGTTTGGCAAGCATTCTCTCACTGCATTATCACCGAAGAAGACA
TGGGAAGGATATATTGGCGCTGGTATATGCACCATGATTGCTGCCTACTT
TCTTTCCGGTGCTTTGTCCGCGTACCCTTCTCTCATTTGTCCGAAGTATG
ACTTCGATGACTGCAAAATCCTGTGTCCGCCCGCGACATGCGATCCGGTC
CCAGACGTGTTTCTGCTTCGCACTGCCGAGCTCGGCTTGCCTGGTCTGCA
ACAGACGTTATCTATTTCATACCGTCCCGCCCAATTACATGCTATTGCGC
TAGGTCTTTTCGCCGCTTTAATTGCACCGTTCGGAGGCTTCTTCGCTTCT
GGCGCAAAGCGTGCTTTCAATGTGAAGGATTTTGGAAGCGTTCTCCCAGG
ACACGGAGGAGTGACTGATCGTGTTGACTGTCAACTAATGATGGCGGTGT
TCACAAATGTATATTTGATCAACTTTGTTCGTGTGAACTTTGAAGGGTCT
CCTGATGTTGGCAAGTTGATGGCTTTCGTTGCTGATCTTAGTACTGATGA
GCAGATTGAGCTTCTTACTGAAATCTACAACCGACTTAATAGAAAAGGAA
TTTCGAACATTCTTGCAAACATATCAAACGCAACCGTACCATCTGGGTAA
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